References and Footnotes
- Bresler , S. E. and Talmud , D. L. 1944 . Comptes Rendus XLIII , : 310 – 314 .
- Kauzmann . 1959 . Adv. Protein Chem. , 14 : 1 – 63 .
- Perutz , M. F. , Kendrew , J. C. and Watson , H. C. 1965 . J. Mol. Biol. , 13 : 669 – 678 .
- Rose , G. D. 1978 . Nature , 272 : 586 – 590 .
- Meirovitch , H. and Scheraga , H. A. 1981 . Macromolecules , 14 : 340 – 345 .
- Kytte , J. and Doolittle , R. F. 1982 . J. Mol. Biol. , 157 : 105 – 132 .
- Kuntz , I. D. 1972 . J. Am. Chem. Soc. , 94 : 4009 – 4012 .
- Rose , G. D. and Seltzer , J. P. 1977 . J. Mol. Biol. , 113 : 153 – 164 .
- Rose , G. D. and Roy , S. 1980 . Proc. Natl. Acad. Sci. USA , 77 : 4643 – 4647 .
- Kidera , A. , Konishi , Y. , Ooi , T. and Scheraga , H. A. 1985 . J. Protein Chem. , 4 : 265 – 297 .
- Huang , E. S. , Subbiah , S. and Levitt , M. 1995 . J. Mol. Biol. , 252 : 709 – 720 .
- Mandell , A. J. , Selz , K. A. and Shlesinger , M. F. 1997 . Physica , 244 : 254 – 262 .
- Rackovsky , S. 1998 . Proc. Natl. Acad. Sci. USA , 95 : 8580 – 8584 .
- Grigoriev , I. V. and Kim , S. 1999 . Proc. Natl. Acad. , USA96 : 14318 – 14323 .
- Murray , K. B. , Gorse , D. and Thornton , J. M. 2002 . J. Mol. Biol. , 316 : 341 – 363 .
- White , S. H. and Jacobs , R. E. 1990 . Biophysical Journal , 57 : 911 – 921 .
- Pande , V. J. , Grosberg , A. Y. and Tanaka , T. 1994 . Proc. Natl. Acad. Sci. USA , 91 : 12972 – 12975 .
- Weiss , O. , Jimenez-Montano , M. A. and Herzel , H. 2000 . J. Theor. Biol. , 206 : 379 – 386 .
- Huang , Y. and Xiao , Y. 2003 . Chaos, Solitons and Fractals , 17 : 895 – 900 .
- Yang , A. and Honig , B. 2000 . J. Mol. Biol. , 301 : 692 – 711 .
- Ptitsyn , O. B. and Volkenstein , M. V. 1986 . J. Biomol. Struct. Dyn. , 4 : 137 – 156 .
- Kimura , M. 1983 . The Neutral Theory of Molecular Evolution. Cambridge , , UK : Cambridge University Press .
- Murzin , A. G. , Brenner , S. E. , Hubbard , T. and Chothia , C. 1995 . J. Mol. Biol. , 247 : 536 – 540 .
- Chothia , C. and Lesk , A. M. 1986 . EMBO , 5 : 823 – 826 .
- Bashford , D. , Chothia , C. and Lesk , A. M. 1987 . J. Mol. Biol. , 196 : 199 – 216 .
- Aronson , R. E. , Royer , W. E. Jr. and Hendrickson , W. A. 1994 . Protein Science , 3 : 1706 – 1711 .
- Bastolla , U. , Porto , M. , Roman , H. E. and Vendruscolo , M. 2003 . J. Mol. Evol. , 56 : 243 – 254 .
- Perutz , M. F. 1983 . Biol. Evol. , 1 : 1 – 28 .
- Hao , M. H. , Rackovsky , S. , Pincus , M. R. and Scheraga , H. A. 1992 . Proc. Natl. Acad. Sci. USA , 89 : 4996 – 5001 .
- Silverman , B. D. 2003 . Proteins: Struct. Funct. Genet. , 53 : 880 – 888 .
- Fraczkiewicz , R. and Braun , W. 1998 . J. Comp. Chem. , 19 : 319 – 333 . http://www.scsb.utmb.edu/getarea/area_man.html
- Neumaier , A. , Huyer , W. and Bomberg-Bauer , E. http://solon.cma.univie.ac.at/~neum/software/protein/aminoacids.html.
- All calculations have been performed with MATLAB Version 6, The Mathworks Inc . 2000 . 13 – 47 . Natick MA 01760. The detailed description of the fast finite Fourier transform has been included at the request of the referees. For further information see, MATLAB, The Language of Technical Computing, November, fifth printing, sections 13–42 to
- Park , B. and Levitt , M. 1996 . J. Mol. Biol. , 258 : 367 – 392 . http://dd.stanford.edu/ddownload.cgi?hg_structal
- Berezovsky , I. N. , Kirzhner , A. , Kirzhner , V. M. and Trifonov , E. N. 2003 . Biomol. Struct. Dyn. , 21 : 327 – 339 .
- Shindyalov , I. N. and Bourne , P. E. 1998 . Protein Engineering , 11 : 739 – 747 . http://cl.sdsc.edu/ce.html
- Zhou , R. , Silverman , B. D. , Royyuru , A. K. and Athma , P. 2003 . Proteins: Structure, Function, and Genetics , 52 : 561 – 572 .
- Kaiser , E. T. and Kezdy , F. J. 1984 . Science , 223 : 249 – 255 .
- Bryson , J. W. , Betz , S. F. , Lu , H. S. , Suich , D. J. , Zhou , H. X. , O'Neill , K. T. and DeGrado , W. F. 1995 . Science , 270 : 935 – 941 .