Mobility and temperature resistance of trehalose mycolates as key characteristics of the outer membrane of Mycobacterium tuberculosis

References

• Adams, M. A., Howells, W. S., & Telling, M. T. F. (2001). The IRIS user guide (2nd ed.). Didcot: ISIS Facility.
   Google Scholar
• Affouard, F., Bordat, P., Descamps, M., Magazù, S., Migliardo, F., Ramirez-Cuesta, A. J., & Telling, M. T. F. (2005). A combined neutron scattering and simulation study on bioprotectant systems. Chemical Physics, 317, 258–266.10.1016/j.chemphys.2005.05.033
   Web of Science ®Google Scholar
• Bànky, D., Ivàn, G., & Grolmusz, V. (2013). Equal opportunity for low-degree network nodes: A PageRank based method for protein target identification in metabolic graphs. PLoS ONE, 8, e54204-1–e54204-7.
   Google Scholar
• Barry, C. E. (2001). Interpreting cell wall “virulence factors” of Mycobacterium tuberculosis. Trends in Microbiology, 9, 237–241.10.1016/S0966-842X(01)02018-2
   PubMed Web of Science ®Google Scholar
• Barry, C. E., Lee, R. E., Mdluli, K., Sampson, A. E., Schroeder, B. G., Slayden, R. A., & Yuan, Y. (1998). Mycolic acids: Structure, biosynthesis and physiological functions. Progress in Lipid Research, 37, 143–179.10.1016/S0163-7827(98)00008-3
   PubMed Web of Science ®Google Scholar
• Bayan, N., Houssin, C., Chami, M., & Leblon, G. (2003). Mycomembrane and S-layer: Two important structures of Corynebacterium glutamicum cell envelope with promising biotechnology applications. Journal of Biotechnology, 104, 55–67.10.1016/S0168-1656(03)00163-9
   PubMed Web of Science ®Google Scholar
• Bee, M. (1988). Quasielastic neutron scattering. Bristol: A. Hilger.
   Google Scholar
• Bou Raad, R., Meniche, X., de Sousa-d’Auria, C., Chami, M., Salmeron, C., Tropis, M., … Bayan, N. (2010). A deficiency in arabinogalactan biosynthesis affects Corynebacterium glutamicum mycolate outer membrane stability. Journal of Bacteriology, 192, 2691–2700.10.1128/JB.00009-10
   PubMed Web of Science ®Google Scholar
• Brennan, P. J., & Nikaido, H. (1995). The envelope of mycobacteria. Annual Review of Biochemistry, 64, 29–63.10.1146/annurev.bi.64.070195.000333
   PubMed Web of Science ®Google Scholar
• Chatterjee, D. (1997). The mycobacterial cell wall: Structure, biosynthesis and sites of drug action. Current Opinion in Chemical Biology, 1, 579–588.10.1016/S1367-5931(97)80055-5
   PubMed Web of Science ®Google Scholar
• Crowe, J. H., Clegg, J. S., & Crowe, L. M. (1998). Anhydrobiosis: The water replacement hypothesis. In D. S. Reid (Ed.), The roles of water in foods (pp. 440–455). New York, NY: Chapman & Hall.
   Google Scholar
• Crowe, J. H., & Crowe, L. M. (1984). Preservation of membranes in anhydrobiotic organisms: The role of trehalose. Science, 223, 701–703.10.1126/science.223.4637.701
   PubMed Web of Science ®Google Scholar
• Crowe, L. M., Spargo, B. J., Ioneda, T., Beaman, B. L., & Crowe, J. H. (1994). Interaction of cord factor (α,α′-trehalose-6,6′-dimycolate) with phospholipids. Biochimica et Biophysica Acta (BBA) – Biomembranes, 1194, 53–60.10.1016/0005-2736(94)90202-X
   PubMed Web of Science ®Google Scholar
• Daffé, M., & Draper, P. (1998). The envelope layers of mycobacteria with reference to their pathogenicity. Advances in Microbial Physiology, 39, 131–203.
   PubMed Web of Science ®Google Scholar
• Dover, L. G., Cerdeno-Tarraga, A. M., Pallen, M. J., Parkhill, J., & Besra, G. S. (2004). Comparative cell wall core biosynthesis in the mycolated pathogens, Mycobacterium tuberculosis and Corynebacterium diphtheria. FEMS Microbiology Reviews, 28, 225–250.10.1016/j.femsre.2003.10.001
   PubMed Web of Science ®Google Scholar
• Draper, P. (1998). The outer parts of the mycobacterial envelope as permeability barriers. Frontiers in Bioscience, 3, d1253–d1261.
   Google Scholar
• Dubnau, E., Chan, J., Raynaud, C., Mohan, V. P., Laneelle, M.-A., Yu, K., … Daffé, M. (2000). Oxygenated mycolic acids are necessary for virulence of M. tuberculosis in mice. Molecular Microbiology, 36, 630–637.
   PubMed Web of Science ®Google Scholar
• Fisher, M. A., Plikaytis, B. B., & Shinnick, T. M. (2002). Microarray analysis of the Mycobacterium tuberculosis transcriptional response to the acidic conditions found in phagosomes. Journal of Bacteriology, 184, 4025–4032.10.1128/JB.184.14.4025-4032.2002
   PubMed Web of Science ®Google Scholar
• Fitter, J., Verclas, S. A. W., Lechner, R. E., Seelert, H., & Dencher, N. A. (1998). Function and picosecond dynamics of bacteriorhodopsin in purple membrane at different lipidation and hydration. FEBS Letters, 433, 321–325.10.1016/S0014-5793(98)00938-7
   PubMed Web of Science ®Google Scholar
• Garcia-Manyes, S., Oncins, G., & Sanz, F. (2005). Effect of temperature on the nanomechanics of lipid bilayers studied by force spectroscopy. Biophysical Journal, 89, 4261–4274.10.1529/biophysj.105.065581
   PubMed Web of Science ®Google Scholar
• Gebhardt, H., Meniche, X., Tropis, M., Kramer, R., Daffe, M., & Morbach, S. (2007). The key role of the mycolic acid content in the functionality of the cell wall permeability barrier in Corynebacterineae. Microbiology, 153, 1424–1434.10.1099/mic.0.2006/003541-0
   PubMed Web of Science ®Google Scholar
• George, K. M., Yuan, Y., Sherman, D. R., & Barry, C. E., III (1995). The biosynthesis of cyclopropanated mycolic acids in Mycobacterium tuberculosis. Identification and functional analysis of cmas-2. Journal of Biological Chemistry, 270, 27292–27298.
   PubMed Web of Science ®Google Scholar
• Gliss, C., Randel, O., Casalta, H., Sackmann, E., Zorn, E., & Bayerl, T. (1999). Anisotropic motion of cholesterol in oriented DPPC bilayers studied by quasielastic neutron scattering: The liquid-ordered phase. Biophysical Journal, 77, 331–340.10.1016/S0006-3495(99)76893-1
   PubMed Web of Science ®Google Scholar
• Hoffmann, C., Leis, A., Niederweis, M., Plitzko, J. M., & Engelhardt, H. (2008). Disclosure of the mycobacterial outer membrane: Cryo-electron tomography and vitreous sections reveal the lipid bilayer structure. Proceedings of the National Academy of Sciences, 105, 3963–3967.10.1073/pnas.0709530105
   PubMed Web of Science ®Google Scholar
• Hong, X., & Hopfinger, A. J. (2004). Construction, molecular modeling, and simulation of Mycobacterium tuberculosis cell walls. Biomacromolecules, 5, 1052–1065.10.1021/bm034514c
   PubMed Web of Science ®Google Scholar
• Horváti, K., Bacsa, B., Szabó, N., Dávid, S., Mező, G., Grolmusz, V., … Bősze, S. (2012). Enhanced cellular uptake of a new, in silico identified antitubercular candidate by peptide conjugation. Bioconjugate Chemistry, 23, 900–907.10.1021/bc200221t
   PubMed Web of Science ®Google Scholar
• Konig, S., Bayerl, T. M., Coddens, G., Richter, D., & Sackmann, E. (1995). Hydration dependence of chain dynamics and local diffusion in L-alpha-dipalmitoylphosphtidylcholine multilayers studied by incoherent quasi-elastic neutron scattering. Biophysical Journal, 68, 1871–1880.10.1016/S0006-3495(95)80364-4
   PubMedGoogle Scholar
• Liu, J., Barry, C. E., III, Besra, G. S., & Nikaido, H. (1996). Mycolic acid structure determines the fluidity of the mycobacterial cell wall. Journal of Biological Chemistry, 271, 29545–29551.
   PubMed Web of Science ®Google Scholar
• Magazù, S., Migliardo, F., Mondelli, C., & Vadalà, M. (2005). Correlation between bioprotective effectiveness and dynamic properties of trehalose–water, maltose–water and sucrose–water mixtures. Carbohydrate Research, 340, 2796–2801.10.1016/j.carres.2005.09.026
   PubMed Web of Science ®Google Scholar
• Magazù, S., Migliardo, F., & Ramirez-Cuesta, A. J. (2005). Inelastic neutron scattering study on bioprotectant systems. Journal of The Royal Society Interface, 2, 527–532.10.1098/rsif.2005.0059
   PubMed Web of Science ®Google Scholar
• Magazù, S., Migliardo, F., & Telling, M. T. F. (2006). α,α-Trehalose−water solutions. VIII. Study of the Diffusive dynamics of water by high-resolution quasi elastic neutron scattering. The Journal of Physical Chemistry B, 110, 1020–1025.10.1021/jp0536450
   PubMed Web of Science ®Google Scholar
• Magazù, S., Migliardo, F., & Telling, M. T. F. (2007). Study of the dynamical properties of water in disaccharide solutions. European Biophysics Journal, 36, 163–171.10.1007/s00249-006-0108-0
   PubMed Web of Science ®Google Scholar
• Magazù, S., Migliardo, F., & Telling, M. T. F. (2008). Structural and dynamical properties of water in sugar mixtures. Food Chemistry, 106, 1460–1466.10.1016/j.foodchem.2007.05.097
   Web of Science ®Google Scholar
• Marchand, C. H., Salmeron, C., Bou Raad, R., Meniche, X., Chami, M., Masi, M., … Bayan, N. (2012). Biochemical disclosure of the mycolate outer membrane of Corynebacterium glutamicum. Journal of Bacteriology, 194, 587–597.10.1128/JB.06138-11
   PubMed Web of Science ®Google Scholar
• Mészáros, B., Tóth, J., Vértessy, B. G., Dosztányi, Z., & Simon, I. (2011). Proteins with complex architecture as potential targets for drug design: A case study of Mycobacterium tuberculosis. PLOS Computational Biology, 7, e1002118-1–e1002118-14.
   Google Scholar
• Migliardo, F., Salmeron, C., & Bayan, N. (2013). A neutron scattering study on the stability of trehalose mycolates under thermal stress. Chemical Physics, 424, 70–74.
   Web of Science ®Google Scholar
• Minnikin, D. E. (1982). Lipids: Complex lipids, their chemistry, biosynthesis and roles. In C. Ratledge & J. Stanford (Eds.), The biology of the mycobacteria: Physiology, identification and classification (pp. 95–184). Parow: Academic Press.
   Google Scholar
• Nikaido, H., Kim, S.-H., & Rosenberg, E. Y. (1993). Physical organization of lipids in the cell wall of Mycobacterium chelonae. Molecular Microbiology, 8, 1025–1030.10.1111/mmi.1993.8.issue-6
   PubMedGoogle Scholar
• Oliver, A. E., Crowe, L. M., & Crowe, J. H. (1998). Methods for dehydration-tolerance: Depression of the phase transition temperature in dry membranes and carbohydrate vitrification. Seed Science Research, 8, 211–221.
   Web of Science ®Google Scholar
• Pecsi, I., Hirmondo, R., Brown, A. C., Lopata, A., Parish, T., Vertessy, B. G., & Tóth, J. (2012). The dUTPase enzyme is essential in Mycobacterium smegmatis. PLoS ONE, 7, e37461-1–e37461-11.
   Google Scholar
• Puech, V., Chami, M., Lemassu, A., Laneelle, M. A., Schiffler, B., Gounon, P., … Daffè, M. (2001). Structure of the cell envelope of corynebacteria: Importance of the non-covalently bound lipids in the formation of the cell wall permeability barrier and fracture plane. Microbiology, 147, 1365–1382.
   PubMed Web of Science ®Google Scholar
• Rastogi, N. (1991). Recent observations concerning structure and function relationships in the mycobacterial cell envelope: Elaboration of a model in terms of mycobacterial pathogenicity, virulence and drug-resistance. Research in Microbiology, 142, 464–476.10.1016/0923-2508(91)90121-P
   PubMed Web of Science ®Google Scholar
• Rohde, K. H., Abramovitch, R. B., & Russell, D. G. (2007). Mycobacterium tuberculosis invasion of macrophages: Linking bacterial gene expression to environmental cues. Cell Host & Microbe, 2, 352–364.10.1016/j.chom.2007.09.006
   PubMed Web of Science ®Google Scholar
• Scheich, C., Szabadka, Z., Vértessy, B., Pütter, V., Grolmusz, V., & Schade, M. (2011). Discovery of novel MDR-Mycobacterium tuberculosis inhibitor by new FRIGATE computational screen. PLoS ONE, 6, e28428-1–e28428-9.
   Google Scholar
• Swenson, J., Kargl, F., Berntsen, P., & Svanberg, C. (2008). Solvent and lipid dynamics of hydrated lipid bilayers by incoherent quasielastic neutron scattering. Journal of Chemical Physics, 29, 045101-1–045101-7.
   Google Scholar
• Telling, M. T. F., & Andersen, K. H. (2005a). The OSIRIS user guide (2nd ed.). Didcot: ISIS Facility.
   Google Scholar
• Telling, M. T. F., & Andersen, K. H. (2005b). Spectroscopic characteristics of the OSIRIS near-backscattering crystal analyser spectrometer on the ISIS pulsed neutron source. Physical Chemistry Chemical Physics, 7, 1255–1261.10.1039/b413934h
   PubMed Web of Science ®Google Scholar
• Telling, M. T. F., & Howells, W. S. (2003). MODES – IRIS data analysis (1st ed.). Didcot: ISIS Facility.
   Google Scholar
• Tews, I., Findeisen, F., Sinning, I., Schultz, A., Schultz, J. E., & Linder, J. U. (2005). The structure of a pH-sensing mycobacterial adenylyl cyclase holoenzyme. Science, 308, 1020–1023.10.1126/science.1107642
   PubMed Web of Science ®Google Scholar
• Tran, S. L., Rao, M., Simmers, C., Gebhard, S., Olsson, K., & Cook, G. M. (2005). Mutants of Mycobacterium smegmatis unable to grow at acidic pH in the presence of the protonophore carbonyl cyanide m-Chlorophenylhydrazone. Microbiology, 151, 665–672.10.1099/mic.0.27624-0
   PubMed Web of Science ®Google Scholar
• Trias, J., & Benz, R. (1994). Permeability of the cell wall of Mycobacterium smegmatis. Molecular Microbiology, 14, 283–290.10.1111/mmi.1994.14.issue-2
   PubMedGoogle Scholar
• Vandal, O. H., Nathan, C. F., & Ehrt, S. (2009). Acid Resistance in Mycobacterium tuberculosis. Journal of Bacteriology, 191, 4714–4721.10.1128/JB.00305-09
   PubMed Web of Science ®Google Scholar
• Vandal, O. H., Roberts, J. A., Odaira, T., Schnappinger, D., Nathan, C. F., & Ehrt, S. (2009). Acid-susceptible mutants of Mycobacterium tuberculosis share hypersusceptibility to cell wall and oxidative stress and to the host environment. Journal of Bacteriology, 191, 625–631.10.1128/JB.00932-08
   PubMed Web of Science ®Google Scholar
• Varga, B., Barabás, O., Takács, E., Nagy, N., Nagy, P., & Vértessy, B. G. (2008). Active site of mycobacterial dUTPase: Structural characteristics and a built-in sensor. Biochemical and Biophysical Research Communications, 373, 8–13.10.1016/j.bbrc.2008.05.130
   PubMed Web of Science ®Google Scholar
• Vergne, I., Chua, J., Singh, S. B., & Deretic, V. (2004). Cell biology of Mycobacterium tuberculosis phagosome. Annual Review of Cell and Developmental Biology, 20, 367–394.10.1146/annurev.cellbio.20.010403.114015
   PubMed Web of Science ®Google Scholar
• Vértessy, B. G., & Tóth, J. (2009). Keeping uracil out of DNA: Physiological role, structure and catalytic mechanism of dUTPases. Accounts of Chemical Research, 42, 97–106.10.1021/ar800114w
   PubMed Web of Science ®Google Scholar
• Volino, F. (1978). Microscopic structure and dynamics of liquids, NATO ASI series: Ser B, 71. New York, NY: Wiley.
   Google Scholar
• Volino, F., & Dianoux, A. J. (1978). Organic liquids; structures dynamics and chemical properties, NATO ASI series: Ser B, 33. New York, NY: John.
   Google Scholar
• WHO Global Tuberculosis Control Report. (2011). WHO library cataloguing-in-publication data. ISBN-9789241564380.
   Google Scholar
• Zuber, B., Chami, M., Houssin, C., Dubochet, J., Griffiths, G., & Daffe, M. (2008). Direct visualization of the outer membrane of Mycobacteria and Corynebacteria in their native state. Journal of Bacteriology, 190, 5672–5680.10.1128/JB.01919-07
   PubMed Web of Science ®Google Scholar