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Articles

Epigenome- and Transcriptome-wide Changes in Muscle Stem Cells from Low Birth Weight Men

, , , , , , , , , , , , , , , , , & show all
Pages 58-71 | Received 23 Apr 2019, Accepted 12 Sep 2019, Published online: 30 Sep 2019

References

  • Whincup PH, Kaye SJ, Owen CG, et al. Birth weight and risk of type 2 diabetes: a systematic review. JAMA. 2008;300(24):2886–2897. doi:10.1001/jama.2008.886.
  • Hermann TS, Rask-Madsen C, Ihlemann N, et al. Normal insulin-stimulated endothelial function and impaired insulin-stimulated muscle glucose uptake in young adults with low birth weight. J Clin Endocrinol Metab. 2003;88(3):1252–1257. doi:10.1210/jc.2002-021550.
  • Vaag A, Jensen CB, Poulsen P, et al. Metabolic aspects of insulin resistance in individuals born small for gestational age. Horm Res. 2006;65:137–143.
  • Ozanne SE, Jensen CB, Tingey KJ, Storgaard H, Madsbad S, Vaag AA. Low birthweight is associated with specific changes in muscle insulin-signalling protein expression. Diabetologia. 2005;48(3):547–552. doi:10.1007/s00125-005-1669-7.
  • Jensen CB, Storgaard H, Madsbad S, Richter EA, Vaag AA. Altered skeletal muscle fiber composition and size precede whole-body insulin resistance in young men with low birth weight. J Clin Endocrinol Metab. 2007;92(4):1530–1534. doi:10.1210/jc.2006-2360.
  • Smallwood SA, Kelsey G. De novo DNA methylation: a germ cell perspective. Trends Genet. 2012;28(1):33–42. doi:10.1016/j.tig.2011.09.004.
  • Godfrey KM, Lillycrop KA, Burdge GC, Gluckman PD, Hanson MA. Non-imprinted epigenetics in fetal and postnatal development and growth. Nestle Nutr Inst Workshop Ser. 2013;71:57–63.
  • Ozanne SE, Constancia M. Mechanisms of disease: the developmental origins of disease and the role of the epigenotype. Nat Clin Pr Endocrinol Metab. 2007;3(7):539–546. doi:10.1038/ncpendmet0531.
  • Saffery R, Novakovic B. Epigenetics as the mediator of fetal programming of adult onset disease: what is the evidence? Acta Obs Gynecol Scand. 2014;93(11):1090–1098. doi:10.1111/aogs.12431.
  • Ozanne SE, Sandovici I, Constância M. Maternal diet, aging and diabetes meet at a chromatin loop. Aging (Albany NY). 2011;3(5):548–554. doi:10.18632/aging.v3i5.
  • Brons C, Jacobsen S, Nilsson E, et al. Deoxyribonucleic acid methylation and gene expression of PPARGC1A in human muscle is influenced by high-fat overfeeding in a birth-weight-dependent manner. J Clin Endocrinol Metab. 2010;95(6):3048–3056. doi:10.1210/jc.2009-2413.
  • Park JH, Stoffers DA, Nicholls RD, Simmons RA. Development of type 2 diabetes following intrauterine growth retardation in rats is associated with progressive epigenetic silencing of Pdx1. J Clin Invest. 2008;118:2316–2324.
  • Gillberg L, Perfilyev A, Brøns C, et al. Adipose tissue transcriptomics and epigenomics in low birthweight men and controls: role of high-fat overfeeding. Diabetologia. 2016;59(4):799–812. doi:10.1007/s00125-015-3852-9.
  • Schultz NS, Broholm C, Gillberg L, et al. Impaired leptin gene expression and release in cultured preadipocytes isolated from individuals born with low birth weight. Diabetes. 2014;63(1):111–121. doi:10.2337/db13-0621.
  • Hansen NS, Hjort L, Broholm C, et al. Metabolic and transcriptional changes in cultured muscle stem cells from low birth weight subjects. J Clin Endocrinol Metab. 2016;101(5):2254–2264. doi:10.1210/jc.2015-4214.
  • Broholm C, Olsson AH, Perfilyev A, et al. Epigenetic programming of adipose-derived stem cells in low birthweight individuals. Diabetologia. 2016;59(12):2664–2673. doi:10.1007/s00125-016-4099-9.
  • Chargé SBP, Rudnicki MA. Cellular and molecular regulation of muscle regeneration. Physiol Rev. 2004;84(1):209–238. doi:10.1152/physrev.00019.2003.
  • Laharrague P, Casteilla L. The emergence of adipocytes. Endocr Dev. 2010;19:21–30.
  • Sousa-Victor P, Muñoz-Cánoves P, Perdiguero E. Regulation of skeletal muscle stem cells through epigenetic mechanisms. Toxicol Mech Methods. 2011;21(4):334–342. doi:10.3109/15376516.2011.568980.
  • Woo M, Isganaitis E, Cerletti M, et al. Early life nutrition modulates muscle stem cell number: implications for muscle mass and repair. Stem Cells Dev. 2011;20(10):1763–1769. doi:10.1089/scd.2010.0349.
  • Kelstrup L, Hjort L, Houshmand-Oeregaard A, et al. Gene expression and DNA methylation of PPARGC1A in muscle and adipose tissue from adult offspring of women with diabetes in pregnancy. Diabetes. 2016;65(10):2900–2910. doi:10.2337/db15-1058.
  • Du P, Kibbe WA, Lin SM. lumi: a pipeline for processing Illumina microarray. Bioinformatics. 2008;24(13):1547–1548. doi:10.1093/bioinformatics/btn224.
  • Gentleman RC, Carey VJ, Bates DM, et al. Bioconductor: open software development for computational biology and bioinformatics. Genome Biol. 2004;5(10):R80. doi:10.1186/gb-2004-5-10-r80.
  • Chen YA, Lemire M, Choufani S, et al. Discovery of cross-reactive probes and polymorphic CpGs in the illumina infinium humanmethylation450 microarray. Epigenetics. 2013;8(2):203–209. doi:10.4161/epi.23470.
  • Du P, Zhang X, Huang CC, et al. Comparison of Beta-value and M-value methods for quantifying methylation levels by microarray analysis. BMC Bioinforma. 2010;11:587. doi:10.1186/1471-2105-11-587.
  • Bolstad BM, Irizarry RA, Astrand M, Speed TP. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics. 2003;19(2):185–193. doi:10.1093/bioinformatics/19.2.185.
  • Teschendorff AE, Marabita F, Lechner M, et al. A beta-mixture quantile normalization method for correcting probe design bias in illumina infinium 450 k DNA methylation data. Bioinformatics. 2013;29(2):189–196. doi:10.1093/bioinformatics/bts680.
  • Johnson WE, Li C, Rabinovic A. Adjusting batch effects in microarray expression data using empirical Bayes methods. Biostatistics. 2007;8(1):118–127. doi:10.1093/biostatistics/kxj037.
  • Benjamini Y, Drai D, Elmer G, Kafkafi N, Golani I. Controlling the false discovery rate in behavior genetics research. Behav Brain Res. 2001;125(1–2):279–284. doi:10.1016/S0166-4328(01)00297-2.
  • Bolado-Carrancio A, Riancho JA, Sainz J, Rodríguez-Rey JC. Activation of nuclear receptor NR5A2 increases Glut4 expression and glucose metabolism in muscle cells. Biochem Biophys Res Commun. 2014;446(2):614–619. doi:10.1016/j.bbrc.2014.03.070.
  • Ma Q, Fode C, Guillemot F, Anderson DJ. Neurogenin1 and neurogenin2 control two distinct waves of neurogenesis in developing dorsal root ganglia. Genes Dev. 1999;13(13):1717–1728. doi:10.1101/gad.13.13.1717.
  • López-Doménech G, Serrat R, Mirra S, et al. The eutherian Armcx genes regulate mitochondrial trafficking in neurons and interact with Miro and Trak2. Nat Commun. 2012;3:814. doi:10.1038/ncomms1829.
  • Diaz M, Martel N, Fitzsimmons RL, et al. Ski overexpression in skeletal muscle modulates genetic programs that control susceptibility to diet-induced obesity and insulin signaling. Obesity (Silver Spring). 2012;20(11):2157–2167. doi:10.1038/oby.2012.101.
  • Murray J, Auwerx J, Huss JM. Impaired myogenesis in estrogen-related receptor γ (ERRγ)-deficient skeletal myocytes due to oxidative stress. Faseb J. 2013;27(1):135–150. doi:10.1096/fj.12-216564.
  • Matsakas A, Yadav V, Lorca S, Narkar V. Muscle ERRγ mitigates duchenne muscular dystrophy via metabolic and angiogenic reprogramming. Faseb J. 2013;27(10):4004–4016. doi:10.1096/fj.12-216564.
  • Jacobsen SC, Brøns C, Bork-Jensen J, et al. Effects of short-term high-fat overfeeding on genome-wide DNA methylation in the skeletal muscle of healthy young men. Diabetologia. 2012;55(12):3341–3349. doi:10.1007/s00125-012-2717-8.
  • Berisha SZ, Serre D, Schauer P, Kashyap SR, Smith JD. Changes in whole blood gene expression in obese subjects with type 2 diabetes following bariatric surgery: a pilot study. PLoS One. 2011;6(3):e16729. doi:10.1371/journal.pone.0016729.
  • Sun XJ, Pons S, Asano T, Myers MG, Glasheen E, White MF. The Fyn tyrosine kinase binds Irs-1 and forms a distinct signaling complex during insulin stimulation. J Biol Chem. 1996;271(18):10583–10587. doi:10.1074/jbc.271.18.10583.
  • Mortensen B, Poulsen P, Wegner L, et al. Genetic and metabolic effects on skeletal muscle AMPK in young and older twins. Am J Physiol Endocrinol Metab. 2009;297(4):E956–64. doi:10.1152/ajpendo.00058.2009.
  • Yamada E, Pessin JE, Kurland IJ, Schwartz GJ, Bastie CC. Fyn-dependent regulation of energy expenditure and body weight is mediated by tyrosine phosphorylation of LKB1. Cell Metab. 2010;11(2):113–124. doi:10.1016/j.cmet.2009.12.010.
  • Brøns C, Lilleøre SK, Jensen CB, Toubro S, Vaag A, Astrup A. Increased nocturnal fat oxidation in young healthy men with low birth weight: results from 24-h whole-body respiratory chamber measurements. Metabolism. 2013;62(5):709–716. doi:10.1016/j.metabol.2013.05.008.
  • Ribel-Madsen A, Ribel-Madsen R, Brøns C, Newgard CB, Vaag AA, Hellgren LI. Plasma acylcarnitine profiling indicates increased fatty acid oxidation relative to tricarboxylic acid cycle capacity in young, healthy low birth weight men. Physiol Rep. 2016;4:19. doi:10.14814/phy2.12977.
  • Marks P, Rifkind RA, Richon VM, Breslow R, Miller T, Kelly WK. Histone deacetylases and cancer: causes and therapies. Nat Rev Cancer. 2001;1(3):194–202. doi:10.1038/35106079.
  • Gao C, Liu Y, Lam M, Kao H-Y. Histone deacetylase 7 (HDAC7) regulates myocyte migration and differentiation. Biochim Biophys Acta. 2010;1803(10):1186–1197. doi:10.1016/j.bbamcr.2010.06.008.
  • Dayeh T, Volkov P, Salö S, et al. Genome-wide DNA methylation analysis of human pancreatic islets from type 2 diabetic and non-diabetic donors identifies candidate genes that influence insulin secretion. Greally JM, ed. PLoS Genet. 2014;10(3):e1004160. doi:10.1371/journal.pgen.1004541.
  • Daneshpajooh M, Bacos K, Bysani M, et al. HDAC7 is overexpressed in human diabetic islets and impairs insulin secretion in rat islets and clonal beta cells. Diabetologia. 2017;60(1):116–125. doi:10.1007/s00125-016-4113-2.

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