Identification of Genes Involved in Positive Selection of CD4⁺8⁺ Thymocytes: Expanding the Inventory

REFERENCES

• Cebrat M., Miazek A., Kisielow P. Identification of a third evolutionarily conserved gene within the RAG locus and its RAG1-dependent and -independent regulation. Eur. J. Immunol. 2005; 35: 2230–2238
   PubMedGoogle Scholar
• DeRyckere D., Mann D. L., DeGregori J. Characterization of transcriptional regulation during negative selection in vivo. J. Immunol. 2003; 171: 802–811
   PubMedGoogle Scholar
• Elgoyhen A. B., Johnson D. S., Boulter J., Vetter D. E., Heinemann S. Alpha 9: an acetylcholine receptor with novel pharmacological properties expressed in rat cochlear hair cells. Cell 1994; 79: 705–715
   PubMed Web of Science ®Google Scholar
• Goh S. H., Park J. H., Lee Y. J, Lee H. G., Yoo H. S., Lee I. C., Park J. H., Kim Y. S., Lee C. C. Gene expression profile and identification of differentially expressed transcripts during human intrathymic T-cell development by cDNA sequencing analysis. Genomics 2000; 70: 1–18
   PubMedGoogle Scholar
• He X., Kappes D. J. CD4/CD8 lineage commitment: light at the end of the tunnel?. Curr. Opin. Immunol. 2006; 18: 135–142
   PubMedGoogle Scholar
• Hoffmann R., Bruno L., Seidl T., Rolink A., Melchers F. Rules for gene usage inferred from a comparison of large-scale gene expression profiles of T and B lymphocyte development. J. Immunol. 2003; 170: 1339–1353
   PubMedGoogle Scholar
• Huang Y. H., Li D., Winoto A., Robey E. A. Distinct transcriptional programs in thymocytes responding to T cell receptor, Notch, and positive selection signals. Proc. Natl. Acad. Sci. USA 2004; 101: 4936–4941
   PubMedGoogle Scholar
• Hubank M., Schatz D. G. cDNA Representational difference analysis: a sensitive and flexible method for identification of differentially expressed genes. Method. Enzymol. 1999; 303: 325–349
   PubMedGoogle Scholar
• Kisielow J., Nairn A. C., Karjalainen K. TARPP, a novel protein that accompanies TCR gene rearrangement and thymocyte education. Eur. J. Immunol. 2001; 31: 1141–1149
   PubMedGoogle Scholar
• Kisielow P., Bluthmann H., Staerz U. D., Steinmetz M., von Boehmer H. Tolerance in T-cell-receptor transgenic mice involves deletion of nonmature CD4+8+ thymocytes. Nature 1988; 333: 742–746
   PubMed Web of Science ®Google Scholar
• Kisielow P., von Boehmer H. Development and selection of T cells: facts and puzzles. Adv. Immunol. 1995; 58: 87–209
   PubMed Web of Science ®Google Scholar
• Krejci E., Thomine S., Boschetti N., Legay C., Sketelj J., Massoulie J. The mammalian gene of acetylcholinesterase-associated collagen. J. Biol. Chem. 1997; 272: 22840–22847
   PubMed Web of Science ®Google Scholar
• Li C., Wong W. H. Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection. Proc. Natl. Acad. Sci. USA 2001; 98: 31–36
   PubMed Web of Science ®Google Scholar
• Matuszyk J., Kobzdej M., Ziolo E., Kalas W., Kisielow P., Strzadala L. Thymic lymphomas are resistant to Nur 77-mediated apoptosis. Biochem. Biophys. Res. Commun. 1988; 249: 279–282
   Google Scholar
• Mick V. E., Starr T. K., McCaughtry T. M., McNeil L. K., Hogquist K. A. The regulated expression of a diverse set of genes during thymocyte positive selection in vivo. J. Immunol. 2004; 173: 5434–5444
   PubMedGoogle Scholar
• Nitta T., Nasreen M., Seike T., Goji A., Ohigashi I., Miyazaki T., Ohta T., Kanno M., Takahama Y. IAN family critically regulates survival and development of T lymphocytes. PLoS Biol. 2006; 4: 593–605
   Web of Science ®Google Scholar
• Peng H., Ferris R. L., Matthews T., Hiel H., Lopez-Albaitero A., Lustig L. R. Characterization of the human nicotinic acetylcholine receptor subunit alpha (alpha) 9 (CHRNA9) and alpha (alpha) 10 (CHRNA10) in lymphocytes. Life Sci. 2004; 76: 263–280
   PubMed Web of Science ®Google Scholar
• Prashar Y., Weissman S. M. Analysis of differentia gene expression by display pf 3' end restriction fragment sof cDNAs. Proc. Natl. Acad. Sci. USA 1996; 93: 659–663
   PubMed Web of Science ®Google Scholar
• Schmitz I., Clayton L. K., Reinherz E. L. Gene expression analysis of thymocyte selection in vivo. Int. Immunol. 2003; 15: 1237–1248
   PubMedGoogle Scholar
• Starr T. K., Jameson S. C., Hogquist K. A. Positive and negative selection of T cells. Annu. Rev. Immunol. 2003; 21: 139–176
   PubMed Web of Science ®Google Scholar
• Strzadala L., Miazek A., Matuszyk J., Kisielow P. Role of thymic selection in the development of thymic lymphomas In TCR transgenic mice. Int. Immunol. 1997; 9: 127–138
   PubMedGoogle Scholar
• Sutcliffe J. G., Foye P. E., Erlander M. G., Hilbush B. S., Bodzin L. J., Durham J. T., Hasel K. W. TOGA: an automated parsing technology for analyzing expression of nearly all genes. Proc. Natl. Acad. Sci. USA 2000; 97: 1976–1981
   PubMed Web of Science ®Google Scholar
• Teague T. K., Hildeman D., Kedl R. M., Mitchell T., Rees W., Schaefer B. C., Bender J., Kappler J., Marrack P. Activation changes the spectrum but not the diversity of genes expressed by T cells. Proc. Natl. Acad. Sci. USA 1999; 96: 12691–12696
   PubMed Web of Science ®Google Scholar
• Terszowski G., Jankowski A., Hendriks W. J., Rolink A. G., Kisielow P. Within the hemopoietic system, LAR phosphatase is a T cell lineage-specific adhesion receptor-like protein whose phosphatase activity appears dispensable for T cell development, repertoire selection and function. Eur. J. Immunol. 2001; 31: 832–840
   PubMedGoogle Scholar
• Tiong Ong S., Ly C., Nguyen M., Kay Brightman B., Fan H. Expression profiling of a transformed thymocyte cell line undergoing maturation in vitro identifies multiple genes involved in positive selection. Cell. Immunol. 2003; 221: 64–79
   PubMedGoogle Scholar
• Velculescu V. E., Zhang L., Vogelstein B., Kinzler K. W. Serial analysis of gene expression. Science 1995; 270: 484–487
   PubMed Web of Science ®Google Scholar
• Vetter D. E., Liberman M. C., Mann J., Barhanin J., Boulter J., Brown M. C., Saffiote-Kolman J., Heinemann S. F., Elgoyhen A. B. Role of alpha9 nicotinic ACh receptor subunits in the development and function of cochlear efferent innervation. Neuron 1999; 23: 93–103
   PubMed Web of Science ®Google Scholar
• von Boehmer H., Aifantis I., Gounari F., Azogui O., Haughn L., Apostolou I., Jaeckel E., Grassi F., Klein L. Thymic selection revisited: how essential is it?. Immunol. Rev. 2003; 191: 62–78
   PubMed Web of Science ®Google Scholar