940
Views
25
CrossRef citations to date
0
Altmetric
Original Articles

The Potential of Proteomics Technologies for Crop Improvement under Drought Conditions

, &
Pages 471-490 | Published online: 08 Sep 2011

REFERENCES

  • Adam , J. 2008 . Transcriptome: connecting the genome to gene function . Nature Educ. , 1 : 1
  • Aebersold , R. and Mann , M. 2003 . Mass spectrometry-based proteomics . Nature , 422 : 198 – 207 .
  • Aggarwal , K. , Choe , L. H. and Lee , K. H. 2006 . Shotgun proteomics using the iTRAQ isobaric tags . Brief Funct. Genomic Proteomic. , 5 : 112 – 120 .
  • Agrawal , G. K. , Bourguignon , J. , Rolland , N. , Ephritikhine , G. , Ferro , M. , Jaquinod , M. and Alexiou , K. G. 2010 . Plant organelle proteomics: Collaborating for optimal cell function . Mass Spectr. Rev. , DOI 10.1002/mas
  • Agrawal , G. K. , Jwa , N. S. and Rakwal , R. 2009 . Rice proteomics: end of phase I and beginning of phase II . Proteomics. , 9 : 935 – 963 .
  • Agrawal , G. K. and Rakwal , R. 2006 . Rice proteomics: a cornerstone for cereal food crop proteomes . Mass Spectrom. Rev. , 25 : 1 – 53 .
  • Agrawal , G. K. and Rakwal , R. 2008 . Plant Proteomics: Technologies, Strategies, and Applications , Edited by: Agrawal , G. K. and Rakwal , R. Hoboken, NJ : John Wiley & Sons, Inc .
  • Akashi , K. , Miyake , C. and Yokota , A. 2001 . Citrulline, a novel compatible solute in drought-tolerant wild watermelon leaves, is an efficient hydroxyl radical scavenger . FEBS Lett , 508 : 438 – 442 .
  • Ali , G. M. and Komatsu , S. 2006 . Proteomic analysis of rice leaf sheath during drought stress . J. Proteome Res. , 5 : 396 – 403 .
  • Al-Kaisi , M. M. and Broner , I. 2009 . Crop Water Use and Growth Stages , CO, , USA : Publication number 4.715, Colorado State University Extension publication .
  • Alvarez , S. , Marsh , E. L. , Schroeder , S. G. and Schachtman , D. P. 2008 . Metabolomic and proteomic changes in the xylem sap of maize under drought . Plant Cell Environ , 31 : 325 – 340 .
  • Aranjuelo , I. , Molero , G. , Erice , G. , Avice , J. C. and Nogues , S. 2010 . Plant physiology and proteomics reveals the leaf response to drought in alfalfa (Medicago sativa L.) . J. Exp. Bot , 62 : 111 – 123 .
  • Bachi , A. and Bonaldi , T. 2008 . Quantitative proteomics as a new piece of the systems biology puzzle . J. Proteomics. , 71 : 357 – 367 .
  • Baginsky , S. , Hennig , L. , Zimmermann , P. and Gruissem , W. 2010 . Gene expression analysis, proteomics, and network discovery . Plant Physiol. , 152 : 402 – 410 .
  • Bantscheff , M. , Schirle , M. , Sweetman , G. , Rick , J. and Kuster , B. 2007 . Quantitative mass spectrometry in proteomics: a critical review . Anal Bioanal. Chem. , 389 : 1017 – 1031 .
  • Bartels , D. and Salamini , F. 2001 . Desiccation tolerance in the resurrection plant Craterostigma plantagineum. A contribution to the study of drought tolerance at the molecular level . Plant Physiol. , 127 : 1346 – 1353 .
  • Beck , E. H. , Fettig , S. , Knake , C. , Hartig , K. and Bhattarai , T. 2007 . Specific and unspecific responses of plants to cold and drought stress . J. Biosci. , 32 : 501 – 510 .
  • Beynon , R. J. and Pratt , J. M. 2005 . Metabolic labeling of proteins for proteomics . Mol. Cell Proteomics. , 4 : 857 – 872 .
  • Bhushan , D. , Pandey , A. , Choudhary , M. K. , Datta , A. , Chakraborty , S. and Chakraborty , N. 2007 . Comparative proteomics analysis of differentially expressed proteins in chickpea extracellular matrix during dehydration stress . Mol. Cell Proteomics. , 6 : 1868 – 1884 .
  • Boonjung , H. and Fukai , S. 1996 . Effects of soil water deficit at different growth stages on rice growth and yield under upland conditions. 2. Phenology, biomass production and yield . Field Crops Res , 48 : 47 – 55 .
  • Boudet , A. M. 2000 . Lignins and lignification: selected issues . Plant Physiol. Biochem. , 38 : 81 – 96 .
  • Boyer , J. S. 1982 . Plant productivity and environment . Science , 218 : 443 – 448 .
  • Brooker , F. L. , Anttonen , S. and Heagle , A. S. 1996 . Catechin, proanthocyanidin and lignin contents of loblolly pine (Pinus taeda) needles after chronic exposure to ozone . New Phytologist , 132 : 483 – 492 .
  • Brown , M. E. and Funk , C. C. 2008 . Climate. Food security under climate change . Science , 319 : 580 – 581 .
  • Burris , R. H. and Roberts , G. P. 1993 . Biological nitrogen fixation . Annu. Rev. Nutr. , 13 : 317 – 335 .
  • Cabuslay , G. , Ito , O. and Alejar , A. 1999 . “ Genotypic differences in physiological responses to water deficit in rice ” . In Genetic Improvement of Rice for Water-Limited Environments , Edited by: O’Toole , J. , Ito , O. and Hardy , B. 99 – 116 . International Rice Research Institute, Los Banõs .
  • Cannon , S. B. , May , G. D. and Jackson , S. A. 2009 . Three sequenced legume genomes and many crop species: rich opportunities for translational genomics . Plant Physiol. , 151 : 970 – 977 .
  • Carpentier , S. C. , Coemans , B. , Podevin , N. , Laukens , K. , Witters , E. , Matsumura , H. and Terauchi , R. 2008a . Functional genomics in a non-model crop: transcriptomics or proteomics? . Physiol. Plant. , 133 : 117 – 130 .
  • Carpentier , S. C. , Panis , B. , Vertommen , A. , Swennen , R. , Sergeant , K. , Renaut , J. and Laukens , K. 2008b . Proteome analysis of non-model plants: a challenging but powerful approach . Mass Spectrom. Rev. , 27 : 354 – 377 .
  • Caruso , G. , Cavaliere , C. , Foglia , P. , Gubbiotti , R. , Samperi , R. and Lagana , A. 2009 . Analysis of drought responsive proteins in wheat (Triticum durum) by 2D-PAGE and MALDI-TOF mass spectrometry . Plant Sci , 177 : 570 – 576 .
  • Cattivelli , L. , Rizza , F. , Badeck , F. W. , Mazzucotelli , E. , Mastrangelo , A. M. , Francia , E. and Mare , C. 2008 . Drought tolerance improvement in crop plants: An integrative view from breeding to genomics . Field Crops Res , 105 : 1 – 14 .
  • Chaves , M. M. 1991 . Effects of water deficits on carbon assimilation . J. Exp. Bot. , 42 : 1 – 16 .
  • Chaves , M. M. and Oliveira , M. M. 2004 . Mechanisms underlying plant resilience to water deficits: prospects for water-saving agriculture . J. Exp. Bot. , 55 : 2365 – 2384 .
  • Chaves , M. M. , Pereira , J. S. , Maroco , J. , Rodrigues , M. L. , Ricardo , C. P. , Osorio , M. L. and Carvalho , I. 2002 . How plants cope with water stress in the field. Photosynthesis and growth . Ann. Bot. , 89 : 907 – 916 .
  • Chen , S. and Harmon , A. C. 2006 . Advances in plant proteomics . Proteomics , 6 : 5504 – 5516 .
  • Choudhary , M. K. , Basu , D. , Datta , A. , Chakraborty , N. and Chakraborty , S. 2009 . Dehydration-responsive nuclear proteome of rice (Oryza sativa L.) illustrates protein network, novel regulators of cellular adaptation, and evolutionary perspective . Mol. Cell Proteomics. , 8 : 1579 – 1598 .
  • Ciais , P. , Reichstein , M. , Viovy , N. , Granier , A. , Ogee , J. , Allard , V. and Aubinet , M. 2005 . Europe-wide reduction in primary productivity caused by the heat and drought in 2003 . Nature , 437 : 529 – 533 .
  • Clifford , S. C. , Arndt , S. , Corlett , J. E. , Joshi , S. , Sankhla , N. , Popp , M. and Jones , H. G. 1998 . The role of solute accumulation, osmotic adjustment and changes in cell wall elasticity in drought tolerance in Ziziphus mauritiana (Lamk.) . J. Exp. Bot , 49 : 967 – 977 .
  • Costa , P. , Bahrman , N. , Frigerio , J. M. , Kremer , A. and Plomion , C. 1998 . Water-deficit-responsive proteins in maritime pine . Plant Mol. Biol. , 38 : 587 – 596 .
  • Coupe , S. A. , Sinclair , B. K. , Watson , L. M. , Heyes , J. A. and Eason , J. R. 2003 . Identification of dehydration-responsive cysteine proteases during post-harvest senescence of broccoli florets . J. Exp. Bot. , 54 : 1045 – 1056 .
  • DESA (Population Division of the Department of Economic and Social Affairs), United Nations Secretariat . June 2009 . World Population Prospects . The 2008 Revision
  • Devaiah , K. M. , Geetha , B. , Athmaram , T. N. and Basha , M. S. 2007 . Identification of two new genes from drought tolerant peanut up-regulated in response to drought . Plant Growth Regulator , 52 : 249 – 258 .
  • Domon , B. and Aebersold , R. 2006 . Mass spectrometry and protein analysis . Science , 312 : 212 – 217 .
  • Drame , K. N. , Clavel , D. , Repellin , A. , Passaquet , C. and Zuily-Fodil , Y. 2007 . Water deficit induces variation in expression of stress-responsive genes in two peanut (Arachis hypogaea L.) cultivars with different tolerance to drought . Plant Physiol. Biochem , 45 : 236 – 243 .
  • Echevarria-Zomeno , S. , Ariza , D. , Jorge , I. , Lenz , C. , Del Campo , A. , Jorrin , J. V. and Navarro , R. M. 2009 . Changes in the protein profile of Quercus ilex leaves in response to drought stress and recovery . J. Plant Physiol. , 166 : 233 – 245 .
  • Ekanayake , I. J. , DeDatta , S. K. and Steponkus , P. L. 1989 . Spikelet sterility and flowering response of rice to water stress at anthesis . Ann. Bot. , 63 : 257 – 264 .
  • El-Khatib , R. T. , Hamerlynck , E. P. , Gallardo , F. and Kirby , E. G. 2004 . Transgenic poplar characterized by ectopic expression of a pine cytosolic glutamine synthetase gene exhibits enhanced tolerance to water stress . Tree Physiol , 24 : 729 – 736 .
  • Ergen , N. , Thimmapuram , J. , Bohnert , H. and Budak , H. 2009 . Transcriptome pathways unique to dehydration tolerant relatives of modern wheat . Functional & Integrative Genomics. , 9 : 377 – 396 .
  • FAO (Food and Agriculture Organisation) . 2004 . Rome 2004, http://www.fao.org/spfs/about-spfs/mission-spfs/en/
  • FAO (Food and Agriculture Organisation) . 2008 . FAOSTAT . 2008
  • FAO (Food and Agriculture Organisation) . 2009 . Rome 2009, http://www.fao.org/spfs/about-spfs/mission-spfs/en/
  • Farooq , M. , Wahid , A. , Lee , D. , Ito , O. and Siddique , K. H. M. 2009 . Advances in Drought Resistance of Rice . Crit. Rev. Plant Sci. , 28 : 199 – 217 .
  • Fenn , J. B. , Mann , M. , Meng , C. K. , Wong , S. F. and Whitehouse , C. M. 1989 . Electrospray ionization for mass spectrometry of large biomolecules . Science , 246 : 64 – 71 .
  • Galen , C. , Rabenold , J. J. and Liscum , E. 2007 . Functional ecology of a blue light photoreceptor: effects of phototropin-1 on root growth enhance drought tolerance in Arabidopsis thaliana . New Phytol , 173 : 91 – 99 .
  • Garcia , M. G. , Busso , C. A. , Polci , P. , Garcia Girou , N. L. and Echenique , V. 2002 . Water relations and leaf growth rate of three Agropyron genotypes under water stress . Biocell. , 26 : 309 – 317 .
  • Gazanchian , A. , Hajheidari , M. , Sima , N. K. and Salekdeh , G. H. 2007 . Proteome response of Elymus elongatum to severe water stress and recovery . J. Exp. Bot. , 58 : 291 – 300 .
  • Glinski , M. and Weckwerth , W. 2006 . The role of mass spectrometry in plant systems biology . Mass Spectrom. Rev. , 25 : 173 – 214 .
  • Goff , S. A. , Ricke , D. , Lan , T. H. , Presting , G. , Wang , R. , Dunn , M. and Glazebrook , J. 2002 . A draft sequence of the rice genome (Oryza sativa L. ssp. japonica) . Science , 296 : 92 – 100 .
  • González , E. M. , Gordon , A. J. , James , C. L. and Arrese-Igor , C. 1995 . The role of sucrose synthase in the response of soybean nodules to drought . J. Exp. Bot. , 46 : 1515 – 1523 .
  • Gordon , A. J. , Minchin , F. R. , Skot , L. and James , C. L. 1997 . Stress-induced declines in soybean N2 fixation are related to nodule sucrose synthase activity . Plant Physiol , 114 : 937 – 946 .
  • Gorg , A. , Weiss , W. and Dunn , M. J. 2004 . Current two-dimensional electrophoresis technology for proteomics . Proteomics , 4 : 3665 – 3685 .
  • Gygi , S. P. , Rist , B. , Gerber , S. A. , Turecek , F. , Gelb , M. H. and Aebersold , R. 1999 . Quantitative analysis of complex protein mixtures using isotope-coded affinity tags . Nat. Biotechnol. , 17 : 994 – 999 .
  • Gygi , S. P. , Rochon , Y. , Franza , B. R. and Aebershold , R. 1999 . Correlation bet- ween protein and mRNA abundance in yeast . Mol. Cell. Biol. , 19 : 1720 – 1730 .
  • Hajduch , M. , Hearne , L. B. , Miernyk , J. A. , Casteel , J. E. , Joshi , T. , Agrawal , G. K. and Song , Z. 2010 . Systems analysis of seed filling in Arabidopsis: using general linear modeling to assess concordance of transcript and protein expression . Plant Physiol. , 152 : 2078 – 2087 .
  • Hajheidari , M. , Abdollahian-Noghabi , M. , Askari , H. , Heidari , M. , Sadeghian , S. Y. , Ober , E. S. and Salekdeh , G. H. 2005 . Proteome analysis of sugar beet leaves under drought stress . Proteomics , 5 : 950 – 960 .
  • Hajheidari , M. , Eivazi , A. , Buchanan , B. B. , Wong , J. H. , Majidi , I. and Salekdeh , G. H. 2007 . Proteomics uncovers a role for redox in drought tolerance in wheat . J. Proteome Res. , 6 : 1451 – 1460 .
  • Han , X. , Aslanian , A. and Yates , J. R. III. 2008 . Mass spectrometry for proteomics . Curr. Opin. Chem. Biol. , 12 : 483 – 490 .
  • Hanson , A. D. and Hitz , W. D. 1982 . Metabolic responses of mesophytes to plant water deficits . Ann. Rev. Plant Physiol. , 33 : 163 – 203 .
  • Hasegawa , P. M. , Bressan , R. A. , Zhu , J. K. and Bohnert , H. J. 2000 . Plant Cellular and Molecular Responses to High Salinity . Annu. Rev. Plant Physiol. Plant Mol. Biol. , 51 : 463 – 499 .
  • He , C. , Zhang , J. , Duan , A. , Sun , H. , Fu , L. and Zheng , S. 2007 . Proteins responding to drought and hightemperature stress in Pinus armandii Franch . Can. J. Bot. , 85 : 994 – 1001 .
  • Hirano , H. , Islam , N. and Kawasaki , H. 2004 . Technical aspects of functional proteomics in plants . Phytochemistry , 65 : 1487 – 1498 .
  • Holmberg , N. and Bülow , L. 1998 . Improving stress tolerance in plants by gene transfer . Trends Plant Sci , 3 : 61 – 66 .
  • Hu , Y. , Li , W. C. , Xu , Y. Q. , Li , G. J. , Liao , Y. and Fu , F. L. 2009 . Differential expression of candidate genes for lignin biosynthesis under drought stress in maize leaves . J. Appl. Genet. , 50 : 213 – 223 .
  • Ingram , J. and Bartels , D. 1996 . The molecular basis of dehydration tolerance in plants . Annu. Rev. Plant Physiol. Plant Mol. Biol. , 47 : 377 – 403 .
  • International Rice Genome Sequencing Project . 2005 . The map based sequence of the rice genome . Nature , 436 : 793 – 800 .
  • Inthapan , P. and Fukai , S. 1988 . Growth and yield of rice cultivars under sprinkler irrigation in south-eastern Queensland. 2. Comparison with maize and grain sorghum under wet and dry conditions . Aust. J. Exp. Agric. , 28 : 243 – 248 .
  • Issaq , H. J. , Chan , K. C. , Janini , G. M. , Conrads , T. P. and Veenstra , T. D. 2005 . Multidimensional separation of peptides for effective proteomic analysis . J. Chromatogr. B Analyt. Technol. Biomed. Life Sci. , 817 : 35 – 47 .
  • Jaakola , L. , Maatta-Riihinen , K. , Karenlampi , S. and Hohtola , A. 2004 . Activation of flavonoid biosynthesis by solar radiation in bilberry (Vaccinium myrtillus L) leaves . Planta , 218 : 721 – 728 .
  • Jorge , I. , Navarro , R. M. , Lenz , C. , Ariza , D. and Jorrin , J. 2006 . Variation in the holm oak leaf proteome at different plant developmental stages, between provenances and in response to drought stress . Proteomics , 6 : S207 – 214 . Suppl. 1
  • Jorrin , J. V. , Maldonado , A. M. and Castillejo , M. A. 2007 . Plant proteome analysis: a 2006 update . Proteomics , 7 : 2947 – 2962 .
  • Jorrin-Novo , J. V. , Maldonado , A. M. , Echevarria-Zomeno , S. , Valledor , L. , Castillejo , M. A. and Curto , M. 2009 . Plant proteomics update (2007-2008): Second-generation proteomic techniques, an appropriate experimental design, and data analysis to fulfill MIAPE standards, increase plant proteome coverage and expand biological knowledge . J. Proteomics. , 72 : 285 – 314 .
  • Julka , S. and Regnier , F. E. 2005 . Recent advancements in differential proteomics based on stable isotope coding . Brief Funct. Genomic Proteomic. , 4 : 158 – 177 .
  • Kamal , A. H. M. , Kim , K. H. , Shin , K. H. , Choi , J. S. , Baik , B. K. , Tsujimoto , H. and Heo , H. Y. 2010 . Abiotic stress responsive proteins of wheat grain determined using proteomics technique . Aust. J. Crop Sci. , 4 : 196 – 208 .
  • Kaminaka , H. , Morita , S. , Tokumoto , M. , Masumura , T. and Tanaka , K. 1999 . Differential gene expressions of rice superoxide dismutase isoforms to oxidative and environmental stresses . Free Radic. Res. , 31 : S219 – 225 . Suppl
  • Karas , M. and Hillenkamp , F. 1988 . Laser desorption ionization of proteins with molecular masses exceeding 10,000 daltons . Anal. Chem. , 60 : 2299 – 2301 .
  • Kasuga , M. , Liu , Q. , Miura , S. , Yamaguchi-Shinozaki , K. and Shinozaki , K. 1999 . Improving plant drought, salt, and freezing tolerance by gene transfer of a single stress-inducible transcription factor . Nat. Biotechnol. , 17 : 287 – 291 .
  • Kawasaki , S. , Miyake , C. , Kohchi , T. , Fujii , S. , Uchida , M. and Yokota , A. 2000 . Responses of wild watermelon to drought stress: accumulation of an ArgE homologue and citrulline in leaves during water deficits . Plant Cell Physiol , 41 : 864 – 873 .
  • Ke , Y. , Han , G. , He , H. and Li , J. 2009 . Differential regulation of proteins and phosphoproteins in rice under drought stress . Biochem. Biophys. Res. Commun. , 379 : 133 – 138 .
  • Kersten , B. , Agrawal , G. K. , Iwahashi , H. and Rakwal , R. 2006 . Plant phosphoproteomics: a long road ahead . Proteomics , 6 : 5517 – 5528 .
  • Kersten , B. , Burkle , L. , Kuhn , E. J. , Giavalisco , P. , Konthur , Z. , Lueking , A. and Walter , G. 2002 . Large-scale plant proteomics . Plant Mol. Biol. , 48 : 133 – 141 .
  • Khan , M. M. and Komatsu , S. 2004 . Rice proteomics: recent developments and analysis of nuclear proteins . Phytochemistry , 65 : 1671 – 1681 .
  • Khush , G. S. 2001 . Challenges for meeting the global food and nutrient needs in the new millennium . Proc. Nutr. Soc. , 60 : 15 – 26 .
  • Klose , J. 1975 . Protein mapping by combined isoelectric focusing and electrophoresis of mouse tissues. A novel approach to testing for induced point mutations in mammals . Humangenetik , 26 : 231 – 243 .
  • Kottapalli , K. R. , Rakwal , R. , Shibato , J. , Burow , G. , Tissue , D. , Burke , J. and Puppala , N. 2009 . Physiology and proteomics of the water-deficit stress response in three contrasting peanut genotypes . Plant Cell Environ , 32 : 380 – 407 .
  • Kreps , J. A. , Wu , Y. , Chang , H. S. , Zhu , T. , Wang , X. and Harper , J. F. 2002 . Transcriptome changes for Arabidopsis in response to salt, osmotic, and cold stress . Plant Physiol , 130 : 2129 – 2141 .
  • Kwon , S. J. , Choi , E. Y. , Choi , Y. J. , Ahn , J. H. and Park , O. K. 2006 . Proteomics studies of post-translational modifications in plants . J. Exp. Bot. , 57 : 1547 – 1551 .
  • Larrainzar , E. , Wienkoop , S. , Scherling , C. , Kempa , S. , Ladrera , R. , Arrese-Igor , C. , Weckwerth , W. and Gonzalez , E. M. 2009 . Carbon metabolism and bacteroid functioning are involved in the regulation of nitrogen fixation in Medicago truncatula under drought and recovery . Mol. Plant Microbe Interact , 22 : 1565 – 1576 .
  • Larrainzar , E. , Wienkoop , S. , Weckwerth , W. , Ladrera , R. , Arrese-Igor , C. and Gonzalez , E. M. 2007 . Medicago truncatula root nodule proteome analysis reveals differential plant and bacteroid responses to drought stress . Plant Physiol , 144 : 1495 – 1507 .
  • Lawlor , D. W. and Cornic , G. 2002 . Photosynthetic carbon assimilation and associated metabolism in relation to water deficits in higher plants . Plant Cell Environ , 25 : 275 – 294 .
  • Lawlor , D. W. and Tezara , W. 2009 . Causes of decreased photosynthetic rate and metabolic capacity in water-deficient leaf cells: a critical evaluation of mechanisms and integration of processes . Ann. Bot. , 103 : 561 – 579 .
  • Li , X. P. , Muller-Moule , P. , Gilmore , A. M. and Niyogi , K. K. 2002 . PsbS-dependent enhancement of feedback de-excitation protects photosystem II from photoinhibition . Proc. Natl. Acad. Sci. U S A. , 99 : 15222 – 15227 .
  • Liu , J. X. and Bennett , J. 2010 . Reversible and Irreversible Drought-Induced Changes in the Anther Proteome of Rice (Oryza sativa L.) Genotypes IR64 and Moroberekan . Mol. Plant , doi: 10.1093/mp/ssq039
  • Ludlow , M. M. 1980 . “ Adaptive significance of stomatal responses to water stress ” . In Adaptation of Plants to Water and High Temperature Stress , Edited by: Turner , N. C. and Kramer , P. J. 123 – 138 . New York : Wiley .
  • Mahajan , S. and Tuteja , N. 2005 . Cold, salinity and drought stresses: An overview . Arch. Biochem. Biophys. , 444 : 139 – 158 .
  • Miao , Y. , Lv , D. , Wang , P. , Wang , X. C. , Chen , J. , Miao , C. and Song , C. P. 2006 . An Arabidopsis glutathione peroxidase functions as both a redox transducer and a scavenger in abscisic acid and drought stress responses . Plant Cell , 18 : 2749 – 2766 .
  • Miller , G. , Suzuki , N. , Ciftci-Yilmaz , S. and Mittler , R. 2010 . Reactive oxygen species homeostasis and signalling during drought and salinity stresses . Plant Cell Environ , 33 : 453 – 467 .
  • Miller , I. , Crawford , J. and Gianazza , E. 2006 . Protein stains for proteomic applications: which, when, why? . Proteomics , 6 : 5385 – 5408 .
  • Mitra , J. 2001 . Genetics and gentic improvement of drought resistance in crop plants . Current Science , 80 : 758 – 763 .
  • Mittler , R. 2002 . Oxidative stress, antioxidants and stress tolerance . Trends Plant Sci , 7 : 405 – 410 .
  • Mittler , R. 2006 . Abiotic stress, the field environment and stress combination . Trends Plant Sci , 11 : 15 – 19 .
  • Mittler , R. and Blumwald , E. 2010 . Genetic engineering for modern agriculture: challenges and perspectives . Annu. Rev. Plant Biol. , 61 : 443 – 462 .
  • Mochida , K. and Shinozaki , K. 2010 . Genomics and bioinformatics resources for crop improvement . Plant Cell Physiol , 51 : 497 – 523 .
  • Moller , I. M. , Jensen , P. E. and Hansson , A. 2007 . Oxidative modifications to cellular components in plants . Annu. Rev. Plant Biol. , 58 : 459 – 481 .
  • Montero-Tavera , V. , Ruiz-Medrano , R. and Xoconostle-Cazares , B. 2008 . Systemic nature of drought-tolerance in common bean . Plant Signal Behav , 3 : 663 – 666 .
  • Moore , J. P. , Le , N. T. , Brandt , W. F. , Driouich , A. and Farrant , J. M. 2009 . Towards a systems-based understanding of plant desiccation tolerance . Trends Plant Sci. , 14 : 110 – 117 .
  • Morell , M. and Copeland , L. 1985 . Sucrose synthase of soybean nodules . Plant Physiol , 78 : 149 – 154 .
  • Morgante , M. and Salamini , F. 2003 . From plant genomics to breeding practice . Curr. Opin. Biotechnol. , 14 : 214 – 219 .
  • Moura , J. C. , Bonine , C. A. , de Oliveira Fernandes Viana , J. , Dornelas , M. C. and Mazzafera , P. 2010 . Abiotic and biotic stresses and changes in the lignin content and composition in plants . J. Integr. Plant Biol. , 52 : 360 – 376 .
  • Nakashima , K. , Abe , H. , Kasuga , M. , Yamaguchi-Shinozaki , K. and Shinozaki , K. 1999 . Drought-responsive gene expression and stress tolerance in plants . Tanpakushitsu Kakusan Koso , 44 : 2199 – 2205 .
  • Nouri , M. Z. and Komatsu , S. 2010 . Comparative analysis of soybean plasma membrane proteins under osmotic stress using gel-based and LC MS/MS-based proteomics approaches . Proteomics , 10 : 1930 – 1945 .
  • NSF . 2010 . Drought May Threaten Much of Globe Within Decades . http://www.nsf.gov/news/news_summ.jsp?cntn_id=117866&WT.mc_id=USNSF_51&WT.mc_ev=click
  • O’Farrell , P. H. 1975 . High resolution two-dimensional electrophoresis of proteins . J. Biol. Chem. , 250 : 4007 – 4021 .
  • O’Toole , J. C. and Namuco , O. S. 1983 . Role of panicle exertion in water stress induced sterility . Crop Sci , 23 : 1093 – 1097 .
  • Oeljeklaus , S. , Meyer , H. E. and Warscheid , B. 2009 . Advancements in plant proteomics using quantitative mass spectrometry . J. Proteomics. , 72 : 545 – 554 .
  • Oliver , M. J. , Jain , R. , Balbuena , T. S. , Agrawal , G. , Gasulla , F. and Thelen , J. J. 2010 . Proteome analysis of leaves of the desiccation-tolerant grass, Sporobolus stapfianus, in response to dehydration . Phytochemistry , doi:10.1016/j.phytochem.2010.10.020
  • Ong , S. E. , Blagoev , B. , Kratchmarova , I. , Kristensen , D. B. , Steen , H. , Pandey , A. and Mann , M. 2002 . Stable isotope labeling by amino acids in cell culture, SILAC, as a simple and accurate approach to expression proteomics . Mol. Cell Proteomics. , 1 : 376 – 386 .
  • Pandey , A. , Chakraborty , S. , Datta , A. and Chakraborty , N. 2008 . Proteomics approach to identify dehydration responsive nuclear proteins from chickpea (Cicer arietinum L.) . Mol. Cell Proteomics. , 7 : 88 – 107 .
  • Pandey , A. , Choudhary , M. K. , Bhushan , D. , Chattopadhyay , A. , Chakraborty , S. , Datta , A. and Chakraborty , N. 2006 . The nuclear proteome of chickpea (Cicer arietinum L.) reveals predicted and unexpected proteins . J.Proteome Res , 5 : 3301 – 3311 .
  • Pandey , A. and Mann , M. 2000 . Proteomics to study genes and genomes . Nature , 405 : 837 – 846 .
  • Peng , Z. , Wang , M. , Li , F. , Lv , H. , Li , C. and Xia , G. 2009 . A proteomic study of the response to salinity and drought stress in an introgression strain of bread wheat . Mol. Cell Proteomics. , 8 : 2676 – 2686 .
  • Pimentel , D. and Patzek , T. 2008 . “ Ethanol production using corn, switchgrass and wood; biodiesel production using soybean ” . In Biofuels, Solar and Wind as Renewable Energy Systems , Edited by: Pimentel , D. 373 – 394 . The Netherlands : Springer .
  • Pinheiro , C. , Chaves , M. M. and Ricardo , C. P. 2001 . Alterations in carbon and nitrogen metabolism induced by water deficit in the stems and leaves of Lupinus albus L . J. Exp. Bot , 52 : 1063 – 1070 .
  • Pinheiro , C. , Kehr , J. and Ricardo , C. P. 2005 . Effect of water stress on lupin stem protein analysed by two-dimensional gel electrophoresis . Planta , 221 : 716 – 728 .
  • Plomion , C. , Lalanne , C. , Claverol , S. , Meddour , H. , Kohler , A. , Bogeat-Triboulot , M. B. and Barre , A. 2006 . Mapping the proteome of poplar and application to the discovery of drought-stress responsive proteins . Proteomics , 6 : 6509 – 6527 .
  • Quartacci , M. F. , Forli , M. , Rascio , N. , Dalla Vecchia , F. , Bochicchio , A. and Navari-Izzo , F. 1997 . Desiccation-tolerant Sporobolus stapfianus: lipid composition and cellular ultrastructure during dehydration and rehydration . J. Exp. Bot. , 48 : 1269 – 1279 .
  • Repetto , O. , Rogniaux , H. , Firnhaber , C. , Zuber , H. , Kuster , H. , Larre , C. , Thompson , R. and Gallardo , K. 2008 . Exploring the nuclear proteome of Medicago truncatula at the switch towards seed filling . Plant J , 56 : 398 – 410 .
  • Riccardi , F. , Gazeau , P. , de Vienne , D. and Zivy , M. 1998 . Protein changes in response to progressive water deficit in maize. Quantitative variation and polypeptide identification . Plant Physiol , 117 : 1253 – 1263 .
  • Riccardi , F. , Gazeau , P. , Jacquemot , M. P. , Vincent , D. and Zivy , M. 2004 . Deciphering genetic variations of proteome responses to water deficit in maize leaves . Plant Physiol. Biochem , 42 : 1003 – 1011 .
  • Rizhsky , L. , Liang , H. and Mittler , R. 2002 . The combined effect of drought stress and heat shock on gene expression in tobacco . Plant Physiol , 130 : 1143 – 1151 .
  • Rohila , J. S. , Chen , M. , Chen , S. , Chen , J. , Cerny , R. , Dardick , C. and Canlas , P. 2006 . Protein-protein interactions of tandem affinity purification-tagged protein kinases in rice . Plant J. , 46 : 1 – 13 .
  • Rohila , J. S. , Chen , M. , Chen , S. , Chen , J. , Cerny , R. L. , Dardick , C. and Canlas , P. 2009 . Protein-protein interactions of tandem affinity purified protein kinases from rice . PLoS One , 4 : e6685
  • Rohila , J. S. and Yang , Y. 2007 . Rice mitogen-activated protein kinase gene family and its role in biotic and abiotic stress response . J. Integr. Plant Biol. , 49 : 751 – 759 .
  • Ross , P. L. , Huang , Y. N. , Marchese , J. N. , Williamson , B. , Parker , K. , Hattan , S. and Khainovski , N. 2004 . Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents . Mol. Cell Proteomics. , 3 : 1154 – 1169 .
  • Rossignol , M. , Peltier , J. B. , Mock , H. P. , Matros , A. , Maldonado , A. M. and Jorrin , J. V. 2006 . Plant proteome analysis: a 2004-2006 update . Proteomics , 6 : 5529 – 5548 .
  • Salekdeh , G. H. , Siopongco , J. , Wade , L. J. , Ghareyazie , B. and Bennett , J. 2002 . Proteomic analysis of rice leaves during drought stress and recovery . Proteomics , 2 : 1131 – 1145 .
  • Schmutz , J. , Cannon , S. B. , Schlueter , J. , Ma , J. , Mitros , T. , Nelson , W. and Hyten , D. L. 2010 . Genome sequence of the palaeopolyploid soybean . Nature , 463 : 178 – 183 .
  • Schulze , W. X. and Usadel , B. 2010 . Quantitation in mass-spectrometry-based proteomics . Annu. Rev. Plant Biol. , 61 : 491 – 516 .
  • Shao , H. B. , Chu , L. Y. , Jaleel , C. A. , Manivannan , P. , Panneerselvam , R. and Shao , M. A. 2009 . Understanding water deficit stress-induced changes in the basic metabolism of higher plants - biotechnologically and sustainably improving agriculture and the eco environment in arid regions of the globe . Crit. Rev. Biotechnol. , 29 : 131 – 151 .
  • Shao , H. B. , Guo , Q. J. , Chu , L. Y. , Zhao , X. N. , Su , Z. L. , Hu , Y. C. and Cheng , J. F. 2007 . Understanding molecular mechanism of higher plant plasticity under abiotic stress . Colloids Surf. B. Biointerfaces. , 54 : 37 – 45 .
  • Sharp , R. E. and Davies , W. J. 1989 . “ Regulation of growth and development of plants growing with a restricted supply of water ” . In Plants Under Stress , Edited by: Jones , H. G. , Flowers , T. L. and Jones , M. B. 71 – 93 . London, , UK : Cambridge University Press .
  • Specht , J. E. , Hume , D. J. and Kumudini , S. V. 1999 . Soybean yield potential - A genetic and physiological perspective . Crop Sci , 39 : 1560 – 1570 .
  • Stolf-Moreira , R. , Medri , M. E. , Neumaier , N. , Lemos , N. G. , Pimenta , J. A. , Tobita , S. and Brogin , R. L. 2010 . Genet. Mol. Res. , 9 : 1946 – 1956 .
  • Taj , G. , Agarwal , P. , Grant , M. and Kumar , A. 2010 . MAPK machinery in plants: Recognition and response to different stresses through multiple signal transduction pathways . Plant Signal Behav. , PMID: 20980831
  • Taylor , S. H. , Ripley , B. S. , Woodward , F. I. and Osborne , C. P. 2010 . Drought limitation of photosynthesis differs between C(3) and C(4) grass species in a comparative experiment . Plant Cell Environ , DOI: 10.1111/j.1365-3040.2010.02226.x
  • Thelen , J. J. and Peck , S. C. 2007 . Quantitative proteomics in plants: choices in abundance . Plant Cell. , 19 : 3339 – 3346 .
  • Thiellement , H. , Bahrman , N. , Damerval , C. , Plomion , C. , Rossignol , M. , Santoni , V. , de Vienne , D. and Zivy , M. 1999 . Proteomics for genetic and physiological studies in plants . Electrophoresis , 20 : 2013 – 2026 .
  • Thompson , A. , Schafer , J. , Kuhn , K. , Kienle , S. , Schwarz , J. , Schmidt , G. and Neumann , T. 2003 . Tandem mass tags: a novel quantification strategy for comparative analysis of complex protein mixtures by MS/MS . Anal. Chem. , 75 : 1895 – 1904 .
  • Tuberosa , R. and Salvi , S. 2006 . Genomics-based approaches to improve drought tolerance of crops . Trends in Plant Science. , 11 : 405 – 412 .
  • Turner , N. C. , O’Toole , J. C. , Cruz , R. T. , Namuco , O. S. and Ahmad , S. 1986 . Response of seven diverse rice cultivars to water deficits. I. Stress development, canopy temperature, leaf rolling and growth . Field Crops Res , 13 : 257 – 271 .
  • Tuskan , G. A. , Difazio , S. , Jansson , S. , Bohlmann , J. , Grigoriev , I. , Hellsten , U. and Putnam , N. 2006 . The genome of black cottonwood, Populus trichocarpa (Torr. & Gray) . Science. , 313 : 1596 – 1604 .
  • Unlu , M. , Morgan , M. E. and Minden , J. S. 1997 . Difference gel electrophoresis: a single gel method for detecting changes in protein extracts . Electrophoresis , 18 : 2071 – 2077 .
  • Van den Bergh , G and Arckens , L. 2004 . Fluorescent two-dimensional difference gel electrophoresis unveils the potential of gel-based proteomics . Curr. Opin. Biotechnol. , 15 : 38 – 43 .
  • Van den Bergh , G and Arckens , L. 2005 . Recent advances in 2D electrophoresis: an array of possibilities . Expert Rev. Proteomics. , 2 : 243 – 252 .
  • Villar-Salvador , P. , Planelles , R. , Oliet , J. , Penuelas-Rubira , J. L. , Jacobs , D. F. and Gonzalez , M. 2004 . Drought tolerance and transplanting performance of holm oak (Quercus ilex) seedlings after drought hardening in the nursery . Tree Physiol , 24 : 1147 – 1155 .
  • Vincent , D. , Lapierre , C. , Pollet , B. , Cornic , G. , Negroni , L. and Zivy , M. 2005 . Water deficits affect caffeate O-methyltransferase, lignification, and related enzymes in maize leaves. A proteomic investigation . Plant Physiol , 137 : 949 – 960 .
  • Viswanathan , S. , Unlu , M. and Minden , J. S. 2006 . Two-dimensional difference gel electrophoresis . Nature Protocols , 1 : 1351 – 1358 .
  • Wan , J. , Torres , M. , Ganapathy , A. , Thelen , J. , DaGue , B. B. , Mooney , B. , Xu , D. and Stacey , G. 2005 . Proteomic analysis of soybean root hairs after infection by Bradyrhizobium japonicum . Mol. Plant-Microbe Interact. , 18 : 458 – 467 .
  • Washburn , M. P. , Wolters , D. and Yates , J. R. III. 2001 . Large-scale analysis of the yeast proteome by multidimensional protein identification technology . Nat. Biotechnol. , 19 : 242 – 247 .
  • Westermeier , R. and Marouga , R. 2005 . Protein detection methods in proteomics research . Biosci. Rep. , 25 : 19 – 32 .
  • Wittmann-Liebold , B. , Graack , H. R. and Pohl , T. 2006 . Two-dimensional gel electrophoresis as tool for proteomics studies in combination with protein identification by mass spectrometry . Proteomics , 6 : 4688 – 4703 .
  • Xiong , L. and Zhu , J. K. 2002 . Molecular and genetic aspects of plant responses to osmotic stress . Plant Cell Environ , 25 : 131 – 139 .
  • Xu , G. , Chunyang Li , C. Y. and Yinan Yao , Y. N. 2009 . Proteomics analysis of drought stress-responsive proteins in Hippophae rhamnoides L . Plant Molecular Biology Reporter , 27 : 153 – 161 .
  • Yamaguchi , M. , Valliyodan , B. , Zhang , J. , Lenoble , M. E. , Yu , O. , Rogers , E. E. , Nguyen , H. T. and Sharp , R. E. 2010 . Regulation of growth response to water stress in the soybean primary root. I. Proteomic analysis reveals region-specific regulation of phenylpropanoid metabolism and control of free iron in the elongation zone . Plant Cell Environ , 33 : 223 – 243 .
  • Yan , S. , Tang , Z. , Su , W. and Sun , W. 2005 . Proteomic analysis of salt stress-responsive proteins in rice root . Proteomics , 5 : 235 – 244 .
  • Yates , J. R. III. 2004 . Mass spectral analysis in proteomics . Annu. Rev. Biophys. Biomol. Struct. , 33 : 297 – 316 .
  • Ye , X. , Luke , B. , Andresson , T. and Blonder , J. 2009 . 18O stable isotope labeling in MS-based proteomics . Brief Funct. Genomic Proteomic , 8 : 136 – 144 .
  • Yoshimura , K. , Masuda , A. , Kuwano , M. , Yokota , A. and Akashi , K. 2008 . Programmed proteome response for drought avoidance/tolerance in the root of a C(3) xerophyte (wild watermelon) under water deficits . Plant Cell Physiol , 49 : 226 – 241 .
  • Yu , J. , Hu , S. , Wang , J. , Wong , G. K. , Li , S. , Liu , B. and Deng , Y. 2002 . A draft sequence of the rice genome (Oryza sativa L. ssp. indica) . Science , 296 : 79 – 92 .
  • Zahran , H. H. 1999 . Rhizobium-legume symbiosis and nitrogen fixation under severe conditions and in an arid climate . Microbiol. Mol. Biol. Rev. , 63 : 968 – 989 .
  • Zargar , S. M. , Nazir , M. , Cho , K. , Kim , D. W. , Jones , O. A. H. , Sarkar , A. and Agrawal , S. B. 2010 . “ Impact of climatic changes on crop agriculture: OMICS for sustainability and next generation crops ” . In Sustainable Agriculture and New Bio-Technologies , Edited by: Noureddine , B. Taylor & Francis (CRC Press . in Press)
  • Zhang , S. , Chen , F. , Peng , S. , Ma , W. , Korpelainen , H. and Li , C. 2010 . Comparative physiological, ultrastructural and proteomic analyses reveal sexual differences in the responses of Populus cathayana under drought stress . Proteomics , 10 : 2661 – 2677 .
  • Zhu , J. K. 2001 . Cell signaling under salt, water and cold stresses . Curr. Opin. Plant Biol. , 4 : 401 – 406 .
  • Zhu , J. , Alvarez , S. , Marsh , E. L. , LeNoble , M. E. , Cho , I. J. , Sivaguru , M. and Chen , S. 2007 . Cell wall proteome in the maize primary root elongation zone. II. region-specific changes in water soluble and lightly ionically bound proteins under water deficit . Plant Physiol. , 145 : 1533 – 1548 .
  • Zhu , J. , Fu , X. , Koo , Y. D. , Zhu , J. K. , Jenney , F. E. Jr. , Adams , M. W. and Zhu , Y. 2007 . An enhancer mutant of Arabidopsis salt overly sensitive 3 mediates both ion homeostasis and the oxidative stress response . Mol. Cell Biol. , 27 : 5214 – 5224 .

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.