References
- Aathmanathan, V. S., Jothi, N., Prajapati, V. K., & Krishnan, M. (2018). Investigation of immunogenic properties of Hemolin from silkworm, Bombyx mori as carrier protein: An immunoinformatic approach. Scientific Reports, 8(1), 6957. https://doi.org/https://doi.org/10.1038/s41598-018-25374-z
- Andrusier, N., Nussinov, R., & Wolfson, H. J. (2007). FireDock: Fast interaction refinement in molecular docking. Proteins, 69(1), 139–159. https://doi.org/https://doi.org/10.1002/prot.21495
- Bateman, A., Martin, M. J., O’Donovan, C., Magrane, M., Alpi, E., Antunes, R., … Zhang, J. (2017). UniProt: The universal protein knowledgebase. Nucleic Acids Research, 45(1), 158-169. https://doi.org/https://doi.org/10.1093/nar/gkw1099
- Bhardwaj, V. K., & Purohit, R. (2020). Targeting the protein-protein interface pocket of Aurora-A-TPX2 complex: Rational drug design and validation. Journal of Biomolecular Structure and Dynamics, https://doi.org/https://doi.org/10.1080/07391102.2020.1772109
- Bhardwaj, V. K., Singh, R., Sharma, J., Rajendran, V., Purohit, R., & Kumar, S. (2020). Identification of bioactive molecules from tea plant as SARS-CoV-2 main protease inhibitors. Journal of Biomolecular Structure and Dynamics, https://doi.org/https://doi.org/10.1080/07391102.2020.1766572
- Biovia, D. S. (2016). Discovery studio modeling environment, release 2017.
- Cho, K. H., Cheon, H. M., Kokoza, V., & Raikhel, A. S. (2006). Regulatory region of the vitellogenin receptor gene sufficient for high-level, germ line cell-specific ovarian expression in transgenic Aedes aegypti mosquitoes. Insect Biochemistry and Molecular Biology, 36(4), 273–281. https://doi.org/https://doi.org/10.1016/j.ibmb.2006.01.005
- Ciudad, L., Piulachs, M. D., & Bellés, X. (2006). Systemic RNAi of the cockroach vitellogenin receptor results in a phenotype similar to that of the Drosophila yolkless mutant. FEBS Journal, 273(2), 325–335. https://doi.org/https://doi.org/10.1111/j.1742-4658.2005.05066.x
- Cong, L., Yang, W. J., Jiang, X. Z., Niu, J. Z., Shen, G. M., Ran, C., & Wang, J. J. (2015). The essential role of vitellogenin receptor in ovary development and vitellogenin uptake in bactrocera dorsalis (Hendel). International Journal of Molecular Sciences, 16(8), 18368–18383. https://doi.org/https://doi.org/10.3390/ijms160818368
- Dallakyan, S., & Olson, A. J. (2015). Small-molecule library screening by docking with PyRx. Methods in Molecular Biology, 1263, 243–250. https://doi.org/https://doi.org/10.1007/978-1-4939-2269-7_19
- Forli, W., Halliday, S., Belew, R., & Olson, A. (2012). AutoDock Version 4.2.Journal of Medicinal Chemistry, 55(2), 623–638. https://doi.org/https://doi.org/10.1021/jm2005145
- Hagedorn, H. H., Maddison, D. R., & Tu, Z. (1998). The evolution of vitellogenins, cyclorrhaphan yolk proteins and related molecules. Advances in Insect Physiology, 27, 335–384. https://doi.org/https://doi.org/10.1016/S0065-2806(08)60015-6
- Heo, L., Park, H., & Seok, C. (2013). GalaxyRefine: Protein structure refinement driven by side-chain repacking. Nucleic Acids Research, 41(W1), W384–W388. https://doi.org/https://doi.org/10.1093/nar/gkt458
- Källberg, M., Wang, H., Wang, S., Peng, J., Wang, Z., Lu, H., & Xu, J. (2012). Template-based protein structure modeling using the RaptorX web server. Nature Protocols, 7(8), 1511–1522. https://doi.org/https://doi.org/10.1038/nprot.2012.085
- Khatoon, N., Pandey, R. K., Ojha, R., Aathmanathan, V. S., Krishnan, M., & Prajapati, V. K. (2019). Exploratory algorithm to devise multi-epitope subunit vaccine by investigating Leishmania donovani membrane proteins. Journal of Biomolecular Structure & Dynamics, 37(9), 2381–2393. https://doi.org/https://doi.org/10.1080/07391102.2018.1484815
- Kim, S., Thiessen, P. A., Bolton, E. E., Chen, J., Fu, G., Gindulyte, A., Han, L., He, J., He, S., Shoemaker, B. A., Wang, J., Yu, B., Zhang, J., & Bryant, S. H. (2016). PubChem substance and compound databases. Nucleic Acids Research, 44(D1), D1202–D1213. https://doi.org/https://doi.org/10.1093/nar/gkv951
- Krishnan, M., Muthumeenakshi, P., Bharathiraja, C., & Warrier, S. (2008). A comparative study on vitellogenin receptor of a lepidopteran insect (Spodoptera litura) and a decapod crustacean (Scylla serrata) : Phylogenetic implication and co-evolution with vitellogenins. Journal of Endocrinology, 12, 13-23. https://doi.org/https://doi.org/10.18519/JER/2008/V12/77754
- Lee, K. W., Hwang, D. S., Rhee, J. S., Ki, J. S., Park, H. G., Ryu, J. C., … Lee, J. S. (2008). Molecular cloning, phylogenetic analysis and developmental expression of a vitellogenin (Vg) gene from the intertidal copepod Tigriopus japonicus. Comparative Biochemistry and Physiology - B Biochemistry and Molecular Biology, 150(4), 395-402. https://doi.org/https://doi.org/10.1016/j.cbpb.2008.04.009
- Letunic, I., Doerks, T., & Bork, P. (2015). SMART: Recent updates, new developments and status in 2015. Nucleic Acids Research, 43(D1), D257–D260. https://doi.org/https://doi.org/10.1093/nar/gku949
- Lovell, S. C., Davis, I. W., Arendall, W. B., de Bakker, P. I. W., Word, J. M., Prisant, M. G., Richardson, J. S., & Richardson, D. C. (2003). Structure validation by C alpha geometry: F, y and Cb deviation. Proteins: Structure, Function, and Bioinformatics, 50(3), 437–450. https://doi.org/https://doi.org/10.1002/prot.10286
- Lu, Q., Huang, L.-Y., Liu, F.-T., Wang, X.-F., Chen, P., Xu, J., Deng, J.-Y., & Ye, H. (2017). Sex pheromone titre in the glands of Spodoptera litura females: Circadian rhythm and the effects of age and mating. Physiological Entomology, 42(2), 156–162. https://doi.org/https://doi.org/10.1111/phen.12185
- Matsuura, H., & Naito, A. (1997). Studies on the cold-hardiness and overwintering of Spodoptera litura F. (Lepidoptera: Noctuidae) VI. Possible overwintering areas predicted from meteorological data in Japan. Applied Entomology and Zoology, 32(1), 167–177. https://doi.org/https://doi.org/10.1303/aez.32.167
- McGuffin, L. J., Bryson, K., & Jones, D. T. (2000). The PSIPRED protein structure prediction server. Bioinformatics (Oxford, England)), 16(4), 404–405. https://doi.org/https://doi.org/10.1093/bioinformatics/16.4.404
- Pettersen, E. F., Goddard, T. D., Huang, C. C., Couch, G. S., Greenblatt, D. M., Meng, E. C., & Ferrin, T. E. (2004). UCSF Chimera – a visualization system for exploratory research and analysis. Journal of Computational Chemistry, 25(13), 1605–1612. https://doi.org/https://doi.org/10.1002/jcc.20084
- Sappington, T. W., & S. Raikhel, A. (1998). Molecular characteristics of insect vitellogenins and vitellogenin receptors. Insect Biochemistry and Molecular Biology, 28(5-6), 277–300. https://doi.org/https://doi.org/10.1016/S0965-1748(97)00110-0
- Schneidman-Duhovny, D., Inbar, Y., Nussinov, R., & Wolfson, H. J. (2005). PatchDock and SymmDock: Servers for rigid and symmetric docking. Nucleic Acids Research, 33(Web Server), W363–W367. https://doi.org/https://doi.org/10.1093/nar/gki481
- Schüttelkopf, A. W., & Van Aalten, D. M. F. (2004). PRODRG: A tool for high-throughput crystallography of protein-ligand complexes. Acta Crystallographica Section D: Biological Crystallography, 60(8), 1355-63. https://doi.org/https://doi.org/10.1107/S0907444904011679
- Trott, O., & Olson, A. J. (2010). Autodock vina. Journal of Computational Chemistry, 31(2), 455–461. https://doi.org/https://doi.org/10.1002/jcc
- Tufail, M., & Takeda, M. (2008). Molecular characteristics of insect vitellogenins. Journal of Insect Physiology, 54(12), 1447–1458. https://doi.org/https://doi.org/10.1016/j.jinsphys.2008.08.007
- Tufail, M., & Takeda, M. (2009). Insect vitellogenin/lipophorin receptors: Molecular structures, role in oogenesis, and regulatory mechanisms. Journal of Insect Physiology, 55(2), 88–104. https://doi.org/https://doi.org/10.1016/j.jinsphys.2009.01.009
- Van Der Spoel, D., Lindahl, E., Hess, B., Groenhof, G., Mark, A. E., & Berendsen, H. J. C. (2005). GROMACS: Fast, flexible, and free. Journal of Computational Chemistry, 26(16), 1701–1718. https://doi.org/https://doi.org/10.1002/jcc.20291