Complexes of hydrogen peroxide molecules with DNA nucleic bases

References

• Baldacchino, G., Brun, E., Denden, I., Bouhadoun, S., Roux, R., Khodja, H., & Sicard-Roselli, C. (2019). Importance of radiolytic reactions during high-LET irradiation modalities: LET effect, role of O2 and radiosensitization by nanoparticles. Cancer Nanotechnology, 10(1), 1–21.
   Google Scholar
• Boscolo, D., Krämer, M., Durante, M., Fuss, M., & Scifoni, E. (2018). TRAX-chem: A pre-chemical and chemical stage extension of the particle track structure code TRAX in water targets. Chemical Physics Letters, 698, 11–18.
   Web of Science ®Google Scholar
• Boys, S. F., & Bernardi, F. (1970). The calculation of small molecular interactions by the differences of separate total energies. Some procedures with reduced errors. Molecular Physics, 19(4), 553–566.
   Web of Science ®Google Scholar
• Caer, L. S. (2011). Water radiolysis: Influence of oxide surfaces on H2 production under ionizing radiation. Water, 3, 235–253.
   Web of Science ®Google Scholar
• Chen, Q., Espey, M. G., Krishna, M. C., Mitchell, J. B., Corpe, C. P., Buettner, G. R., Shacter, E., & Levine, M. (2005). Pharmacologic ascorbic acid concentrations selectively kill cancer cells: action as a pro-drug to deliver hydrogen peroxide to tissues. Proceedings of the National Academy of Sciences of United States of America, 102(38), 13604–13609.
   PubMed Web of Science ®Google Scholar
• de Vera, P., Surdutovich, E., Mason, N. J., Currell, F. J., & Solov’yov, A. V. (2018). Simulation of the ion-induced shock waves effects on the transport of chemically reactive species in ion tracks. The European Physical Journal D, 72(9), 1–11.
   Web of Science ®Google Scholar
• Dobado, J., & Molina, J. (1999). Adenine- hydrogen peroxide system: DFT and MP2 investigation. The Journal of Physical Chemistry A, 103(24), 4755–4761.
   Web of Science ®Google Scholar
• Durante, M., Golubev, A., Park, W.-Y., & Trautmann, C. (2019). Applied nuclear physics at the new high-energy particle accelerator facilities. Physics Reports, 800, 1–37.
   Google Scholar
• Kr¨amer, M., & Durante, M. (2010). Ion beam transport calculations and treatment plans in particle therapy. The European Physical Journal D, 60(1), 195–202.
   Web of Science ®Google Scholar
• Kraft, G. (2000). Tumor therapy with heavy charged particles. Progress in Particle and Nuclear Physics, 45, 473–544.
   Web of Science ®Google Scholar
• Kreipl, M. S., Friedland, W., & Paretzke, H. G. (2009). Time-and space-resolved Monte Carlo study of water radiolysis for photon, electron and ion irradiation. Radiation and Environmental Biophysics, 48(1), 11–20.
   PubMed Web of Science ®Google Scholar
• Nimalasena, S., Gothard, L., Anbalagan, S., Allen, S., Sinnett, V., Mohammed, K., Kothari, G., Musallam, A., Lucy, C., Yu, S., Nayamundanda, G., Kirby, A., Ross, G., Sawyer, E., Castell, F., Cleator, S., Locke, I., Tait, D., Westbury, C. … Somaiah, N. (2020). Intratumoral hydrogen peroxide with radiation therapy in locally advanced breast cancer: Results from a phase 1 clinical trial. International Journal of Radiation Oncology Biology Physics, 108(4), 1019–1029.
   PubMed Web of Science ®Google Scholar
• Orabi, E. A., & English, A. M. (2018). A simple additive potential model for simulating hydrogen peroxide in chemical and biological systems. Journal of Chemical Theory and Computation, 14(5), 2808–2821.
   PubMed Web of Science ®Google Scholar
• Parrow, N. L., Leshin, J. A., & Levine, M. (2013). Parenteral ascorbate as a cancer therapeutic: A reassessment based on pharmacokinetics. Antioxidants & Redox Signaling, 19(17), 2141–2156.
   PubMed Web of Science ®Google Scholar
• Perepelytsya, S., Ulicny, J., & Volkov, S. N. (2021). Molecular dynamics study of the competitive binding of hydrogen peroxide and water molecules with DNA phosphate groups. European Biophysics Journal, 50(5), 759–770.
   PubMed Web of Science ®Google Scholar
• Piatnytskyi, D. V., Zdorevskyi, O. O., Perepelytsya, S. M., & Volkov, S. N. (2015). Understanding the mechanism of DNA deactivation in ion therapy of cancer cells: hydrogen peroxide action. The European Physical Journal D, 69(11), 1–7.
   Web of Science ®Google Scholar
• Piatnytskyi, D., Zdorevskyi, O., & Volkov, S. (2021). Interaction of hydrogen peroxide molecules with non-specific DNA recognition sites. The European Physical Journal D, 75(1), 1–9.
   Web of Science ®Google Scholar
• Ranji-Burachaloo, H., Fu, Q., Gurr, P. A., Dunstan, D. E., & Qiao, G. G. (2018). Improved fenton therapy using cancer cell hydrogen peroxide. Australian Journal of Chemistry, 71(10), 826–836.
   Web of Science ®Google Scholar
• Schlegel, H., Scuseria, G., Robb, M., Cheeseman, J., Montgomery, J., Jr, Vreven, T., Kudin, K., Burant, J., Millam, J., Iyengar, S., Tomasi, J., Barone, V., Mennucci, B., Cossi, M., Scalmani, G., Rega, N. … Pople, J. A. (2004). Gaussian 03, revision C. 02. Gaussian. Inc.
   Google Scholar
• Seeman, N. C., Rosenberg, J. M., & Rich, A. (1976). Sequence-specific recognition of double helical nucleic acids by proteins. Proceedings of the National Academy of Sciences, 73(3), 804–808.
   PubMed Web of Science ®Google Scholar
• So, Y., Neto, P., De Macedo, L. G. M., & Gargano, R. (2019). Theoretical investigation on H2O2-ng (He, Ne, Ar, Kr, Xe, and Rn) complexes suitable for stereodynamics: Interactions and thermal chiral rate consequences. Frontiers in Chemistry, 6, 671.
   PubMed Web of Science ®Google Scholar
• Solov’yov, A. V., Surdutovich, E., Scifoni, E., Mishustin, I., & Greiner, W. (2009). Physics of ion beam cancer therapy: a multiscale approach. Physical Review E, 79(1), 011909.
   Web of Science ®Google Scholar
• Surdutovich, E., Yakubovich, A. V., & Solov’yov, A. V. (2013). Biodamage via shock waves initiated by irradiation with ions. Scientific Reports, 3(1), 1–6.
   Google Scholar
• Uehara, S., & Nikjoo, H. (2006). Monte Carlo simulation of water radiolysis for low-energy charged particles. Journal of Radiation Research, 47(1), 69–81.
   PubMed Web of Science ®Google Scholar
• Zdorevskyi, O., & Volkov, S. N. (2018). Possible scenarios of DNA double-helix unzipping process in single-molecule manipulation experiments. European Biophysics Journal, 47(8), 917–924.
   PubMed Web of Science ®Google Scholar