Brain DNA damage analysis in pesticide exposed wistar albino rats (Rattus norvegicus): a chemometric approach

References

• Ali, M. H., Al-Saad, K., Popelka, A., van Tilborg, G., & Goormaghtigh, E. (2016). Application of Fourier transform infrared (FTIR) spectroscopy and atomic force microscopy in stroke-affected brain tissue. Swift Journal of Medicine and Medical Sciences, 2, 011–024.
   Google Scholar
• Altharawi, A., Rahman, K. M., & Chan, K. L. A. (2019). Towards identifying the mode of action of drugs using live-cell FTIR spectroscopy. The Analyst, 144(8), 2725–2735.
   PubMed Web of Science ®Google Scholar
• Avila, J., Ramos, A. G., & Soriano, E. (2014). Review: Variations in brain DNA. Frontiers in Aging Neuroscience, 6, 323.
   PubMed Web of Science ®Google Scholar
• Balan, I., Beattie, M. C., O’Buckley, T. K., Aurelian, L., & Morrow, A. L. (2019). Endogenous neurosteroid (3α, 5α)3-hydroxypregnan-20-one inhibits Toll-like-4 receptor activation and pro-inflammatory signaling in macrophages and brain. Scientific Reports, 9(1), 1220. https://doi.org/10.1038/s41598-018-37409-6
   PubMedGoogle Scholar
• Beli, P., Lukashchuk, N., Wagner, S. A., Weinert, B. T., Olsen, J. V., Baskcomb, L., Mann, M., Jackson, S. P., & Choudhary, C. (2012). Proteomic investigations reveal a role for RNA processing factor THRAP3 in the DNA damage response. Molecular Cell, 46(2), 212–225. https://doi.org/10.1016/j.molcel.2012.01.026
   PubMed Web of Science ®Google Scholar
• Brkić, D. V., Vitorović, S. L., Gašić, S. M., & Nešković, N. K. (2008). Carbofuran in water: Subchronic toxicity to rats. Environmental Toxicology and Pharmacology, 25, 334–341.
   PubMed Web of Science ®Google Scholar
• Bruner, S. D., Norman, D. P. G., & Verdine, G. L. (2000). Structural basis for recognition and repair of the endogenous mutagen 8-oxoguanine in DNA. Nature, 403(6772), 859–866.
   PubMed Web of Science ®Google Scholar
• Chiriboga, L., Yee, H., & Diem, M. (2000). Infrared spectroscopy of human cells and tissues. Part VII. FT-IR microspectroscopy of DNAase- and RNAse- treated normal, cirrhotic and neoplastic liver tissue. Applied Spectroscopy, 54(4), 480–485. https://doi.org/10.1366/0003702001949889
   Web of Science ®Google Scholar
• Cinar, O., Semiz, O., & Can, A. (2015). Carbofuran alters centrosome and spindle organization, and delays cell division in oocytes and mitotic cells. Toxicological Sciences, 144(2), 298–306. https://doi.org/10.1093/toxsci/kfu317
   PubMed Web of Science ®Google Scholar
• Clemens, G., Hands, J. R., Dorling, K. M., & Baker, M. J. (2014). Vibrational spectroscopic methods for cytology and cellular research. The Analyst, 139(18), 4411–4444. https://doi.org/10.1039/C4AN00636D
   PubMed Web of Science ®Google Scholar
• Draux, F., Jeannesson, P., Gobinet, C., Sule-Suso, J., Pijanka, J., Sandt, C., Dumas, P., Manfait, M., & Sockalingum, G. D. (2009). IR spectroscopy reveals effect of non-cytotoxic doses of anti-tumor drug on cancer cells. Analytical and Bioanalytical Chemistry, 395, 293–301.
   Web of Science ®Google Scholar
• Fishel, M. L., Vasko, M. R., & Kelley, M. R. (2007). DNA repair in neurons: So if they don’t divide what’s to repair? Mutation Research, 614(1–2), 24–36. https://doi.org/10.1016/j.mrfmmm.2006.06.007
   PubMed Web of Science ®Google Scholar
• Fredericks, J. D., Bennett, P., Williams, A., & Rogers, K. D. (2012). FTIR spectroscopy: A new diagnostic tool to aid DNA analysis from heated bone. Forensic Science International. Genetics, 6(3), 375–380. https://doi.org/10.1016/j.fsigen.2011.07.014
   PubMed Web of Science ®Google Scholar
• Gault, N., & Lefaix, J. L. (2003). Infrared microspectroscopic characteristics of radiation-induced apoptosis in human lymphocytes. Radiation Research, 160(2), 238–250. https://doi.org/10.1667/rr3020.1
   PubMed Web of Science ®Google Scholar
• Giorgini, E., Giocchini, G., Sabbatini, S., Conti, C., Vaccari, L., Borini, A., Carnevali, O., & Tosi, G. (2014). Vibrational characterization of female gametes: A comparative study. The Analyst, 139, 5049.
   PubMed Web of Science ®Google Scholar
• Guo, C., Li, X., Wang, R., Yu, J., Ye, M., Mao, L., Zhang, S., & Zheng, S. (2016). Association between oxidative DNA damage and risk of colorectal cancer: Sensitive determinationof urinary 8-hydroxy-2′-deoxyguanosine by UPLC-MS/MS analysis. Scientific Reports, 6, 32581. https://doi.org/10.1038/srep32581
   PubMed Web of Science ®Google Scholar
• Gupta, R. C., Milatovic, S., Dettbarn, W. D., Aschner, M., & Milatovic, D. (2007). Neuronal oxidative injury and dendritic damage induced by carbofuran: Protection by memantine. Toxicology and Applied Pharmacology, 219(2–3), 97–105. https://doi.org/10.1016/j.taap.2006.10.028
   PubMed Web of Science ®Google Scholar
• Gupta, V. K., Pathak, A., Siddiqi, N. J., & Sharma, B. (2016). Carbofuran modulating functions of acetylcholinesterase from rat brain in vitro. Advances in Biology, 2016, 3760967. https://doi.org/10.1155/2016/3760967
   Google Scholar
• Hamad, A. M., Fahmy, H. M., & Elshemey, W. M. (2020). FT-IR spectral features of DNA as markers for the detection of liver preservation using irradiation. Radiation Physics and Chemistry, 166, 108522.
   Web of Science ®Google Scholar
• Hu, X., De Silva, T. M., Chen, J., & Faraci, F. M. (2017). Cerebral vascular disease and neurovascular injury in ischemic stroke. Circulation Research, 120(3), 449–471. https://doi.org/10.1161/CIRCRESAHA.116.308427
   PubMed Web of Science ®Google Scholar
• Huang, M., Parker, M. J., & Stubbe, J. (2014). Choosing the right metal: Case studies of class I ribonucleotide reductases. The Journal of Biological Chemistry, 289(41), 28104–28111. https://doi.org/10.1074/jbc.R114.596684
   PubMed Web of Science ®Google Scholar
• Jackson, S. P., & Bartek, J. (2009). The DNA-damage response in human biology and disease. Nature, 461(7267), 1071–1078. https://doi.org/10.1038/nature08467
   PubMed Web of Science ®Google Scholar
• Jaiswal, S. K., Siddiqi, N. J., & Sharma, B. (2013). Carbofuran imbalances the redox status in rat brain: Amelioraton by vitamin C. Journal of Biochemistry Research, 1, 36–43.
   Google Scholar
• Jaiswal, S. K., Siddiqi, N. J., & Sharma, B. (2014). Carbofuran induced oxidative stress mediated alterations in Na+-K+-ATPase activity in rat brain: Amelioration by vitamin E. Journal of Biochemical and Molecular Toxicology, 28 (7), 321–327.
   Web of Science ®Google Scholar
• Jaiswal, S. K., Sharma, A., Gupta, V. K., Singh, R. K., & Sharma, B. (2016). Curcumin mediated attenuation of carbofuran induced oxidative stress in rat brain. Biochemistry Research International, 2016, 7637931. https://doi.org/10.1155/2016/7637931
   PubMedGoogle Scholar
• Kim, S. J., Kim, J. E., Ko, B. H., & Moon, I. S. (2004). Carbofuran induces apoptosis of rat cortical neurons and down-regulates surface alpha7 subunit of acetylcholine receptors. Molecules and Cells, 17(2), 242–247.
   PubMed Web of Science ®Google Scholar
• Kohler, A., Böcker, U., Shapaval, V., Forsmark, A., Andersson, M., Warringer, J., Martens, H., Omholt, S. W., & Blomberg, A. (2015). High-throughput biochemical fingerprinting of Saccharomyces cerevisiae by Fourier transform infrared spectroscopy. PLoS One, 10(2), e0118052. https://doi.org/10.1371/journal.pone.0118052
   PubMed Web of Science ®Google Scholar
• Krishnakumar, N., Milton Prabu, S., & Sulfikkarali, N. K. (2012). Quercetin protects against cadmium-induced biochemical and structural changes in rat liver revealed by FT-IR spectroscopy. Biomedicine & Preventive Nutrition, 2(3), 179–185. https://doi.org/10.1016/j.bionut.2012.03.010
   Google Scholar
• LeBlanc, S. J., Gauer, J. W., Hao, P., Case, B. C., Hingorani, M. M., Weninger, K. R., & Erie, D. A. (2018). Coordinated protein and DNA conformational changes govern mismatch repair initiation by MutS. Nucleic Acids Research, 46(20), 10782–10795. https://doi.org/10.1093/nar/gky865
   PubMed Web of Science ®Google Scholar
• Lever, J., Krzywinski, M., & Altman, N. (2017). Points of significance: Principal component analysis. Nature Methods, 14(7), 641.
   Web of Science ®Google Scholar
• Lipiec, E., Bambery, K. R., Lekki, J., Tobin, M. J., Vogel, C., Whelan, D. R., Wood, B. R., & Kwiatek, W. M. (2015). SR-FTIR coupled with principal component analysis shows evidence for the cellular bystander effect. Radiation Research, 184(1), 73–82. https://doi.org/10.1667/RR13798.1
   PubMed Web of Science ®Google Scholar
• Lipiec, E., Bambery, K. R., Heraud, P., Kwiatek, W. M., McNaughton, D., Tobin, M. J., Vogel, C., & Wood, B. R. (2014). Monitoring uvr induced damage in single cells and isolated nuclei using SR-FTIR microspectroscopy and 3D confocal Raman imaging. The Analyst, 139(17), 4200–4209. https://doi.org/10.1039/c4an00838c
   PubMed Web of Science ®Google Scholar
• Maiti, A., Noon, M. S., MacKerell, A. D., Pozharski, E., & Drohat, A. C. (2012). Lesion processing by a repair enzyme is severely curtailed by residues needed to prevent aberrant activity on undamaged DNA. Proceedings of the National Academy of Sciences of the United States of America, 109(21), 8091–8096. https://doi.org/10.1073/pnas.1201010109
   PubMed Web of Science ®Google Scholar
• Meeker, J. D., Singh, N. P., Ryan, L., Duty, S. M., Barr, D. B., Herrick, R. F., Bennett, D. H., & Hauser, R. (2004). Urinary levels of insecticide metabolites and DNA damage in human sperm. Human Reproduction (Oxford, England), 19(11), 2573–2580. https://doi.org/10.1093/humrep/deh444
   PubMed Web of Science ®Google Scholar
• Moser, V. C., Katherine, M., Phillips, P. M., & Lowit, A. B. (2010). Time-course, dose-response, and age comparative sensitivity of N-methyl carbamates in rats. Toxicological Sciences, 114(1), 113–123. https://doi.org/10.1093/toxsci/kfp286
   PubMed Web of Science ®Google Scholar
• Neidhart, M. (2016). DNA methylation and complex human diseases (1st ed.). Academic Press.
   Google Scholar
• Nouspikel, T., & Hanawalt, P. C. (2003). When parsimony backfires: Neglecting DNA repair may doom neurons in Alzheimer’s disease. BioEssays: News and Reviews in Molecular, Cellular and Developmental Biology, 25(2), 168–173. https://doi.org/10.1002/bies.10227
   PubMed Web of Science ®Google Scholar
• Otieno, P. O., Lalah, J. O., Virani, M., Jondiko, I. O., & Schramm, K. W. (2010). Soil and water contamination with carbofuran residues in agricultural farmlands in Kenya following the application of the technical formulation Furadan. Journal of Environmental Science and Health, Part B, 45(2), 137–144. https://doi.org/10.1080/03601230903472058
   PubMed Web of Science ®Google Scholar
• Ozek, N. S., Burak Bal, I., Sara, Y., Onur, R., & Severcan, F. (2014). Structural and functional characterization of simvastatin-induced myotoxicity in different skeletal muscles. Biochimica et Biophysica Acta, 1840(1), 406–415. https://doi.org/10.1016/j.bbagen.2013.09.010
   PubMed Web of Science ®Google Scholar
• Ozek, N. S., Sara, Y., Onur, R., & Severcan, F. (2010). Low dose simvastatin induces compositional, structural and dynamic changes in rat skeletal extensor digitorum longus muscle tissue. Bioscience Reports, 30, 41–50.
   Web of Science ®Google Scholar
• Park, A., Baek, S.-J., Shen, A., & Hu, J. (2013). Detection of Alzheimer’s disease by Raman spectra of rat’s platelets with a simple feature selection. Short communication. Chemometrics and Intelligent Laboratory Systems, 121, 52–56. https://doi.org/10.1016/j.chemolab.2012.11.011
   Web of Science ®Google Scholar
• Paston, S. V., Polyanichko, A. M., Shulenina, O. V., & Osinnikova, D. N. (2020). A study of the DNA structure in films using FTIR spectroscopy. Molecular Biophysics, 65(6), 900–906.
   Google Scholar
• Rai, D. K., Rai, P. K., Watal, G., & Sharma, B. (2010). The Cynodondactylon extract help improve anticholinesterase effects and oxidative stress caused by carbofuran in rat brain. Toxicologic Pathology, 38 (1), E1–E6.
   Google Scholar
• Rai, D. K., Sharma, R. K., Rai, P. K., Watal, G., & Sharma, B. (2011). Role of aqueous extract of Cynodondactylon in prevention of carbofuran induced oxidative stress and acetylcholinesterase inhibition in rat brain. Cellular and Molecular Biology, 57, 135–142.
   PubMed Web of Science ®Google Scholar
• Rai, D. K., & Sharma, B. (2007). Carbofuran-induced oxidative stress in mammalian brain. Molecular Biotechnology, 37(1), 66–71. https://doi.org/10.1007/s12033-007-0046-9
   PubMed Web of Science ®Google Scholar
• Sailer, E. R., Hoernlein, R. F., Ammon, H. P., & Safayhi, H. (1996). Structure-activity relationships of the nonredox-type non-competitive leukotriene biosynthesis inhibitor acetyl-11-keto-β-boswellic acid. Phytomedicine: International Journal of Phytotherapy and Phytopharmacology, 3(1), 73–74. https://doi.org/10.1016/S0944-7113(96)80014-6
   PubMed Web of Science ®Google Scholar
• Saquib, Q., Siddiqui, M. A., Ansari, S. M., Alwathnani, H. A., & Al-Khedhairy, A. A. (2021). Carbofuran cytotoxicity, DNA damage, oxidative stress, and cell death in human umbilical vein endothelial cells: Evidence of vascular toxicity. Journal of Applied Toxicology: JAT, 41(5), 847–860. https://doi.org/10.1002/jat.4150
   PubMed Web of Science ®Google Scholar
• Savitzky, A., & Golay, M. J. E. (1964). Smoothing and differentiation of data by simplified least squares procedures. Analytical Chemistry, 36(8), 1627–1639. https://doi.org/10.1021/ac60214a047
   Web of Science ®Google Scholar
• Saxena, P. N., Gupta, S. K., & Murthy, R. C. (2010). Carbofuran induced cytogenetic effects in root meristem cells of Allium cepa and Allium sativum: A spectroscopic approach for chromosome damage. Pesticide Biochemistry and Physiology, 96(2), 93–100. https://doi.org/10.1016/j.pestbp.2009.09.006
   Web of Science ®Google Scholar
• Serec, K., Šegedin, N., Krajačić, M., & Dolanski Babić, S. (2021). Conformational transitions of double-stranded DNA in thin films. Applied Sciences, 11(5), 2360. https://doi.org/10.3390/app11052360
   Google Scholar
• Shiloh, Y., Shema, E., Moyal, L., & Oren, M. (2011). RNF20-RNF40: A ubiquitin-driven link between gene expression and the DNA damage response. FEBS Letters, 585(18), 2795–2802. https://doi.org/10.1016/j.febslet.2011.07.034
   PubMed Web of Science ®Google Scholar
• Sharma, R. K., Rai, D. K., & Sharma, B. (2012a). In-vitro carbofuran induced micronucleus formation in human blood lymphocytes. Cellular and Molecular Biology, 58 (1), 128–133.
   PubMed Web of Science ®Google Scholar
• Sharma, R. K., Rai, D. K., & Sharma, B. (2012b). In-vitro carbofuran induced genotoxicity in human lymphocytes and its mitigation by vitamins C and E. Disease Markers, 32(3), 153–163. 10.1155/2012/194502
   PubMed Web of Science ®Google Scholar
• Sofińska, K., Wilkosz, N., Szymoński, M., & Lipiec, E. (2020). Review: Molecular spectroscopic markers of DNA damage. Molecules. MDPI, 25(3), 561. https://doi.org/10.3390/molecules25030561
   PubMed Web of Science ®Google Scholar
• Soloneski, S., Reigosa, M. A., Molinari, G., González, N. V., & Larramendy, M. L. (2008). Genotoxic and cytotoxic effects of carbofuran and furadan on Chinese hamster ovary (CHOK1) cells. Mutation Research, 656(1–2), 68–73. https://doi.org/10.1016/j.mrgentox.2008.07.007
   PubMed Web of Science ®Google Scholar
• Tang, H. L., Tang, H. M., Mak, K. H., Hu, S., Wang, S. S., Wong, K. M., Wong, C. S. T., Wu, H. Y., Law, H. T., Liu, K., Talbot, C. C., Lau, W. K., Montell, D. J., & Fung, M. C. (2012). Cell survival, DNA damage, and oncogenic transformation after a transient and reversible apoptotic response. Molecular Biology of the Cell, 23(12), 2240–2252. https://doi.org/10.1091/mbc.E11-11-0926
   PubMed Web of Science ®Google Scholar
• Terry, R. D., Masliah, E., Salmon, D. P., Butters, N., DeTeresa, R., Hill, R., Hansen, L. A., & Katzman, R. (1991). Physical basis of cognitive alterations in Alzheimer’s disease: synapse loss is the major correlate of cognitive impairment. Annals of Neurology, 30(4), 572–580. https://doi.org/10.1002/ana.410300410
   PubMed Web of Science ®Google Scholar
• Treffer, R., Lin, X., Bailo, E., Deckert-Gaudig, T., & Deckert, V. (2011). Distinction of nucleobases—A tip-enhanced Raman approach. Beilstein Journal of Nanotechnology, 2(1), 628–637. https://doi.org/10.3762/bjnano.2.66
   PubMedGoogle Scholar
• Tymchenko, E., Glova, V., Soldatov, A., Chikhirzhina, E., & Polyanichko, A. (2019). FTIR study of the secondary structure of DNA in complexes with platinum coordination compounds. Journal of Physics: Conference Series, 1400(3), 033004. https://doi.org/10.1088/1742-6596/1400/3/033004
   Google Scholar
• Wang, J., Chi, C., & Lin Chern, S. Y. (1997). Conformational changes in gastric carcinoma cell membrane protein correlated to cell viability after treatment with adamantly maleimide. Anticancer Research, 17, 3473–3478.
   PubMed Web of Science ®Google Scholar
• Wong, P. T. T., Papavassiliou, E. D., & Rigas, B. (1991). Phosphodiester stretching bands in the infrared spectra of human tissues and cultured cells. Applied Spectroscopy, 45(9), 1563–1567. https://doi.org/10.1366/0003702914335580
   Web of Science ®Google Scholar
• Wood, B. R. (2016). The importance of hydration and DNA conformation in interpreting infrared spectra of cells and tissues. Chemical Society Reviews, 45(7), 1980–1998. https://doi.org/10.1039/c5cs00511f
   PubMed Web of Science ®Google Scholar
• Yu, M. C., Rich, P., Foreman, L., Smith, J., Yu, M. S., Tanna Dibbur, V., Unwin, R., & Tam, F. W. K. (2017). Label free detection of sensitive mid-infrared biomarkers of glomerulonephritis in urine using Fourier transform infrared spectroscopy. Nature. Scientific Report, 7, 4601.
   PubMed Web of Science ®Google Scholar
• Zeljezic, D., Vrdoljak, A. L., Kopjar, N., Radic, B., & Milkovic Kraus, S. (2008). Cholinesterase-inhibiting and genotoxic effects of acute carbofuran intoxication in man: A case report. Basic & Clinical Pharmacology & Toxicology, 103(4), 329–335. https://doi.org/10.1111/j.1742-7843.2008.00294.x
   PubMed Web of Science ®Google Scholar
• Zhang, L. J., Min, S. G., Li, G. X., Xiong, Y. M., & Sun, Y. (2005). The mechanism of carbofuran interacts with calf thymus DNA. Guang pu xue yu guang pu fen xi = Guang pu, 25(5), 739–742.
   PubMedGoogle Scholar
• Zhou, P., Liu, B., & Lu, Y. (2005). DNA damaging effects of carbofuran and its main metabolites on mice by micronucleus test and single cell gel electrophoresis. Science in China Series C: Life Sciences, 48(S1), 40–47. https://doi.org/10.1007/BF02889800
   PubMedGoogle Scholar