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Journal of Biomolecular Structure and Dynamics Volume 37, 2019 - Issue 7
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Letter to the Editor

Oxidative DNA damage is associated more with genome accessibility than spatial positioning in the nucleus

Gang XueHubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, Wuhan430070, P. R. China.
,
Xin-Yi ChuHubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, Wuhan430070, P. R. China.
&
Hong-Yu ZhangHubei Key Laboratory of Agricultural Bioinformatics, College of Informatics, Huazhong Agricultural University, Wuhan430070, P. R. China.Correspondence[email protected]
Pages 1857-1862 | Received 22 Mar 2018, Accepted 06 Apr 2018, Published online: 07 May 2018

References

  • Amendola, M. , & van Steensel, B. (2015). Nuclear lamins are not required for lamina-associated domain organization in mouse embryonic stem cells. EMBO reports , 16 (5), 610–617. doi:10.15252/embr.201439789
  • Amouroux, R. , Campalans, A. , Epe, B. , & Radicella, J. P. (2010). Oxidative stress triggers the preferential assembly of base excision repair complexes on open chromatin regions. Nucleic Acids Research , 38 (9), 2878–2890. doi:10.1093/nar/gkp1247
  • Ding, Y. , Fleming, A. M. , & Burrows, C. J. (2017). Sequencing the mouse genome for the oxidatively modified base 8-oxo-7,8-dihydroguanine by OG-Seq. Journal of the American Chemical Society , 139 (7), 2569–2572. doi:10.1021/jacs.6b12604
  • Fidel, R. , Ryan, D. P. , Björn, G. , Vivek, B. , Fabian, K. , Richter, A. S. , … Thomas, M. (2016). deepTools2: A next generation web server for deep-sequencing data analysis. Nucleic Acids Research , 44 (W1), W160–W165. doi:10.1093/nar/gkw257
  • Hosseinzadeh, R. , Khorsandi, K. & Hosseinzadeh, G. (2017). Graphene oxide-methylene blue nanocomposite in photodynamic therapy of human breast cancer. Journal of Biomolecular Structure and Dynamics . Advance online publication. doi:10.1080/07391102.2017.1345698
  • Hublitz, P. , Albert, M. , & Peters, A. H. (2009). Mechanisms of transcriptional repression by histone lysine methylation. The International Journal of Developmental Biology , 53 (2), 335–354. doi:10.1387/ijdb.082717ph
  • Li, S. , Shao, N. , Liu, X. , & Nestler, E. (2014). ngs.plot: Quick mining and visualization of next-generation sequencing data by integrating genomic databases. Bmc Genomics , 15 (1), 284–284. doi:10.1186/1471-2164-15-284
  • Michaelson, J. J. , Shi, Y. , Gujral, M. , Zheng, H. , Malhotra, D. , Jin, X. , … Bhandari, A. (2012). Whole-genome sequencing in autism identifies hot spots for de novo germline mutation. Cell , 151 (7), 1431–1442. doi:10.1016/j.cell.2012.11.019
  • Mirzaei, S. , Hadadi, Z. , Attar, F. , Mousavi, S. E. , Zargar, S. S. , Tajik, A. , … Falahati, M. (2017). ROS-mediated heme degradation and cytotoxicity induced by iron nanoparticles: Hemoglobin and lymphocyte cells as targets. Journal of Biomolecular Structure and Dynamics . Advance online publication. doi:10.1080/07391102.2017.1411832
  • Peric-Hupkes, D. , Meuleman, W. , Pagie, L. , Bruggeman, S. W. M. , Solovei, I. , Brugman, W. , … van Lohuizen, M. V. (2010). Molecular maps of the reorganization of genome-nuclear lamina interactions during differentiation. Molecular Cell , 38 (4), 603–613. doi:10.1016/j.molcel.2010.03.016
  • Ray, P. D. , Huang, B. W. , & Tsuji, Y. (2012). Reactive oxygen species (ROS) homeostasis and redox regulation in cellular signaling. Cellular Signalling , 24 (5), 981–990. doi:10.1016/j.cellsig.2012.01.008
  • Van, L. B. , Markkanen, E. , & Hübscher, U. (2010). Oxygen as a friend and enemy: How to combat the mutational potential of 8-oxo-guanine. Dna Repair , 9 (6), 604–616. doi:10.1016/j.dnarep.2010.03.004
  • Wang, Z. Y. , Xiong, M. , Fu, L. Y. , & Zhang, H. Y. (2013). Oxidative DNA damage is important to the evolution of antibiotic resistance: Evidence of mutation bias and its medicinal implications. Journal of Biomolecular Structure & Dynamics , 31 (7), 729–733. doi:10.1080/07391102.2012.709457
  • Yoshihara, M. , Jiang, Li , Akatsuka, S. , Suyama, M. , & Toyokuni, S. (2014). Genome-wide Profiling of 8-Oxoguanine Reveals Its Association with Spatial Positioning in Nucleus. DNA Research: An International Journal for Rapid Publication of Reports on Genes and Genomes , 21 (6), 603–612. doi:10.1093/dnares/dsu023

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