Side Chain Dynamics and Alternative Hydrogen Bonding in the Mechanism of Protein Thermostabilization

References and Footnotes

• Jaenicke , R. 1991 . Eur. J. Biochem. , 202 : 715 – 728 .
   PubMedGoogle Scholar
• Adams , M. W. W. and Kelly , R. M. 1995 . Chem. Eng. News , 73 : 32 – 42 .
   Web of Science ®Google Scholar
• Russel , R. J. and Taylor , G. L. 1995 . Curr. Opin. Biotechnol. , 6 : 370 – 374 .
   PubMedGoogle Scholar
• Jaenicke , R. and Böhm , G. 1998 . Curr. Opin. Struct. Biol. , 8 : 738 – 748 .
   PubMed Web of Science ®Google Scholar
• Dill , K. A. 1990 . Biochemistry , 29 : 7133 – 7155 .
   PubMed Web of Science ®Google Scholar
• Creighton , T. E. 1991 . Curr. Opin. Struct. Biol. , 1 : 5 – 16 .
   Web of Science ®Google Scholar
• Rose , G. D. and Wolfenden , R. 1993 . Ann. Rev. Biophys. Biomol. Str. , 22 : 381 – 415 .
   PubMedGoogle Scholar
• Chakrabartty , A. and Baldwin , R. L. 1995 . Adv. Protein Chem. , 46 : 141 – 176 .
   PubMedGoogle Scholar
• Querol , E. , Perez-Pons , J. A. and Mozo-Villarias , A. 1996 . Protein Eng. , 9 : 265 – 271 .
   PubMedGoogle Scholar
• Gromiha , M. M. , Oobatake , M. and Sarai , A. 1999 . Biophys. Chem. , 82 : 51 – 67 .
   PubMed Web of Science ®Google Scholar
• Gromiha , M. M. and Selvaraj , S. 2004 . Prog. Biophis. & Mol. Biol. , 86 : 235 – 277 .
   PubMed Web of Science ®Google Scholar
• Vogt , G. , Woell , S. and Argos , P. 1997 . J. Mol. Biol. , 269 : 631 – 643 .
   PubMed Web of Science ®Google Scholar
• Perutz , M. F. 1978 . Science , 201 : 1187 – 1191 .
   PubMed Web of Science ®Google Scholar
• Spassov , V. Z. , Karshikoff , A. D. and Ladenstein , R. 1994 . Protein Sci. , 3 : 1556 – 1569 .
   PubMed Web of Science ®Google Scholar
• Elcock , A. H. 1998 . J. Mol. Biol. , 284 : 489 – 502 .
   PubMed Web of Science ®Google Scholar
• Xiao , L. and Honig , B. 1999 . J. Mol. Biol. , 289 : 1435 – 1444 .
   PubMed Web of Science ®Google Scholar
• Grimsley , G. R. , Shaw , K. L. , Fee , L. R. , Alston , R. W. , Huyghues-Despointes , B. M. P. , Thurlkill , R. L. , Scholtz , J. M. and Pace , C. N. 1999 . Protein Sci. , 8 : 1843 – 1849 .
   PubMed Web of Science ®Google Scholar
• Pace , C. N. 2000 . Nature Struct. Biol. , 7 : 345 – 346 .
   PubMedGoogle Scholar
• Pace , C. N. , Alston , R. W. and Shaw , K. L. 2000 . Protein Sci. , 9 : 1395 – 1398 .
   PubMed Web of Science ®Google Scholar
• Kumar , S. , Tsai , Ch.-J. and Nussinov , R. 2000 . Protein Eng. , 13 : 179 – 191 .
   PubMedGoogle Scholar
• Perl , D. and Schmid , F. X. 2000 . J. Mol. Biol. , 313 : 343 – 357 .
   Google Scholar
• Chakravarty , S. and Vardarajan , R. 2002 . Biochemistry , 41 : 8152 – 8161 .
   PubMed Web of Science ®Google Scholar
• Wunderlich , M. , Martin , A. and Schmid , F. X. 2005 . J. Mol. Biol. , 347 : 1063 – 1076 .
   PubMedGoogle Scholar
• Privalov , P. L. and Khechinashvili , N. N. 1974 . J. Mol. Biol. , 86 : 665 – 684 .
   PubMed Web of Science ®Google Scholar
• Chothia , C. 1975 . Nature , 254 : 304 – 308 .
   PubMed Web of Science ®Google Scholar
• Horovitz , A. , Serrano , L. , Avron , B. , Bycroft , M. and Fersht , A. R. 1990 . J. Mol. Biol. , 216 : 1031 – 1044 .
   PubMed Web of Science ®Google Scholar
• Dao-Pin , S. , Soderlind , E. , Baase , W. A. , Wozniak , J. A. , Sauer , U. and Matthews , B. W. 1991 . J. Mol. Biol. , 221 : 873 – 887 .
   PubMed Web of Science ®Google Scholar
• Matthews , B. W. 1993 . Curr. Opin. Struct. Biol. , 3 : 589 – 593 .
   Google Scholar
• Hendsch , Z. S. and Tidor , B. 1994 . Protein Sci. , 3 : 211 – 216 .
   PubMed Web of Science ®Google Scholar
• Meeker , A. K. , Garcia-Moreno , B. E. and Shortle , D. 1996 . Biochemistry , 35 : 6443 – 6449 .
   PubMed Web of Science ®Google Scholar
• Loladze , V. V. and Makhatadze , G. I. 1996 . Protein Sci. , 11 : 174 – 177 .
   Google Scholar
• van Gunsteren , W. F. and Karplus , M. 1981 . Nature , 293 : 677 – 678 .
   PubMed Web of Science ®Google Scholar
• Karplus , M. and McCammon , J. A. 1983 . Ann. Rev. Biochem. , 53 : 263 – 300 .
   Web of Science ®Google Scholar
• Lazaridis , T. , Lee , I. and Karplus , M. 1997 . Protein Sci. , 6 : 2589 – 2605 .
   PubMedGoogle Scholar
• Mueller , U. , Perl , D. , Schmid , F. X. and Heinemann , U. 2000 . J. Mol. Biol. , 297 : 975 – 988 .
   PubMedGoogle Scholar
• Delbrück , H. , Mueller , U. , Perl , D. , Schmid , F. X. and Heinemann , U. 2001 . J. Mol. Biol. , 313 : 359 – 369 .
   PubMedGoogle Scholar
• Gallagher , T. , Alexander , P. , Bryan , Ph. and Gilliland , G. L. 1994 . Biochemistry , 33 : 4721 – 4729 .
   PubMed Web of Science ®Google Scholar
• Schnuchel , A. , Wiltscheck , R. , Czisch , M. , Herrier , M. , Willimsky , G. , Graumann , P. , Marahiel , M. A. and Holak , T. A. 1993 . Nature , 364 : 169 – 171 .
   PubMed Web of Science ®Google Scholar
• Kremer , W. , Schuler , B. , Harrieder , S. , Geyer , M. , Gronwald , W. , Welker , C. , Jaenicke , R. and Kalbitzer , H. R. 2001 . Eur. J. Biochem. , 268 : 2527 – 2539 .
   PubMedGoogle Scholar
• Bernstein , F. C. , Koetzle , T. F. , Williams , G. , Mayer , E. F. , Bryce , M. D. , Rodgers , J. R. , Kennard , O. , Simanouwchi , T. and Tasumi , M. 1977 . J. Mol. Biol. , 112 : 535 – 542 .
   PubMed Web of Science ®Google Scholar
• Wassenberg , D. , Welker , C. and Jaenicke , R. 1999 . J. Mol. Biol. , 289 : 187 – 193 .
   PubMedGoogle Scholar
• Schindelin , H. , Marahiel , M. A. and Heinemann , U. 1993 . Nature , 364 : 164 – 168 .
   PubMed Web of Science ®Google Scholar
• Makhatadze , G. I. and Marahiel , M. A. 1994 . Protein Sci. , 3 : 2144 – 2147 .
   PubMedGoogle Scholar
• Schindelin , H. , Jiang , W. , Inouye , M. and Heinemann , U. 1994 . Proc. Natl. Acad. Sci. , 91 : 5119 – 5123 .
   PubMed Web of Science ®Google Scholar
• Petrosian , S. A. and Makhatadze , G. I. 2000 . Protein Sci. , 9 : 387 – 394 .
   PubMed Web of Science ®Google Scholar
• Vijay-Kumar , S. , Bugg , Ch. E. and Cook , W. J. 1987 . J. Mol. Biol. , 194 : 531 – 544 .
   PubMed Web of Science ®Google Scholar
• Wintrode , P. L. , Makhatadze , G. I. and Privalov , P. L. 1994 . Proteins: Struct., Funct, Genet. , 18 : 246 – 253 .
   PubMed Web of Science ®Google Scholar
• Alexander , P. , Fahnestock , S. , Lee , T. , Orban , J. and Bryan , Ph . 1992 . Biochemistry , 31 : 3597 – 3603 .
   PubMedGoogle Scholar
• Strop , P. , Marinescu , A. M. and Mayo , S. L. 2000 . Protein Sci. , 9 : 1391 – 1394 .
   PubMedGoogle Scholar
• Musaccio , A. , Noble , M. , Pauptit , R. , Wierenga , R. and Sarasate , M. 1992 . Nature , 359 : 851 – 855 .
   PubMedGoogle Scholar
• Viguera , A. R. , Martinez , J. C. , Filimonov , V. V. , Mateo , P. L. and Serrano , L. 1994 . Biochemistry , 33 : 2142 – 2150 .
   PubMed Web of Science ®Google Scholar
• Viguera , A. R. , Blanco , F. J. and Serrano , L. 1995 . J. Mol. Biol. , 247 : 670 – 681 .
   PubMedGoogle Scholar
• Filimonov , V. V. , Azuaga , A. I. , Viguera , A. R. , Serrano , L. and Mateo , P. L. 1999 . Biophys. Chem. , 77 : 195 – 208 .
   PubMedGoogle Scholar
• McDonald , I. K. and Thornton , J. M. 1994 . J. Mol. Biol. , 238 : 777 – 793 .
   PubMed Web of Science ®Google Scholar
• Baker , E. N. and Hubbard , R. E. 1984 . Prog. Biophys. Mol. Biol. , 44 : 97 – 197 .
   PubMed Web of Science ®Google Scholar
• Berendsen , H. J. C. , van der Spoel , D. and van Drunen , R. 1995 . Comp. Phys. Comm. , 91 : 43 – 56 .
   Web of Science ®Google Scholar
• Lindahl , E. , Hess , B. and van der Spoel , D. 2001 . J. Mol. Mod. , 7 : 306 – 317 .
   Web of Science ®Google Scholar
• Privalov , P. L. , Griko , Yu. V. , Venyaminov , S. Yu. and Kutyshenko , V. P. 1986 . J. Mol. Biol. , 190 : 487 – 498 .
   PubMed Web of Science ®Google Scholar
• Fukada , H. and Takahashi , K. 1998 . Proteins: Struct. Funct. Genet. , 33 : 159 – 166 .
   PubMedGoogle Scholar
• Liang , J. and Dill , K. A. 2001 . Biophys. J. , 81 : 751 – 766 .
   PubMed Web of Science ®Google Scholar
• Burley , S. K. and Petsko , G. A. 1988 . Adv. Prot. Chem. , 39 : 125 – 189 .
   PubMedGoogle Scholar
• Hennig , M. , Darimont , B. , Sterner , R. , Kirschner , K. and Jansonius , J. N. 1995 . Structure , 3 : 1295 – 1306 .
   PubMedGoogle Scholar
• Jeffrey , G. A. and Saenger , W. 1991 . Hydrogen Bonding in Biological Structures Berlin : Springer-Verlag . Chapter 25
   Google Scholar
• Creighton , T. 1993 . Proteins: Structures and Molecular Properties Edited by: Freeman , W. H. 162 – 164 . New York
   Google Scholar
• Khechinashvili , N. N. , Janin , J. and Rodier , F. 1995 . Protein Sci. , 4 : 1315 – 1324 .
   PubMedGoogle Scholar