556
Views
8
CrossRef citations to date
0
Altmetric
Research Articles

A-CaMP: a tool for anti-cancer and antimicrobial peptide generation

, ORCID Icon, , , ORCID Icon &
Pages 285-293 | Received 03 Sep 2019, Accepted 19 Dec 2019, Published online: 06 Jan 2020

References

  • Barras, D., & Widmann, C. (2011). Promises of apoptosis-inducing peptides in cancer therapeutics. Current pharmaceutical Biotechnology, 12(8), 1153–1165. doi:10.2174/138920111796117337
  • Biemar, F., & Foti, M. (2013). Global progress against cancer-challenges and opportunities. Cancer biology & Medicine, 10(4), 183–186. doi:10.7497/j.issn.2095-3941.2013.04.001
  • Boohaker, R. J., Lee, M. W., Vishnubhotla, P., Perez, J. M., & Khaled, A. R. (2012). The use of therapeutic peptides to target and to kill cancer cells. Current Medicinal Chemistry, 19, 3794–3804. doi:10.2174/092986712801661004
  • Collisson, E., Muzny, D. M., Bainbridge, M. N., Chang, K., Dinh, H. H., Drummond, J. A., … Newsham, I. F. (2012). Comprehensive molecular characterization of human colon and rectal cancer. Nature, 487, 330–337.
  • Edwards, N. J., Oberti, M., Thangudu, R. R., Cai, S., McGarvey, P. B., Jacob, S., … Ketchum, K. A. (2015). The CPTAC data portal: A resource for cancer proteomics research. Journal of Proteome Research, 14 (6), 2707–2713. doi:10.1021/pr501254j
  • Fitzmaurice, C., Allen, C., Barber, R. M., Barregard, L., Bhutta, Z. A., Brenner, H., … Fleming, T. (2017). Global, regional, and national cancer incidence, mortality, years of life lost, years lived with disability, and disability-adjusted life-years for 32 cancer groups, 1990 to 2015: A systematic analysis for the global burden of disease study. JAMA Oncology, 3(4), 524–548. doi:10.1001/jamaoncol.2016.5688
  • Goldman, M., Craft, B., Swatloski, T., Cline, M., Morozova, O., Diekhans, M., … Zhu, J. (2015). The UCSC Cancer Genomics Browser: Update 2015. Nucleic Acids Research, 43 (D1), D812–7. doi:10.1093/nar/gku1073
  • Hancock, R. E., Haney, E. F., & Gill, E. E. (2016). The immunology of host defence peptides: Beyond antimicrobial activity. Nature Reviews Immunology, 16(5), 321–334. Epub 2016 Apr 18. doi:10.1038/nri.2016.29
  • Holohan, C., Van Schaeybroeck, S., Longley, D. B., & Johnston, P. G. (2013). Cancer drug resistance: An evolving paradigm. Nature Reviews Cancer, 13(10), 714–726. doi:10.1038/nrc3599
  • Hoskin, D. W., & Ramamoorthy, A. (2008). Studies on anticancer activities of antimicrobial peptides. Biochimica et Biophysica Acta (Bba)—Biomembranes , 1778 (2), 357–375. doi:10.1016/j.bbamem.2007.11.008
  • Kaushik, A. C. and Sahi, S. (2018). Biological complexity: ant colony meta-heuristic optimization algorithm for protein folding. Neural Computing and Applications, 1–7.
  • Kaushik, A. C., Mehmood, A., Upadhyay, A. K., Paul, S., Srivastava, S., Mali, P., Xiong, Y., Dai, X., Wei, D. Q., Sahi. S. (2019). CytoMegaloVirus Infection Database: a public omics database for systematic and comparable information of CMV. INSC nterdisciplinary Sciences: Computational Life Scie 1–9. https://doi.org/10.1007/s12539-019-00350-x.
  • Kaushik, A. C., & Sahi, S. (2018). HOGPred: Artificial neural network-based model for orphan GPCRs. Neural Computing and Applications, 29 (4), 985–992. doi:10.1007/s00521-016-2502-6
  • Li, Z. J., & Cho, C. H. (2012). Peptides as targeting probes against tumor vasculature for diagnosis and drug delivery. Journal of Translational Medicine , 10, S1. doi:10.1186/1479-5876-10-S1-S1
  • Mader, J. S., & Hoskin, D. W. (2006). Cationic antimicrobial peptides as novel cytotoxic agents for cancer treatment. Expert Opinion on Investigational Drugs, 15 (8), 933–946. doi:10.1517/13543784.15.8.933
  • Mahassni, S. H., & Al-Reemi, R. M. (2013). Apoptosis and necrosis of human breast cancer cells by an aqueous extract of garden cress (Lepidium sativum) seeds. Saudi Journal of Biological Sciences, 20(2), 131–139. doi:10.1016/j.sjbs.2012.12.002
  • Packer, B. R., Yeager, M., Burdett, L., Welch, R., Beerman, M., Qi, L., … Eckert, A. (2006). SNP500Cancer: A public resource for sequence validation, assay development, and frequency analysis for genetic variation in candidate genes. Nucleic Acids Research, 34(90001), D617–D621. doi:10.1093/nar/gkj151
  • Schweizer, F. (2009). Cationic amphiphilic peptides with cancer-selective toxicity. European Journal of Pharmacology, 625 (1-3), 190–194. doi:10.1016/j.ejphar.2009.08.043
  • Selvaraj, G., Kaliamurthi, S., Kaushik, A. C., Khan, A., Wei, Y.-K., Cho, W. C., … Wei, D.-Q. (2018). Identification of target gene and prognostic evaluation for lung adenocarcinoma using gene expression meta-analysis, network analysis and neural network algorithms. Journal of Biomedical Informatics, 86, 120–134. doi:10.1016/j.jbi.2018.09.004
  • Shapira, S., Fokra, A., Arber, N., & Kraus, S. (2014). Peptides for diagnosis and treatment of colorectal cancer. Current Medicinal Chemistry, 21 (21), 2410–2416. doi:10.2174/0929867321666140205134616
  • Thundimadathil, J. (2012). Cancer treatment using peptides: Current therapies and future prospects. Journal of Amino Acids, 2012, 1–13. doi:10.1155/2012/967347
  • Vogelstein, B., Papadopoulos, N., Velculescu, V. E., Zhou, S., Diaz, L. A., … Kinzler, K. W. (2013). Cancer genome landscapes. Science (New York, N.Y.), 339(6127), 1546–1558. doi:10.1126/science.1235122
  • Watad, A., Rosenberg, V., Tiosano, S., Cohen Tervaert, J. W., Yavne, Y., Shoenfeld, Y., … Amital, H. (2018). Silicone breast implants and the risk of autoimmune/rheumatic disorders: A real-world analysis. International Journal of Epidemiology, 47 (6), 1846–1854. doi:10.1093/ije/dyy217
  • Wilks, C., Cline, M. S., Weiler, E., Diehkans, M., Craft, B., Martin, C., … Maltbie, D. (2014). The Cancer Genomics Hub (CGHub): Overcoming cancer through the power of torrential data. Database, 2014, bau093. doi:10.1093/database/bau093
  • Yang, T. O., Cairns, B. J., Green, J., Reeves, G. K., Floud, S., Bradbury, K. E., … Collaborators, M. W. S. (2019). Adult cancer risk in women who were breastfed as infants: Large UK prospective study. European Journal of Epidemiology, 34, 863–870. doi:10.1007/s10654-019-00528-z

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.