Rhizospheric bacteria for use in preventing Fusarium wilt and crown root rot of tomato under natural field conditions

References

• Ali RS, Poll C, Kandeler E. 2018. Dynamics of soil respiration and microbial communities: interactive controls of temperature and substrate quality. Soil Biol Biochem. 127:60–70. doi:10.1016/j.soilbio.2018.09.010
   Web of Science ®Google Scholar
• Amaresan N, Jayakumar V, Kumar K, Thajuddin N. 2019. Biocontrol and plant growth-promoting ability of plant-associated bacteria from tomato (Lycopersicum esculentum) under field condition. Microb Pathog. 136:103713. doi:10.1016/j.micpath.2019.103713
   PubMed Web of Science ®Google Scholar
• Apodaca-Sánchez MA, Zavaleta-Mejía E, Osada KS, García-Espinoza R. 2002. Frecuencia de campos infestados con Fusarium oxysporum f. sp. radicis-lycopersici en Sinaloa, México, y su control. Rev Mex Fitopatol. 20:1–7.
   Google Scholar
• Atherton JG, Rudich J. 2013. The tomato crop: a scientific basis for improvement. Roberts EH, Series editor. London, UK: Springer-Dordrecht. Series editor. doi:10.1007/978-94-009-3137-4.
   Google Scholar
• Barratt BIP, Moran VC, Bigler F, van Lenteren JC. 2018. The status of biological control and recommendations for improving uptake for the future. BioControl. 63:155–167. doi:10.1007/s10526-017-9831-y
   Web of Science ®Google Scholar
• Baysal Ö, Çalışkan M, Yeşilova Ö. 2008. An inhibitory effect of a new Bacillus subtilis strain (EU07) against Fusarium oxysporum f. sp. radicis-lycopersici. Physiol Mol Plant Pathol. 73:25–32. doi:10.1016/j.pmpp.2008.11.002
   Web of Science ®Google Scholar
• Bouyoucos GJ. 1962. Hydrometer method improved for making particle size analysis of soils. Agron J. 54:464–465. doi:10.2134/agronj1962.00021962005400050028x
   Web of Science ®Google Scholar
• Chow YY, Rahman S, Ting ASY. 2018. Interaction dynamics between endophytic biocontrol agents and pathogen in the host plant studied via quantitative real-time polymerase chain reaction (qPCR) approach. Biol Control. 125:44–49. doi:10.1016/j.biocontrol.2018.06.010
   Web of Science ®Google Scholar
• Çolak A, Biçici M. 2013. PCR detection of Fusarium oxysporum f.sp. radicis-lycopersici and races of F. oxysporum f.sp. lycopersici of tomato in protected tomato growing areas of Eastern Mediterranean Region of Turkey. Turk J Agric For. 37:457–467. doi:10.3906/tar-1203-71
   Web of Science ®Google Scholar
• Connor N, Sikorski J, Rooney AP, Kopac S, Koeppel AF, Burger A, Cole SG, Perry EB, Krizanc D, Field NC, et al. 2010. Ecology of speciation in the genus Bacillus. Appl Environ Microbiol. 76:1349–1358. doi:10.1128/AEM.01988-09
   PubMed Web of Science ®Google Scholar
• De Corato U. 2020. Soil microbiota manipulation and its role in suppressing soil-borne plant pathogens in organic farming systems under the light of microbiome-assisted strategies. Chem Biol Technol Agric. 7:17. doi:10.1186/s40538-020-00183-7
   Web of Science ®Google Scholar
• Domenech J, Reddy MS, Kloepper JW, Ramos B, Gutierrez-Mañero J. 2006. Combined application of the biological product LS213 with Bacillus, Pseudomonas or Chryseobacterium for growth promotion and biological control of soil-borne diseases in pepper and tomato. Biocontrol. 51:245–258. doi:10.1007/s10526-005-2940-z
   Web of Science ®Google Scholar
• Driscoll WC. 1996. Robustness of the ANOVA and Tukey-Kramer statistical tests. Comput Ind Eng. 31:265–268. doi:10.1016/0360-8352(96)00127-1
   Web of Science ®Google Scholar
• Durán P, Viscardi S, Acuña JJ, Cornejo P, Azcón R, de la Luz Mora M. 2018. Endophytic selenobacteria and arbuscular mycorrhizal fungus for selenium biofortification and Gaeumannomyces graminis biocontrol. J Soil Sci Plant Nutr. 18(4):1021–1035. doi:10.4067/S0718-95162018005002902.
   Web of Science ®Google Scholar
• Elanchezhiyan K, Keerthana U, Nagendran K, Prabhukarthikeyan SR, Prabakar K, Raguchander T, Karthikeyan G. 2018. Multifaceted benefits of Bacillus amyloliquefaciens strain FBZ24 in the management of wilt disease in tomato caused by Fusarium oxysporum f. sp. lycopersici. Physiol Mol Plant Pathol. 103:92–101. doi:10.1016/j.pmpp.2018.05.008
   Web of Science ®Google Scholar
• FAOSTAT - Food and Agriculture Organization Corporate Statistical Database, United Nations. 2019. http://www.fao.org/faostat/en/#home Accessed 2021 Mar 10.
   Google Scholar
• Farokh RZ, Sachdev D, Kazemi-Pour N, Engineer A, Pardesi KR, Zinjarde S, Dhakephalkar PK, Chopade BA. 2011. Characterization of plant-growth-promoting traits of Acinetobacter species isolated from rhizosphere of Pennisetum glaucum. J Microbiol Biotechnol. 21(6):556–566. doi:10.4014/jmb.1012.12006.
   PubMed Web of Science ®Google Scholar
• Figueroa-López AM, Cordero-Ramírez JD, Martínez-Álvarez JC, López-Meyer M, Lizárraga-Sánchez GJ, Félix-Gastélum R, Maldonado-Mendoza IE. 2016. Rhizospheric bacteria of maize with potential for biocontrol of Fusarium verticillioides. SpringerPlus. 5:1–12. doi:10.1186/s40064-016-1780-x
   PubMedGoogle Scholar
• Gee GW, Or D. 2002. Particle Size Analysis. In: Dane JH, Topp GC, editors. Methods of soil analysis, Part 4, Physical methods, Soils science society of America, Book Series No. 5, Madison, WI, USA. p. 255–293.
   Google Scholar
• Gómez P, Paterson S, De Meester L, Liu X, Lenzi L, Sharma MD, McElroy K, Buckling A. 2016. Local adaptation of a bacterium is as important as its presence in structuring a natural microbial community. Nat Commun. 7:12453. doi:10.1038/ncomms12453
   PubMed Web of Science ®Google Scholar
• Guo JH, Qi HY, Guo YH, Ge HL, Gong LY, Zhang LX, Sun PH. 2004. Biocontrol of tomato wilt by plant growth-promoting rhizobacteria. Biol Control. 29:66–72. doi:10.1016/S1049-9644(03)00124-5
   Web of Science ®Google Scholar
• Hernández-Martínez R, López-Benítez A, Borrego-Escalante F, Espinoza-Velázquez J, Sánchez-Aspeytia D, Maldonado-Mendoza IE, López-Ochoa LA. 2014. Races of Fusarium oxysporium f.sp. lycopersici in tomato farmlands in San Luis Potosí. Rev Mex Cienc Agríc. 5(7):1169–1178.
   Google Scholar
• Hu R, Huang X, Huang J, Li Y, Zhang C, Yin Y, Chen Z, Jin Y, Cai J, Cui F. 2015. Long- and short-term health effects of pesticide exposure: a cohort study from China. PLOS ONE. 10:e0128766. doi:10.1371/journal.pone.0128766
   PubMed Web of Science ®Google Scholar
• Iyer B, Rajput MS, Rajkumar S. 2017. Effect of succinate on phosphate solubilization in nitrogen fixing bacteria harbouring chickpea and their effect on plant growth. Microbiol Res. 202:43–50. doi:10.1016/j.micres.2017.05.005
   PubMedGoogle Scholar
• Jangir M, Sharma S, Sharma S. 2019. Target and non-target effects of dual inoculation of biocontrol agents against Fusarium wilt in Solanum lycopersicum. Biol Control. 138:104069. doi:10.1016/j.biocontrol.2019.104069
   Web of Science ®Google Scholar
• Kamali M, Ahmadi J, Naeimi S, Guo D. 2019. Characterization of Bacillus isolates from the rhizosphere of tomato suppressing Fusarium wilt disease. Acta Phytopathol Entomol Hung. 54(1):53–68. doi:10.1556/038.54.2019.006.
   Google Scholar
• Kamou NN, Karasali H, Menexes G, Kasiotis KM, Bon MC, Papadakis EN, Tzelepis GD, Lotos L, Lagopodi AL. 2015. Isolation screening and characterisation of local beneficial rhizobacteria based upon their ability to suppress the growth of Fusarium oxysporum f. sp. radicis-lycopersici and tomato foot and root rot. Biocontrol Sci Technol. 25(8):928–949. doi:10.1080/09583157.2015.1020762.
   Web of Science ®Google Scholar
• Kariuki CK, Mutitu EW, Muiru WM. 2020. Effect of Bacillus and Trichoderma species in the management of the bacterial wilt of tomato (Lycopersicum esculentum) in the field. Egypt J Biol Pest Control. 30:109. doi:10.1186/s41938-020-00310-4
   Web of Science ®Google Scholar
• Khalil MMR, Fierro-Coronado RA, Peñuelas-Rubio O, Villa-Lerma AG, Plascencia-Jatomea R, Félix-Gastélum R, Maldonado-Mendoza IE. 2021. Novel native tomato rhizospheric bacteria as potential biocontrol agents of Fusarium oxysporum ff. spp. lycopersici race 3 and radicis-lycopersici. Saudi J Biol Sci. 28:7460–7471. doi:10.1016/j.sjbs.2021.08.043
   PubMed Web of Science ®Google Scholar
• Larkin RP, Fravel DR. 1998. Efficacy of various fungal and bacterial biocontrol organisms for control of Fusarium wilt of tomato. Plant Dis. 82(9):1022–1028. doi:10.1094/pdis.1998.82.9.1022.
   PubMed Web of Science ®Google Scholar
• Lizárraga-Sánchez GJ, Leyva-Madrigal KY, Sánchez-Peña P, Quiroz-Figueroa FR, Maldonado-Mendoza IE. 2015. Bacillus cereus sensu lato strain B25 controls maize stalk and ear rot in Sinaloa, Mexico. Field Crops Res. 176:11–21. doi:10.1016/j.fcr.2015.02.015
   Web of Science ®Google Scholar
• Manzo D, Ferriello F, Puopolo G, Zoina A, Esposito D, Tardella L, Ferrarini A, Ercolano MR. 2016. Fusarium oxysporum f.sp. radicis-lycopersici induces distinct transcriptome reprogramming in resistant and susceptible isogenic tomato lines. BMC Plant Biol. 16:53. doi:10.1186/s12870-016-0740-5
   PubMed Web of Science ®Google Scholar
• Mendívil-Trujillo HR, 2013. Identificación molecular de razas fisiológicas de Fusarium oxysporum f. sp. lycopersici en el estado de Sinaloa, México. M. Sc. Thesis dissertation. México: Universidad autónoma de Sinaloa.
   Google Scholar
• Mertler CA, Reinhart RV. 2016. Advanced and multivariate statistical methods: practical application and interpretation. New York: Routledge. doi:10.4324/9781315266978.
   Google Scholar
• Moradi H, Bahramnejad B, Amini J, Siosemardeh A, Haji-Allahverdipoor K. 2012. Suppression of chickpea (Cicer arietinum L.) Fusarium wilt by Bacillus subtilis and Trichoderma harzianum. Plant Omics J. 5(2):68–74. https://www.pomics.com/bahramnejad_5_2_2012_68_74.pdf
   Web of Science ®Google Scholar
• Nguyen DT, Hieu NC, Hung NV, Thao HTB, Keswani C, Van Toan P, Hoat TX. 2019. Biological control of Fusarium root rot of Indian mulberry (Morinda officinalis How.) with consortia of agriculturally important microorganisms in Viet Nam. Chem Biol Technol Agric. 6:1–11. doi:10.1186/s40538-019-0168-x
   Web of Science ®Google Scholar
• Olsen S, Cole C, Watanabe F, Dean L 1954. Estimation of available phosphorus in soils by extraction with sodium bicarbonate. USDA Circular Nr 939, Washington (D.C): US Gov. Print. Office.
   Google Scholar
• Pandin C, Darsonval M, Mayeur C, Le Coq D, Aymerich S, Briandeta R. 2019. Biofilm formation and synthesis of antimicrobial compounds by the biocontrol agent Bacillus velezensis QST713 in an Agaricus bisporus compost micromodel. Appl Environ Microbiol. 85(12):e00327–19. doi:10.1128/AEM.00327-19.
   PubMed Web of Science ®Google Scholar
• Pearson K. 1901. Notes on regression and inheritance in the case of two parents. Proc R Soc Lond. 58:240–242.
   Google Scholar
• Pignatelli M, Moya A, Tamames J. 2009. EnvDB, a database for describing the environmental distribution of prokaryotic taxa. Environ Microbiol Rep. 1(3):191–197. doi:10.1111/j.1758-2229.2009.00030.x.
   PubMed Web of Science ®Google Scholar
• Prabhukarthikeyan R, Saravanakumar D, Raguchander T. 2014. Combination of endophytic Bacillus and Beauveria for the management of Fusarium wilt and fruit borer in tomato. Pest Manag Sci. 70:1742–1750. doi:10.1002/ps.3719
   PubMed Web of Science ®Google Scholar
• PROYECTO de Norma Oficial Mexicana PROY NOM-021-RECNAT-2000. Que establece las especificaciones de fertilidad, salinidad y clasificación de suelos. Estudios, muestreo y análisis. https://biblioteca.semarnat.gob.mx/janium/Documentos/Ciga/libros2009/DO2280n.pdf.
   Google Scholar
• Rohlf FJ, Fisher DR. 1968. Tests for hierarchical structure in random data sets. Syst Biol. 17(4):407–412. doi:10.1093/sysbio/17.4.407.
   Google Scholar
• Rowe RC. 1980. Comparative pathogenicity and host ranges of Fusarium oxysporum isolates causing crown and root rot of greenhouse and field-grown tomatoes in North America and Japan. Phytopathology. 70(12):1143–1148. doi:10.1094/Phyto-70-1143.
   Web of Science ®Google Scholar
• San Millan AF, Larraya L, Farran I, Ancin M, Veramendi J. 2021. Successful biocontrol of major postharvest and soil-borne plant pathogenic fungi by antagonistic yeasts. Biol Control. 160:104683. doi:10.1016/j.biocontrol.2021.104683
   Web of Science ®Google Scholar
• Shabala S, Munns R. 2017. Salinity stress: physiological constraints and adaptive mechanisms. In: Shabala S, editor. Plant Stress Physiology. 2nd ed. Wallingford: CABI; p. 24–63. doi:10.1079/9781780647296.0024
   Google Scholar
• Shah R, Amaresan N, Patel P, Jinal HN, Krishnamurthy R. 2020. Isolation and characterization of Bacillus spp. endowed with multifarious plant growth-promoting traits and their potential effect on tomato (Lycopersicon esculentum) seedlings. Arab J Sci Eng. 45:4579–4587. doi:10.1007/s13369-020-04543-1
   Web of Science ®Google Scholar
• Shanmugam V, Kanoujia N. 2011. Biological management of vascular wilt of tomato caused by Fusarium oxysporum f.sp. lycospersici by plant growth-promoting rhizobacterial mixture. Biol Control. 57:85–93. doi:10.1016/j.biocontrol.2011.02.001
   Web of Science ®Google Scholar
• Singh D, Singh SK, Modi A, Sing PK, Zhimo Y, Kumar A. 2020. Impacts of agrochemicals on soil microbiology and food quality. Agrochemicals detection, treatment and remediation: pesticides and chemical fertilizers. 1st ed. Cambridge, MA: Butterworth-Heinemann. p. 101–116. doi:10.1016/B978-0-08-103017-2.00004-0.
   Google Scholar
• Topalović O, Hussain M, Heuer H. 2020. Plants and associated soil microbiota cooperatively suppress plant-parasitic nematodes. Front Microbiol. 11:313. doi:10.3389/fmicb.2020.00313
   PubMed Web of Science ®Google Scholar
• Vega-Gutiérrez TA, López-Urquídez AL, Allende-Molar R, Amarillas-Bueno LB, Romero-Gómez SJ, López-Orona CA. 2019. Aggressiveness and molecular characterization of Fusarium spp. associated with foot rot and wilt in Tomato in Sinaloa, Mexico. Biotech. 9:276. 3. doi:10.1007/s13205-019-1808-3
   Google Scholar
• Walkley A, Black IA. 1934. An examination of Degtjareff method for determining soil organic matter and a proposed modification of the chromic acid titration method. Soil Sci. 37:29–37. doi:10.1097/00010694-193401000-00003
   Web of Science ®Google Scholar
• Winding A, Binnerup SJ, Pritchard H. 2004. Non-target effects of bacterial biological control agents suppressing root pathogenic fungi. FEMS Microbiol Ecol. 47:129–141. doi:10.1016/S0168-6496(03)00261-7
   PubMed Web of Science ®Google Scholar
• Wisniewski M, Droby S, Norelli J, Liu J, Schena L. 2016. Alternative management technologies for postharvest disease control: the journey from simplicity to complexity. Postharvest Biol Technol. 122:3–10. doi:10.1016/j.postharvbio.2016.05.012
   Web of Science ®Google Scholar
• Xue QY, Chen Y, Li SM, Chen LF, Ding GC, Guo DW, Guo JH. 2009. Evaluation of the strains of Acinetobacter and Enterobacter as potential biocontrol agents against Ralstonia wilt of tomato. Biol Control. 48:252–258. doi:10.1016/j.biocontrol.2008.11.004
   Web of Science ®Google Scholar
• Zouari I, Masmoudi F, Medhioub K, Tounsi S, Trigui M. 2020. Biocontrol and plant growth-promoting potentiality of bacteria isolated from compost extract. Antonie van Leeuwenhoek. 113:2107–2122. doi:10.1007/s10482-020-01481-8
   PubMed Web of Science ®Google Scholar
• Zuluaga MYA, Milani KML, Miras-Moreno B, Lucini L, Valentinuzzi F, Mimmo T, Pii Y, Cesco S, Rodrigues EP, de Oliveira ALM. 2021. Inoculation with plant growth-promoting bacteria alters the rhizosphere functioning of tomato plants. Appl Soil Ecol. 158:103784. doi:10.1016/j.apsoil.2020.103784
   Web of Science ®Google Scholar