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Reviews and symposia articles/Articles de revue

The 168-year taxonomy of Claviceps in the light of variations: From three morphological species to four sections based on multigene phylogenies

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Pages 783-792 | Accepted 27 May 2022, Published online: 27 Jun 2022

References

  • Albert TJ, Molla MN, Muzny DM, Nazareth L, Wheeler D, Song X, Richmond TA, Middle CM, Rodesch MJ, Packard CJ, et al. 2007. Direct selection of human genomic loci by microarray hybridization. Nat Methods. 4(11):903–905. doi:10.1038/nmeth1111
  • Alderman SC, Halse RR, White JF. 2004. A reevaluation of the host range and geographical distribution of Claviceps species in the United States. Plant Dis. 88(1):63–81. doi:10.1094/PDIS.2004.88.1.63.
  • Andermann T, Torres Jiménez MF, Matos-Maraví P, Batista R, Blanco-Pastor JL, Gustafsson ALS, Kistler L, Liberal IM, Oxelman B, Bacon CD, et al. 2020. A guide to carrying out a phylogenomic target sequence capture project [Review]. Front Genet. 10(1407). doi:10.3389/fgene.2019.01407.
  • Arcella D, Gómez Ruiz JÁ, Innocenti ML, Roldán R, European Food Safety Authority. 2017. Human and animal dietary exposure to ergot alkaloids. EFSA J. 15(7):4902.
  • Barger G. 1931. Chapter I. Ergot: historical. In: Barger G, editor. Ergot and Ergotism — a Monograph. London: Gurney and Jackson; p. 1–13.
  • Baum DA, Shaw KL. 1995. Genealogical perspectives on the species problem. In: Hoch PC, Stephenson AG, editors. Experimental and molecular approaches to plant biosystematics. St. Louis: Missouri Botanical Garden; p. 289–303.
  • Buchta M, Cvak L. 1999. Ergot alkaloids and other metabolites of the genus Claviceps. In: Kren V, Cvak L, editors. Ergot: the genus Claviceps. Amsterdam (The Netherlands etc): Harwood Academic Publishers; p. 25–56. (republished 2006 by Taylor and Francis e-Library).
  • Campbell WP. 1957. Studies on ergot infection in gramineous hosts. Can J Bot. 35(3):315–320. doi:10.1139/b57-028.
  • de Candolle AP. 1815. Famille des champignons. In: Candolle AP, editor. Flore française. Paris: Desray; p. 115.
  • Dettman JR, Eggertson Q. 2021. Phylogenomic analyses of Alternaria section Alternaria: a high-resolution, genome-wide study of lineage sorting and gene tree discordance. Mycologia. 113(6):1218–1232. doi:10.1080/00275514.2021.1950456.
  • Dobzhansky T. 1970. Genetics of the Evolutionary Process. New York: Columbia University Press.
  • Donoghue MJ. 1985. A critique of the biological species concept and recommendations for a phylogenetic alternative. Bryologist. 88(3):172–181. doi:10.2307/3243026.
  • Douhan GW, Smith ME, Huyrn KL, Westbrook A, Beerli P, Fisher AJ. 2008. Multigene analysis suggests ecological speciation in the fungal pathogen Claviceps purpurea. Mol Ecol. 17(9):2276–2286. doi:10.1111/j.1365-294X.2008.03753.x.
  • Flieger M, Wurst M, Shelby R. 1997. Ergot alkaloids–sources, structures and analytical methods. Folia Microbiol (Praha). 42(1):3–29. doi:10.1007/BF02898641.
  • Flieger M, Stodůlková E, Wyka SA, Černý J, Grobárová V, Píchová K, Novák P, Man P, Kuzma M, Cvak L, et al. 2019. Ergochromes: heretofore neglected side of ergot toxicity. Toxins. 11(8):439. doi:10.3390/toxins11080439
  • Frederickson DE, Mantle PG, Wajd M. 1991. Claviceps africana sp. nov.; the distinctive ergot pathogen of sorghum in Africa. Mycol Res. 95(9):1101–1107. doi:10.1016/S0953-7562(09)80555-8.
  • Fries EM. 1822. Systema mycologicum: sistens fungorum ordines, genera et species, huc usque cognitas, quas ad normam methodi naturalis determinavit. Lundae: Ex Officina Berlingiana; p. 268–269.
  • Fries EM. 1823. Systema mycologicum: sistens fungorum ordines, genera et species, huc usque cognitas, quas ad normam methodi naturalis determinavit. Lundae: Ex Officina Berlingiana; p. 325.
  • Geiser DM, Klich MA, Frisvad JC, Peterson SW, Varga J, Samson RA. 2007. The current status of species recognition and identification in Aspergillus. Stud Mycol. 59:1–10. doi:10.3114/sim.2007.59.01.
  • Gnirke A, Melnikov A, Maguire J, Rogov P, LeProust EM, Brockman W, Fennell T, Giannoukos G, Fisher S, Russ C, et al. 2009. Solution hybrid selection with ultra-long oligonucleotides for massively parallel targeted sequencing. Nat Biotechnol. 27(2):182–189. doi:10.1038/nbt.1523
  • Grewe F, Ametrano C, Widhelm TJ, Leavitt S, Distefano I, Polyiam W, Pizarro D, Wedin M, Crespo A, Divakar PK, et al. 2020. Using target enrichment sequencing to study the higher-level phylogeny of the largest lichen-forming fungi family: parmeliaceae (Ascomycota). IMA Fungus. 11(1):27. doi:10.1186/s43008-020-00051-x
  • Herd GW, Loveless AR. 1965. Studies of Rhodesian ergots III. Claviceps rhynchelytri sp. nov. and Claviceps digitariae Hansford. Kirkia. 5(1):21–24.
  • Hörandl E, Stuessy TF. 2010. Paraphyletic groups as natural units of biological classification. Taxon. 59(6):1641–1653. doi:10.1002/tax.596001.
  • Jones MR, Good JM. 2016. Targeted capture in evolutionary and ecological genomics. Mol Ecol. 25(1):185–202. doi:10.1111/mec.13304.
  • Kren V, Cvak L. 1999. Ergot: the Genus Claviceps. The Netherlands: Harwood academic publishers. (republished 2006 by Taylor and Francis e-Library).
  • Langdon RFN. 1952. Studies on ergot (Thesis). University of Queensland.
  • Lev-Yadun S, Halpern M. 2007. Ergot (Claviceps purpurea)-An aposematic fungus. Symbiosis. 43(2):105–108.
  • Léveillé MJ-H. 1827. Sur l’ergot, ou nouvelles recherches sur la cause et les effects de l’ergot considéré sous le triple rapport botanique, agricole et médical. Mem Soc Linn Paris. 5:578.
  • Liu M, Overy DP, Cayouette J, Shoukouhi P, Hicks C, Bisson K, Sproule A, Wyka SA, Broders K, Popovic Z, et al. 2020. Four phylogenetic species of ergot from Canada and their characteristics in morphology, alkaloid production, and pathogenicity. Mycologia. 112(5):974–988. doi:10.1080/00275514.2020.1797372
  • Liu M, Shoukouhi P, Bisson KR, Wyka SA, Broders KD, Menzies JG. 2021. Sympatric divergence of the ergot fungus, Claviceps purpurea, populations infecting agricultural and nonagricultural grasses in North America. Ecol Evol. 11(1):273–293. doi:10.1002/ece3.7028.
  • Liu M, Tanaka E, Kolařík M. 2022. Neotypification of Claviceps humidiphila and recognition of C. bavariensis sp. nov. Mycotaxon. 137(1):73–87. doi:10.5248/137.73.
  • Loveless AR. 1964. Use of the honeydew state in the identification of ergot species. Trans Brit Mycol Soc. 47(2):205–213. doi:10.1016/S0007-1536(64)80054-1.
  • Loveless AR. 1967. Claviceps fusiformis sp.nov., the causal agent of an agalactia of sows. Trans Brit Mycol Soc. 50(1):15–18. doi:10.1016/S0007-1536(67)80058-5.
  • Lücking R, Aime MC, Robbertse B, Miller AN, Ariyawansa HA, Aoki T, Cardinali G, Crous PW, Druzhinina IS, Geiser DM, et al. 2020. Unambiguous identification of fungi: where do we stand and how accurate and precise is fungal DNA barcoding? IMA Fungus. 11(1):14.
  • Luckow M. 1995. Species concepts: assumptions, methods, and applications. Syst Bot. 20(4):589–605. doi:10.2307/2419812.
  • Luttrell ES. 1980. Host–parasite relationships and development of the ergot sclerotium in Claviceps purpurea. Can J Bot. 58(8):942–958. doi:10.1139/b80-118.
  • Mantle PG. 1968. Studies on Sphacelia sorghi McRae, an ergot of Sorghum vulgare. Pers. 62(3):443–449.
  • Matute DR, Sepúlveda VE. 2019. Fungal species boundaries in the genomics era. Fungal Genet Biol. 131:103249. doi:10.1016/j.fgb.2019.103249.
  • Mayr E. 1942. Systematics and the origin of species from the viewpoint of a zoologist. New York: Columbia University Press.
  • Mayr E. 1996. What is a species and what is not? Philos Sci. 63:262–277. doi:10.1086/289912.
  • Meier R, Willmann R. 2000. The Hennigian species concept. In: Wheeler QD, Meier R, editors. Species concepts and phylogenetic theory. New York: Columbia University Press; p. 30–43.
  • Menzies JG, Turkington TK. 2015. An overview of the ergot (Claviceps purpurea) issue in western Canada: challenges and solutions. Can J Plant Pathol. 37(1):40–51. doi:10.1080/07060661.2014.986527.
  • Miedaner T, Geiger HH. 2015. Biology, genetics, and management of ergot (Claviceps spp.) in rye, sorghum, and pearl millet. Toxins. 7(3):659–678. doi:10.3390/toxins7030659.
  • Mower RL, Hancock JG. 1975. Sugar composition of ergot honeydews. Can J Bot. 53(23):2813–2825. doi:10.1139/b75-309.
  • Negård M, Uhlig S, Kauserud H, Andersen T, Høiland K, Vrålstad T. 2015. Links between genetic groups, indole alkaloid profiles and ecology within the grass-parasitic Claviceps purpurea species complex. Toxins. 7(5):1431–1456. doi:10.3390/toxins7051431.
  • Nguyen HDT, McCormick W, Eyres J, Eggertson Q, Hambleton S, Dettman JR. 2021. Development and evaluation of a target enrichment bait set for phylogenetic analysis of oomycetes. Mycologia. 113(4):856–867. doi:10.1080/00275514.2021.1889276.
  • Nixon KC, Wheeler QD. 1990. An amplification of the phylogenetic species concept. Cladistics. 6:211–223. doi:10.1111/j.1096-0031.1990.tb00541.x.
  • O’Donnell K, Cigelnik E. 1997. Two divergent intragenomic rDNA ITS2 types within a monophyletic lineage of the fungus Fusarium are nonorthologous. Mol Phylogenet Evol. 7(1):103–116. doi:10.1006/mpev.1996.0376.
  • Oberstockstall T. 2013. Ergot. The fungi that ate medieval Europe. RAMS digital.
  • Pažoutová S, Fucikovsky L, Leyva-Mir SG, Flieger M. 1998. Claviceps citrina sp. nov., a parasite of the halophytic grass Distichlis spicata from Mexico. Mycol Res. 102:850–854. doi:10.1017/S095375629700573X.
  • Pažoutová S, Parbery DP. 1999. The taxonomy and phylogeny of Claviceps. In: Kren V, Cvak L, editors. Ergot: the Genus Claviceps. Amsterdam (The Netherlands): Harwood Academic Publishers; p. 25–56. (republished 2006 by Taylor and Francis e-Library).
  • Pažoutová S, Kolařík M, Kolínská R. 2004. Pleomorphic conidiation in Claviceps. Mycol Res. 108(2):126–135. doi:10.1017/S0953756203009067.
  • Pažoutová S, Kolařík M, Odvody G, Frederickson D, Olšovská J, Man P. 2008a. A new species complex including Claviceps fusiformis and Claviceps hirtella. Fungal Divers. 2008:95–111.
  • Pažoutová S, Olšovská J, Šulc M, Chudíčková M, Flieger M. 2008b. Claviceps nigricans and Claviceps grohii: their alkaloids and phylogenetic placement. J Nat Prod. 71(6):1085–1088. doi:10.1021/np8001173.
  • Pažoutová S, Odvody GN, Frederickson DE, Chudíčková M, Olšovská J, Kolařík M. 2011. New Claviceps species from warm-season grasses. Fungal Divers. 49(1):145–165. doi:10.1007/s13225-011-0102-4.
  • Pažoutová S, Pešicová K, Chudíčková M, Šrůtka P, Kolařík M. 2015. Delimitation of cryptic species inside Claviceps purpurea. Fungal Biol. 119(1):7–26. doi:10.1016/j.funbio.2014.10.003.
  • Píchová K, Pažoutová S, Kostovčík M, Chudíčková M, Stodůlková E, Novák P, Flieger M, Van der linde E, Kolařík M. 2018. Evolutionary history of ergot with a new infrageneric classification (Hypocreales: clavicipitaceae: claviceps). Mol Phylogenet Evol. 123:73–87. doi:10.1016/j.ympev.2018.02.013.
  • Porter JK, Bacon CW, Robbins JD. 1974. Major alkaloids of a Claviceps isolated from toxic Bermuda grass. J Agric Food Chem. 22(5):838–841. doi:10.1021/jf60195a007.
  • Rykard DM, Luttrell ES, Bacon CW. 1984. Conidiogenesis and Conidiomata in the Clavicipitoideae. Mycologia. 76(6):1095–1103.
  • Schoch CL, Seifert KA, Huhndorf S, Robert V, Spouge JL, Levesque CA, Chen W, Barcoding Consortium F. 2012. Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for Fungi. Proc Natl Acad Sci USA. 109(16):6241. doi:10.1073/pnas.1117018109.
  • Schumacher HCF. 1803. Enumeratio plantarum in partibus Saellandiae septentrionalis et orientalis. Hafnia: Apud Fridericum Brummer. Typis Zach. Breum.
  • Shoukouhi P, Hicks C, Menzies JG, Popovic Z, Chen W, Seifert KA, Assabgui R, Liu M. 2019. Phylogeny of Canadian ergot fungi and a detection assay by real-time polymerase chain reaction. Mycologia. 111(3):493–505. doi:10.1080/00275514.2019.1581018.
  • Stoll A. 1950. Recent investigations on ergot alkaloids. Chem Rev. 47(2):197–218. doi:10.1021/cr60147a002.
  • Tanaka K, Sugawa T. 1952. Studies on ergot alkaloids by paper partition chromatography. I YAKUGAKU ZASSHI = J Pharma Soc Jpn. 72(5):616–620.
  • Tanda S, Kawatani T. 1976. A new species of Claviceps parasitic on Imperata cylindrica Beauv. var. koenigii Durand et Schinz. Trans Mycol Soc Japan. 17:289–294.
  • Tanda S. 1977. Mycological studies on ergot in Japan (Part 3): a new variety of Claviceps purpurea Tul. parasitic on Alopecurus aequalis Sobol. var. amurensis Ohwi. J Agric Sci, Tokyo Nogyo Daigaku. 22:293–299.
  • Tanda S. 1978a. Mycological studies on ergot in Japan (Part 4): two varieties of Claviceps purpurea Tul. parasitic on timothy. Phleum pretense L. J Agric Sci, Tokyo Nogyo Daigaku. 23:141–150.
  • Tanda S. 1978b. Mycological studies on ergot in Japan (Part 6): a physiologic race of Claviceps purpurea Tul. var. alopecuri Tanda collected from Trisetum bifidum Ohwi. J Agric Sci, Tokyo Nogyo Daigaku. 23:207–214.
  • Tanda S. 1978c. Mycological studies on ergot in Japan (Part 7): two varieties of Claviceps purpurea Tul. parasitic on Agrostis spp. J Agric Sci, Tokyo Nogyo Daigaku. 23:215–221.
  • Tanda S. 1979a. Mycological studies on ergot in Japan (Part 8): ergots on Calamagrostis spp. J Agric Sci, Tokyo Nogyo Daigaku. 23:67–78.
  • Tanda S. 1979b. Mycological studies on ergot in Japan (Part 9): distinct variety of Claviceps purpurea Tul. on Phalaris arundinacea L. and P. arundinacea var. picta L. J Agric Sci, Tokyo Nogyo Daigaku. 24:84.
  • Tanda S. 1979c. Mycological studies on ergot in Japan (Part 10): ergots on Velvet grass, Holcus lanatus L. J Agric Sci, Tokyo Nogyo Daigaku. 24:145–148.
  • Tanda S. 1980a. Mycological studies on ergot in Japan (Part 11): ergots on Polypogon fugax. Trans Mycol Soc Japan. 21:97–101.
  • Tanda S. 1980b. Mycological studies on ergot in Japan (Part 16): ergots on orchard grass, Dactylis glomerata L. J Agric Sci, Tokyo Nogyo Daigaku. 25:263–271.
  • Tanda S. 1981. Mycological studies on ergot in Japan (Part 19): ergots on bluegrass (Poa spp.). J Agric Sci, Tokyo Nogyo Daigaku. 26(1):179–192.
  • Tanda S. 1985. Mycological studies on the ergot in Japan (XXI): a new species of Claviceps parasitic on Arundinella hirta (Thunb.) C. Tanaka. J Agric Sci, Tokyo Nogyo Daigaku. 30(2):94–99.
  • Tanda S, Harada Y. 1989. Mycological studies on the ergot in Japan (XXII) A new ergot parasitic on Isachne globosa. Trans Mycol Soc Japan. 30:105–109.
  • Tanda S. 1991. Mycological studies on the ergot in Japan, 26: a new ergot, Claviceps bothriochloae parasitic on Bothriochloa parviflora. J Agric Sci, Tokyo Nogyo Daigaku. 36(1):36–42.
  • Tanda S. 1992. Mycological studies on the ergot in Japan, 27: an undescribed species Clavieps on Digitaria. J Agric Sci, Tokyo Nogyo Daigaku. 36(3):182–187.
  • Taylor JW, Jacobson DJ, Kroken S, Kasuga T, Geiser DM, Hibbett DS, Fisher MC. 2000. Phylogenetic species recognition and species concepts in fungi. Fungal Genet Biol. 31:21–32. doi:10.1006/fgbi.2000.1228.
  • Tulasne LR. 1853. Mémoire sur l’ergot des Glumacées. Ann Sci Nat Bot. 20:5–56.
  • Uhlig S, Egge-Jacobsen W, Vrålstad T, Miles CO. 2014. Indole-diterpenoid profiles of Claviceps paspali and Claviceps purpurea from high-resolution Fourier transform orbitrap mass spectrometry. Rapid Commun Mass Spectrom. 28(14):1621–1634. doi:10.1002/rcm.6938.
  • Uhlig S, Rangel-Huerta OD, Divon HH, Rolén E, Pauchon K, Sumarah MW, Vrålstad T, Renaud JB. 2021. Unraveling the ergot alkaloid and indole diterpenoid metabolome in the Claviceps purpurea species complex using lc–hrms/ms diagnostic fragmentation filtering. J Agric Food Chem. 69(25):7137–7148. doi:10.1021/acs.jafc.1c01973.
  • Wäli PP, Wäli PR, Saikkonen K, Tuomi J. 2013. Is the pathogenic ergot fungus a conditional defensive mutualist for its host grass? PLOS ONE. 8(7):e69249. doi:10.1371/journal.pone.0069249.
  • Wyka SA, Mondo SJ, Liu M, Dettman J, Nalam V, Broders KD. 2021. Whole-genome comparisons of ergot fungi reveals the divergence and evolution of species within the genus claviceps are the result of varying mechanisms driving genome evolution and host range expansion. Genome Biol Evol. 13(2):evaa267. doi:10.1093/gbe/evaa267.
  • Xu J. 2020. Fungal species concepts in the genomics era. Genome. 63(9):459–468. doi:10.1139/gen-2020-0022.

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