Actigraphy-based parameter tuning process for adaptive notch filter and circadian phase shift estimation

References

• Ancoli-Israel S, Cole R, Alessi C, Chambers M, Moorcoroft W, Pollak CP. 2003. The role of actigraphy in the study of sleep and circadian rhythms. Sleep. 26:342–392. doi:10.1093/sleep/26.3.342
   PubMed Web of Science ®Google Scholar
• Beyer HG, Schwefel HP. 2002. Evolution strategies − a comprehensive introduction. Nat Comput. 1:3–52. doi:10.1023/A:1015059928466
   Google Scholar
• Burgess HJ, Eastman CI. 2005. The dim light melatonin onset following fixed and free sleep schedules. J Sleep Res. 14:229–237. doi:10.1111/j.1365-2869.2005.00470.x
   PubMed Web of Science ®Google Scholar
• Butkov N, Teofilo L. 2007. Fundamentals of sleep technology. Philadelphia, PA: Lippincott Williams & Wilkins.
   Google Scholar
• Coyne MD, Kesick CM, Doherty TJ, Kolka MA, Stephenson LA. 2000. Circadian rhythm changes in core temperature over the menstrual cycle: method for noninvasive monitoring. Am J Physiol Regul Integr Comp Physiol. 279:R1316–1320. doi:10.1152/ajpregu.2000.279.4.R1316
   PubMed Web of Science ®Google Scholar
• Crowley SJ, Suh C, Molina TA, Fogg LF, Sharkey KM, Carskadon MA. 2016. Estimating the dim light melatonin onset of adolescents within a 6-h sampling window: the impact of sampling rate and threshold method. Sleep Med. 20:59–66. doi:10.1016/j.sleep.2015.11.019
   PubMed Web of Science ®Google Scholar
• Forger DB, Jewett ME, Kronauer RE. 1999. A simpler model of the human circadian pacemaker. J Biol Rhythms. 14:532–537. doi:10.1177/074873099129000867
   PubMed Web of Science ®Google Scholar
• Forger DB, Peskin CS. 2003. A detailed predictive model of the mammalian circadian clock. Proc Natl Acad Sci USA. 100:14806–14811. doi:10.1073/pnas.2036281100
   PubMed Web of Science ®Google Scholar
• Herzog ED, Aton SJ, Numano R, Sakaki Y, Tei H. 2004. Temporal precision in the mammalian circadian system: a reliable clock from less reliable neurons. J Biol Rhythms. 19(1):35–46. doi:10.1177/0748730403260776
   PubMed Web of Science ®Google Scholar
• Horne JA, Ostberg O. 1976. A self-assessment questionnaire to determine morningness-eveningness in human circadian rhythms. Int J Chronobiol. 4:97–110. PMID: 1027738
   PubMedGoogle Scholar
• Hsu L, Ortega R, Damm G. 1999. A globally convergent frequency estimator. IEEE Trans Autom Control. 44:698–713. doi:10.1109/9.754808
   Web of Science ®Google Scholar
• Ito M, Kohsaka M, Honma K, Fukuda N, Honma S, Katsuno Y, Kawai I, Honma H, Morita N, Miyamoto T. 1995. Changes in biological rhythm and sleep structure during the menstrual cycle in healthy women. Seishin Shinkeigaku Zasshi. 97:155–164. PMID: 7777641
   PubMedGoogle Scholar
• Jewett ME, Forger DB, Kronauer RE. 1999. Revised limit cycle oscillator model of human circadian pacemaker. J Biol Rhythms. 14:493–499. doi:10.1177/074873049901400608
   PubMed Web of Science ®Google Scholar
• Julius A, Zhang J, Qiao W, Wen JT. 2016. Multi-input adaptive notch filter and observer for circadian phase estimation. Int J Adapt Control. 30:1375–1388. doi:10.1002/acs.2659
   Web of Science ®Google Scholar
• Julius A, Zhang J, Wen JT. 2019. Time optimal entrainment control for circadian rhythm. PLoS ONE. 14(12):e0225988. doi:10.1371/journal.pone.0225988
   PubMed Web of Science ®Google Scholar
• Kivelä A, Kauppila A, Ylöstalo P, Vakkuri O, Leppäluoto J. 1988. Seasonal, menstrual and circadian secretions of melatonin, gonadotropins and prolactin in women. Acta Physiol Scand. 132:321–327. doi:10.1111/j.1748-1716.1988.tb08335.x
   PubMedGoogle Scholar
• Knutsson A. 2003. Health disorders of shift workers. Occup Med (Lond). 53:103–108. doi:10.1093/occmed/kqg048
   PubMed Web of Science ®Google Scholar
• Kronauer RE, Forger DB, Jewett ME. 1999. Quantifying human circadian pacemaker response to brief, extended, and repeated light stimuli over the phototopic range. J Biol Rhythms. 14:501–516. doi:10.1177/074873049901400609
   Web of Science ®Google Scholar
• LeBourgeois MK, Carskadon MA, Akacem LD, Simpkin CT, Wright KP, Achermann P, Jenni OG. 2013. Circadian phase and its relationship to nighttime sleep in toddlers. J Biol Rhythms. 28:322–331. doi:10.1177/0748730413506543
   PubMed Web of Science ®Google Scholar
• Lewy AJ, Sack RL. 1989. The dim light melatonin onset as a marker for circadian phase position. Chronobiol Int. 6:93–102. doi:10.3109/07420528909059144
   PubMed Web of Science ®Google Scholar
• Lewy AJ, Sack RL, Singer CM. 1985. Immediate and delayed effects of bright light on human melatonin production: shifting “dawn” and “dusk” shifts the dim light melatonin onset (dlmo). Ann NY Acad Sci. 453:253–259. doi:10.1111/j.1749-6632.1985.tb11815.x
   PubMed Web of Science ®Google Scholar
• Lu Z, Klein-Cardena K, Lee S, Autonsen TM, Girvan M, Ott E. 2016. Resynchronization of circadian oscillators and the east-west asymmetry of jetlag. Chaos. 26:094811. doi:10.1063/1.4954275
   PubMed Web of Science ®Google Scholar
• Mojiri M, Karimi-Ghartemani M, Bakhshai A. 2007. Time-domain signal analysis using adaptive notch filter. IEEE Trans Signal Process. 55:85–93. doi:10.1109/TSP.2006.885686
   Web of Science ®Google Scholar
• Portaluppi F, Touitou Y, Smolensky MH. 2008. Ethical and methodological standards for laboratory and medical biological rhythm research. Chronobiol Int. 25:999–1016. doi:10.1080/07420520802544530
   PubMed Web of Science ®Google Scholar
• Qiao W, Wen JT, Julius A. 2017. Entrainment control of phase dynamics. IEEE Trans Autom Control. 63:445–450. doi:10.1109/TAC.2016.2555885
   Web of Science ®Google Scholar
• Refinetti R, Lissen GC, Halberg F. 2007. Procedures for numerical analysis of circadian rhythms. Biol Rhythm Res. 38(4):275–325. doi:10.1080/09291010600903692
   PubMed Web of Science ®Google Scholar
• Ruffio E, Saury D, Petit D, Girault M. 2011. Tutorial 2: zero-order optimization algorithms. Semantic Scholar. https://www.semanticscholar.org/paper/Tutorial-2-%3A-Zero-Order-optimization-algorithms-Ruffio-Saury/f3b4e17cdc5724a6064d6126e2dbfe86bf7ef742
   Google Scholar
• Serkh K, Forger DB. 2014. Optimal schedules of light exposure for rapidly correcting circadian misalignment. PLoS Comput Biol. 10:e1003523. doi:10.1371/journal.pcbi.1003523
   PubMed Web of Science ®Google Scholar
• Smolensky MH, Hermida RC, Reinberg A, Sackett-Lundeen L, Portaluppi F. 2016. Circadian disruption: new clinical perspective of disease pathology and basis for chronotherapeutic intervention. Chronobiol Int. 33(8):1101–1119. doi:10.1080/07420528.2016.1184678
   PubMed Web of Science ®Google Scholar
• Swaab DF, Filers E, Partiman TS. 1985. The suprachiasmatic nucleus of the human brain in relation to sex, age and senile dementia. Brain Res. 342:37–44. doi:10.1016/0006-8993(85)91350-2
   PubMed Web of Science ®Google Scholar
• Teicher MH, Barber NI. 1990. Cosifit: an interactive program for simultaneous multioscillator cosinor analysis of time-series data. Comput Biomed Res. 23(3):283–295. doi:10.1016/0010-4809(90)90022-5
   PubMedGoogle Scholar
• Trelea IC. 2003. The particle swarm optimization algorithm: convergence analysis and parameter selection. Inf Process Lett. 85:317–325. doi:10.1016/S0020-0190(02)00447-7
   Web of Science ®Google Scholar
• Verwey M, Robinson B, Amir S. 2013. Recording and analysis of circadian rhythms in running-wheel activity in rodents. J Vis Exp. 71:50186. doi:10.3791/50186
   Web of Science ®Google Scholar
• Voultsios A, Kennawlay DJ, Dawson D. 1997. Salivary melatonin as a circadian phase marker: validation and comparison to plasma melatonin. J Biol Rhythms. 12:457–466. doi:10.1177/074873049701200507
   PubMed Web of Science ®Google Scholar
• Winfree AT. 2001. The geometry of biological time. Berlin, Germany: Springer.
   Google Scholar
• Woelders T, Beersma DG, Gordijn MC, Hut RA, Wams EJ. 2017. Daily light exposure patterns reveal phase and period of the human circadian clock. J Biol Rhythm. 32(3):274–286. doi:10.1177/0748730417696787
   PubMed Web of Science ®Google Scholar
• Zakharova EM, Minashina IK. 2015. Review of multidimensional optimization. J Commun Technol El. 60:625–636. doi:10.1134/S1064226915060194
   Web of Science ®Google Scholar
• Zhang J, Wen JT, Julius A. 2012. Adaptive circadian rhythm estimator and its application to locomotor activity. The conference paper in 2012 IEEE Signal Process Med Biol Symp, pp. 1–6, NY, USA. doi:10.1109/SPMB.2012.6469471
   Google Scholar
• Zhang J, Wen JT, Julius A. 2013. Adaptive circadian argument estimator and its application to circadian argument control. The conference paper in 2013 Proc Am Control Conf, pp. 2295–2300, Washington DC. doi:10.1109/ACC.2013.6580176
   Google Scholar
• Zhang J, Qiao W, Wen JT, Julius A. 2016. Light-based circadian rhythm control: entrainment and optimization. Automatica. 68:44–55. doi:10.1016/j.automatica.2016.01.052
   Web of Science ®Google Scholar