Changes of the clock gene expression in central and peripheral organs of common carp exposed to constant lighting conditions

References

• Amaral IP, Johnston IA. 2012. Circadian expression of clock and putative clock-controlled genes in skeletal muscle of the zebrafish. Am J Physiol Regul Integr Comp Physiol. 302:R193–R206. doi:10.1152/ajpregu.00367.2011.
   PubMed Web of Science ®Google Scholar
• Betancor MB, McStay E, Minghetti M, Migaud H, Tocher DR, Davie A. 2014. Daily rhythms in expression of genes of hepatic lipid metabolism in Atlantic salmon (Salmo salar L.). PLoS One. 9:e106739. doi:10.1371/journal.pone.0106739.
   PubMed Web of Science ®Google Scholar
• Bloch G, Barnes BM, Gerkema MP, Helm B. 2013. Animal activity around the clock with no overt circadian rhythms: patterns, mechanisms and adaptive value. Proc Biol Sci. 280:20130019. doi:10.1098/rspb.2013.0019.
   PubMed Web of Science ®Google Scholar
• Block G, Geusz M, Khalsa S, Michel S, Whitmore D. 1995. Cellular analysis of a molluscan retinal biological clock. Ciba Found Symp. 183:51–66. doi:10.1002/9780470514597.ch4.
   PubMedGoogle Scholar
• Cahill GM. 2002. Clock mechanisms in zebrafish. Cell Tissue Res. 309:27–34. doi:10.1007/s00441-002-0570-7.
   PubMed Web of Science ®Google Scholar
• Cermakian N, Whitmore D, Foulkes NS, Sassone-Corsi P. 2000. Asynchronous oscillations of two zebrafish CLOCK partners reveal differential clock control and function. Proc Natl Acad Sci U S A. 97:4339–44. doi:10.1073/pnas.97.8.4339.
   PubMed Web of Science ®Google Scholar
• Davie A, Minghetti M, Migaud H. 2009. Seasonal variations in clock-gene expression in Atlantic Salmon (Salmo salar). Chronobiol Int. 26:379–95. doi:10.1080/07420520902820947.
   PubMed Web of Science ®Google Scholar
• Del Pozo A, Montoya A, Vera LM, Sánchez JA, Sánchez-Vázquez FJ. 2012a. Daily rhythms of clock gene expression, glycaemia and digestive physiology in diurnal/nocturnal European seabass. Physiol Behav. 106:446–50. doi:10.1016/j.physbeh.2012.03.006.
   PubMed Web of Science ®Google Scholar
• Del Pozo A, Sanchez-Ferez JA, Sanchez-Vazquez FJ. 2011. Circadian rhythms of self-feeding and locomotor activity in zebrafish (Danio rerio). Chronobiol Int. 28:39–47. doi:10.3109/07420528.2010.530728.
   PubMed Web of Science ®Google Scholar
• Del Pozo A, Vera LM, Sánchez JA, Sánchez-Vázquez FJ. 2012b. Molecular cloning, tissue distribution and daily expression of cry1 and cry2 clock genes in European seabass (Dicentrarchus labrax). Comp Biochem Physiol A. 163:364–71. doi:10.1016/j.cbpa.2012.07.004.
   PubMed Web of Science ®Google Scholar
• Doyle S, Menaker M. 2007. Circadian photoreception in vertebrates. Cold Spring Harb Symp Quant Biol. 72:499–508. doi:10.1101/sqb.2007.72.003.
   PubMedGoogle Scholar
• Falcón J, Besseau L, Magnanou E, Herrero MJ, Nagai M, Boeuf G. 2011. Melatonin, the time keeper: biosynthesis and effects in fish. Cybium. 35:3–18 doi:10.26028/cybium/2011-351-001.
   Web of Science ®Google Scholar
• Falcón J, Migaud H, Muñoz-Cueto JA, Carrillo M. 2010. Current knowledge on the melatonin system in teleost fish. Gen Comp Endocrinol. 165:469–82. doi:10.1016/j.ygcen.2009.04.026.
   PubMed Web of Science ®Google Scholar
• Hernández-Pérez J, Míguez JM, Naderi F, Soengas JL, López-Patiño MA. 2017. Influence of light and food on the circadian clock in liver of rainbow trout, Oncorhynchus mykiss. Chronobiol Int. 34:1259–72. doi:10.1080/07420528.2017.1361435.
   PubMed Web of Science ®Google Scholar
• Herrero MJ, Lepesant JMJ. 2014. Daily and seasonal expression of clock genes in the pituitary of the European sea bass (Dicentrarchus labrax). Gen Comp Endocrinol. 208:30–38. doi:10.1016/j.ygcen.2014.08.002.
   PubMed Web of Science ®Google Scholar
• Hirayama J, Fukuda I, Ishikawa T, Kobayashi Y, Todo T, Fukuda I, Ishikawa T, Kobayashi Y, Todo T, and Ishikawa T. 2003. New role of zCRY and zPER2 as regulators of sub-cellular distributions of zCLOCK and zBMAL proteins. Nucleic Acids Res. 31:935–43. doi:10.1093/nar/gkg174.
   PubMed Web of Science ®Google Scholar
• Hogenesch JB, Gu YZ, Jain S, Bradfield CA. 1998. The basic-helix-loop-helix-PAS orphan MOP3 forms transcriptionally active complexes with circadian and hypoxia factors. Proc Natl Acad Sci U S A. 95:5474–79. doi:10.1073/pnas.95.10.5474.
   PubMed Web of Science ®Google Scholar
• Hsu CY, Chuang YC, Chang FC, Chuang HY, Chiou TT, Lee CT. 2021. Disrupted sleep homeostasis and altered expressions of clock genes in rats with chronic lead exposure. Toxics. 9:217. doi:10.3390/toxics9090217.
   PubMed Web of Science ®Google Scholar
• Huang TS, Ruoff P, Fjelldal PG. 2010. Diurnal expression of clock genes in pineal gland and brain and plasma levels of melatonin and cortisol in Atlantic salmon parr and smolts. Chronobiol Int. 27:1697–714. doi:10.3109/07420528.2010.514630.
   PubMed Web of Science ®Google Scholar
• Hur SP, Takeuchi Y, Itoh H, Uchimura M, Takahashi K, Kang HC, Lee YD, Kim SJ, Takemura A. 2012. Fish sleeping under sandy bottom: interplay of melatonin and clock genes. Gen Comp Endocrinol. 177:37–45. doi:10.1016/j.ygcen.2012.01.007.
   PubMed Web of Science ®Google Scholar
• Iuvone PM, Tosini G, Pozdeyev N, Haque R, Klein DC, Chaurasia SS. 2005. Circadian clocks, clock networks, arylalkylamine N-acetyltransferase, and melatonin in the retina. Prog Retin Eye Res. 24:433–56. doi:10.1016/j.preteyeres.2005.01.003.
   PubMed Web of Science ®Google Scholar
• Kaneko M, Hernandez-Borsetti N, Cahill GM. 2006. Diversity of zebrafish peripheral oscillators revealed by luciferase reporting. Proc Natl Acad Sci U S A. 103:14614–19. doi:10.1073/pnas.0606563103.
   PubMed Web of Science ®Google Scholar
• Kobayashi Y, Ishikawa T, Hirayama J, Daiyasu H, Kanai S, Toh H, Fukuda I, Tsujimura T, Terada N, Kamei Y, et al. 2000. Molecular analysis of zebrafish photolyase/cryptochrome family: two types of cryptochromes present in zebrafish. Genes Cells. 5:725–38. doi:10.1046/j.1365-2443.2000.00364.x.
   PubMed Web of Science ®Google Scholar
• Lahiri K, Vallone D, Gondi SB, Santoriello C, Dickmeis T, Foulkes NS. 2005. Temperature regulates transcription in the zebrafish circadian clock. PLoS Biol. 3:e351. doi:10.1371/journal.pbio.0030351.
   PubMed Web of Science ®Google Scholar
• Lalpekhlui R, Renthlei Z, Trivedi AK. 2022. Molecular expression of clock genes in central and peripheral tissues of white-rumped munia (Lonchura striata). Chronobiol Int. 39:1058–67. doi:10.1080/07420528.2022.2062374.
   PubMed Web of Science ®Google Scholar
• López-Patiño MA, Rodríguez-Illamola A, Conde-Sieira M, Soengas JL, Míguez JM. 2011. Daily rhythmic expression patterns of Clock1a, Bmal1, and Per1 genes in retina and hypothalamus of the rainbow trout, Oncorhynchus mykiss. Chronobiol Int. 28:381–89. doi:10.3109/07420528.2011.566398.
   PubMed Web of Science ®Google Scholar
• Maywood ES, O’Neill JS, Reddy AB, Chesham JE, Prosser HM, Kyriacou CP, Godinho SI, Nolan PM, Hastings MH. 2007. Genetic and molecular analysis of the central and peripheral circadian clockwork of mice. Cold Spring Harb Symp Quant Biol. 72:85–94. doi:10.1101/sqb.2007.72.005.
   PubMedGoogle Scholar
• Menaker M, Moreira LF, Tosini G, Braz J. 1997. Evolution of circadian organization in vertebrates. Med Biol Res. 30:305–13. doi:10.1590/S0100-879X1997000300003.
   PubMed Web of Science ®Google Scholar
• Mohawk JA, Green CB, Takahashi JS. 2012. Central and peripheral circadian clocks in mammals. Annu Rev Neurosci. 35:445–62. doi:10.1146/annurev-neuro-060909-153128.
   PubMed Web of Science ®Google Scholar
• Okamura H, Yamaguchi S, Yagita K. 2002. Molecular machinery of the circadian clock in mammals. Cell Tissue Res. 309:47–56. doi:10.1007/s00441-002-0572-5.
   PubMed Web of Science ®Google Scholar
• Panda S, Hogenesch JB, Kay SA. 2002. Circadian rhythms from flies to human. Nature. 417:329–35. doi:10.1038/417329a.
   PubMed Web of Science ®Google Scholar
• Park JG, Park YJ, Sugama N, Kim SJ, Takemura A. 2007. Molecular cloning and daily variations of the Period gene in a reef fish Siganus guttatus. J Comp Physiol A. 193:403–11. doi:10.1007/s00359-006-0194-6.
   PubMed Web of Science ®Google Scholar
• Partch CL, Green CB, Takahashi JS. 2014. Molecular architecture of the mammalian circadian clock. Trends Cell Biol. 24:90–99. doi:10.1016/j.tcb.2013.07.002.
   PubMed Web of Science ®Google Scholar
• Peschel N, Helfrich-Förster C. 2011. Setting the clock–by nature: circadian rhythm in the fruitfly Drosophila melanogaster. FEBS Lett. 585:1435–42. doi:10.1016/j.febslet.2011.02.028.
   PubMed Web of Science ®Google Scholar
• Plautz JD, Kaneko M, Hall JC, Kay SA. 1997. Independent photoreceptive circadian clocks throughout Drosophila. Science. 278:1632–35. doi:10.1126/science.278.5343.1632.
   PubMed Web of Science ®Google Scholar
• Postlethwait JH, Yan YL, Gates MA, Horne S, Amores A, Brownlie A, Donovan A, Egan ES, Force A, Gong Z, et al. 1998. Vertebrate genome evolution and the zebrafish gene map. Nat Genet. 18:345–49. doi:10.1038/ng0498-345.
   PubMed Web of Science ®Google Scholar
• Potter GD, Skene DJ, Arendt J, Cade JE, Grant PJ, Hardie LJ. 2016. Circadian rhythm and sleep disruption: causes, metabolic consequences, and countermeasures. Endocr Rev. 37:584–608. doi:10.1210/er.2016-1083.
   PubMed Web of Science ®Google Scholar
• Renthlei Z, Gurumayum T, Borah BK, Trivedi AK. 2019. Daily expression of clock genes in central and peripheral tissues of tree sparrow (Passer montanus). Chronobiol Int. 36:110–21. doi:10.1080/07420528.2018.1523185.
   PubMed Web of Science ®Google Scholar
• Sánchez JA, Madrid JA, Sánchez-Vázquez FJ. 2010. Molecular cloning, tissue distribution, and daily rhythms of expression of per1 gene in European sea bass (Dicentrarchus labrax). Chronobiol Int. 27:19–33. doi:10.3109/07420520903398633.
   PubMed Web of Science ®Google Scholar
• Sánchez JA, Sánchez-Vázquez FJ. 2009. Feeding entrainment of daily rhythms of locomotor activity and clock gene expression in zebrafish brain. Chronobiol Int. 26:1120–35. doi:10.3109/07420520903232092.
   PubMed Web of Science ®Google Scholar
• Singh D, Rani S, Kumar V. 2013. Daily expression of six clock genes in central and peripheral tissues of a night-migratory songbird: evidence for tissue-specific circadian timing. Chronobiol Int. 30:1208–17. doi:10.3109/07420528.2013.810632.
   PubMed Web of Science ®Google Scholar
• Takahashi JS, Hong HK, Ko CH, McDearmon EL. 2008. The genetics of mammalian circadian order and disorder: implications for physiology and disease. Nat Rev Genet. 9:764–75. doi:10.1038/nrg2430.
   PubMed Web of Science ®Google Scholar
• Takahata S, Sogawa K, Kobayashi A, Ema M, Mimura J, Ozaki N, Fujii-Kuriyama Y. 1998. Transcriptionally active heterodimer formation of an Arnt-like PAS protein, Arnt3, with HIF-1a, HLF, and clock. Biochem Biophys Res Commun. 248:789–94. doi:10.1006/bbrc.1998.9012.
   PubMed Web of Science ®Google Scholar
• Takata M, Burioka N, Ohdo S, Takane H, Terazono H, Miyata M, Sako T, Suyama H, Fukuoka Y, Tomita K, et al. 2002. Daily expression of mRNAs for the mammalian clock genes Per2 and Clock in mouse suprachiasmatic nuclei and liver and human peripheral blood mononuclear cells. Jpn J Pharmacol. 90:263–69. doi:10.1254/jjp.90.263.
   PubMedGoogle Scholar
• Tamai TK, Carr AJ, Whitmore D. 2005. Zebrafish circadian clocks: cells that see light. Biochem Soc Trans. 33:962–66. doi:10.1042/BST0330962.
   PubMed Web of Science ®Google Scholar
• Vallone D, Lahiri K, Dickmeis T, Foulkes NS. 2005. Zebrafish cell clocks feel the heat and see the light! Zebrafish. 2:171–87. doi:10.1089/zeb.2005.2.171.
   PubMed Web of Science ®Google Scholar
• Velarde E, Haque R, Iuvone PM, Azpeleta C, Alonso-Gómez AL, Delgado MJ. 2009. Circadian clock genes of goldfish, Carassius auratus: cDNA cloning and rhythmic expression of period and cryptochrome transcripts in retina, liver, and gut. J Biol Rhythms. 24:104–13. doi:10.1177/0748730408329901.
   PubMed Web of Science ®Google Scholar
• Velingkaar N, Mezhnina V, Poe A, Makwana K, Tulsian R, Kondratov RV. 2020. Reduced caloric intake and periodic fasting independently contribute to metabolic effects of caloric restriction. Aging Cell. 19:e13138. doi:10.1111/acel.13138.
   PubMed Web of Science ®Google Scholar
• Vera LM, Migaud H. 2016. Hydrogen peroxide treatment in Atlantic salmon induces stress and detoxification response in a daily manner. Chronobiol Int. 33:530–42. doi:10.3109/07420528.2015.1131164.
   PubMed Web of Science ®Google Scholar
• Wang H. 2008. Comparative analysis of teleost fish genomes reveals preservation of different ancient clock duplicates in different fishes. Mar Genomics. 1:69–78. doi:10.1016/j.margen.2008.06.003
   PubMed Web of Science ®Google Scholar
• Wang H. 2009. Comparative genomic analysis of teleost fish bmal genes. Genetica. 136:149–61. doi:10.1007/s10709-008-9328-9.
   PubMed Web of Science ®Google Scholar
• Whitmore D, Foulkes NS, Strahle U, Sassone-Corsi P. 1998. Zebrafish Clock rhythmic expression reveals independent peripheral circadian oscillators. Nat Neurosci. 1:701–07. doi:10.1038/3703.
   PubMed Web of Science ®Google Scholar
• Wu Y, Tang D, Liu N, Xiong W, Huang H, Li Y, Ma Z, Zhao H, Chen P, Qi X, et al. 2017. Reciprocal regulation between the circadian clock and hypoxia signaling at the genome level in mammals. Cell Metab. 25:73–85. doi:10.1016/j.cmet.2016.09.009.
   PubMed Web of Science ®Google Scholar
• Zhao Z, Xu H, Liu Y, Mu L, Xiao J, Zhao H. 2015. Diurnal expression of the Per2 gene and protein in the lateral habenular nucleus. Int J Mol Sci. 16:16740–49. doi:10.3390/ijms160816740.
   PubMed Web of Science ®Google Scholar
• Zhdanova IV, Yu L, Lopez-Patiño M, Shang E, Kishi S, Guelin E. 2008. Aging of the circadian system in zebrafish and the effects of melatonin on sleep and cognitive performance. Brain Res Bull. 75:433–41. doi:10.1016/j.brainresbull.2007.10.053.
   PubMed Web of Science ®Google Scholar