362
Views
6
CrossRef citations to date
0
Altmetric
Original Articles

SUPPORTING CORAL REEF ECOSYSTEMS RESEARCH THROUGH MODELLING A REUSABLE ONTOLOGY FRAMEWORK

, &
Pages 77-101 | Published online: 29 Jan 2010

REFERENCES

  • AIMS . 2007 . Threats to coral reefs. Australian Institute of Marine Science. http://www.aims.gov.au/docs/research/biodiversity-ecology/threats/threats.html. Last accessed January 2009.
  • AIMS . 2008 . Marine Blueprint – Climate change and the fate of the Great Barrier Reef. Australian Institute of Marine Science. http://www.aims.gov.au/docs/research/climate-change/position-article.html. Last accessed January 2009.
  • AIMS Data Centre . 2008 . The Future of the Reef. http://data.aims.gov.au/reefstate/sci/reefstate/. Last accessed January 2009.
  • Altintas , I. , C. Berkley , E. Jaeger , M. Jones , B. Ludäscher , and S. Mock . 2004 . Kepler: An extensible system for design and execution of scientific workflows . In: Proceedings of the 16th International Conference on Scientific and Statistical Database Management (SSDBM'04) , June , Santorini Island , Greece .
  • Antoniou , G. , and F. van Harmelen . 2004 . A Semantic Web Primer. Cambridge , MA : The MIT Press .
  • Atkinson , I. M. , D. du Boulay , C. Chee , K. Chiu , P. Coddington , A. Gerson , T. King , D. McMullen , R. Quilici , P. Turner , A. Wendelborn , M. Wyatt , and D. Zhang . 2007 . Developing CIMA-based cyberinfrastructure for remote access to scientific instruments and collaborative e-research . In: Proceedings of the Fifth Australasian Symposium on ACSW Frontiers , January, Ballarat , Australia .
  • Berkelmans , R. 2009 . Bleaching and mortality thresholds: How much is too much? In: Coral Bleaching . Berlin/Heidelberg , Germany : Springer . pp. 103 – 119 .
  • Berkelmans , R. , G. De'ath , S. Kininmonth , and W. J. Skirving . 2004 . A comparison of the 1998 and 2002 coral bleaching events on the Great Barrier Reef: Spatial correlation, patterns, and predictions . Coral Reefs 23 ( 1 ): 74 – 83 .
  • Clark , B. R. , H. C. J. Godfray , I. J. Kitching , S. J. Mayo , and M. J. Scoble . 2009 . Taxonomy as an eScience . Phil. Trans. R. Soc. A 367 ( 1890 ): 953 – 966 .
  • Corcho , O. , M. Fernández-López , and A. Gómez-Pérez . 2003 . Methodologies, tools and languages for building ontologies: Where is their meeting point? Data Knowl. Eng. 46 ( 1 ): 41 – 64 .
  • Commonwealth Scientific and Industrial Research Organisation (CSIRO) . 2008 . Divisional Data Centre, Australia. http://www.marine.csiro.au/datacentre. Last accessed March 2008 .
  • Davey , M. , G. Holmes , and R. Johnstone . 2008 . High rates of nitrogen fixation (acetylene reduction) on coral skeletons following bleaching mortality . Coral Reefs 27 ( 1 ): 227 – 236 .
  • Great Barrier Reef Marine Park Authority (GBRMPA) . 2006 . Australian Government. http://www.gbrmpa. gov.au/. Last accessed May 2006 .
  • Gleeson , M. W. , and A. E. Strong . 1995 . Applying MCSST to coral reef bleaching . Advances in Space Research 16 ( 10 ): 151 – 154 .
  • Gomez-Perez , A. , O. Corcho , and M. Fernandez-Lopez . 2004 . Ontological Engineering with Examples from the Areas of Knowledge Management, e-Commerce and the Semantic Web. First Edition (Advanced Information and Knowledge Processing). London : Springer .
  • Guarino , N. 1997 . Understanding, building and using ontologies . International Journal of Human-Computer Studies 46 ( 2–3 ): 293 – 310 .
  • Hey , T. , and A. E. Trefethen . 2003 . The data deluge: An e-Science perspective . In: Grid Computing – Making the Global Infrastructure a Reality , eds. F. Berman , G. C. Fox , and A. J. G. Hey . West Sussex , UK : Wiley and Sons .
  • Horrocks , I. , P. F. Patel-Schneider , and F. van Harmelen . 2003 . From SHIQ and RDF to OWL: The making of a web ontology language . Journal of Web Semantics 1 ( 1 ): 7 – 26 .
  • Hughes , T. P. , A. H. Baird , D. R. Bellwood , M. Card , S. R. Connolly , C. Folke , R. Grosberg , O. Hoegh-Guldberg , J. B. C. Jackson , J. Kleypas , J. M. Lough , P. Marshall , M. Nystrom , S. R. Palumbi , J. M. Pandolfi , B. Rosen , and J. Roughgarden . 2003 . Climate change, human impacts, and the resilience of coral reefs . Science 301 ( 5635 ): 929 – 933 .
  • Integrated Marine Observing System (IMOS) . 2008 . http://imos.org.au/. Last accessed June 2008 .
  • Intergovernmental Panel on Climate Change (IPCC) . 2007 . Climate change 2007: The physical basis . In: Contribution of Working Group I to the Fourth Assessment Report of the Intergovernmental Panel on Climate Change. Cambridge , UK : Cambridge University Press .
  • Jarrar , M. , and R. Meersman . 2008 . Ontology engineering – The DOGMA approach . In: Advances in Web Semantic. Berlin/Heidelberg : Springer .
  • Kininmonth , S. , S. Bainbridge , I. Atkinson , E. Gilla , L. Barrald , and R. Vidaude . 2004 . Sensor networking the Great Barrier Reef . Spatial Sciences Qld 1 : 34 – 38 .
  • Marshall , P. , and H. Schuttenberg . 2006 . A Reef Manager'S Guide to Coral Bleaching . G.B.R.M.P. Authority (eds.), Great Barrier Reef Marine Park Authority, Townsville, Australia .
  • Maynard , J. , K. Anthony , P. Marshall , and I. Masiri . 2008 . Major bleaching events can lead to increased thermal tolerance in corals . Marine Biology 155 ( 2 ): 173 – 182 .
  • McGuinness , D. L. , and F. van Harmelen . 2004 . OWL Web Ontology Language Overview [W3C Recommendation]. http://www.w3.org/TR/owl-features/. Last accessed February 2009.
  • Motik , B. , U. Sattler , and R. Studer . 2005 . Query answering for OWL-DL with rules . Web Semantics: Science, Services and Agents on the World Wide Web 3 ( 1 ): 41 – 60 .
  • Myers , T. S. , I. M. Atkinson , and W. J. Lavery . 2007 . The Semantic Reef: Managing complex knowledge to predict coral bleaching on the Great Barrier Reef . In: Proceedings of the Fifth Australasian Symposium on ACSW Frontiers . Ballarat , Australia .
  • Myers , T. S. , I. M. Atkinson , and J. Maynard . 2007 . The Semantic Reef: An eco-informatics approach for modelling coral bleaching within the Great Barrier Reef . In: ERE Environmental Research Event. Cairns , Queensland .
  • NASA . 2009 . Semantic Web for Earth and Environmental Terminology (SWEET). Jet Propulsion Laboratory, California Institute of Technology. http://sweet.jpl.nasa.gov/ontology/. Last accessed July 2009 .
  • National Oceanic and Atmospheric Administration (NOAA) . 2009 . Coral Reef Watch – Methodology and description. http://coralreefwatch.noaa.gov/ satellite/methodology/methodology.html. Last accessed May 2009 .
  • Noy , N. F. , and D. L. McGuinness . 2001 . Ontology development 101: A guide to creating your first ontology . Knowledge Systems Laboratory 1 – 5 .
  • O'Connor , M. , R. Shankar , and A. Das . 2006 . An ontology-driven mediator for querying time-oriented biomedical data . In: Proceedings from the 19th IEEE International Symposium on Computer-Based Medical Systems . (CMBS 2006), 22–23 June , Salt Lake City , UT .
  • O'Connor , M. J. , H. Knublauch , S. W. Tu , B. Grossof , M. Dean , W. E. Grosso , and M. A. Musen . 2005 . Supporting rule system interoperability on the Semantic Web with SWRL . In: Fourth International Semantic Web Conference (ISWC-2005) , Galway , Ireland .
  • O'Connor , M. J. , S. W. Tu , C. I. Nyulas , A. K. Das , and M. A. Musen . 2007 . Querying the Semantic Web with SWRL . In: The International RuleML Symposium on Rule Interchange and Applications (RuleML2007) , Orlando , FL .
  • Page , R. D. M. 2006 . Taxonomic names, metadata, and the semantic web . Biodiversity Informatics 3 : 1 – 15 .
  • Page , R. D. M. 2008 . Biodiversity informatics: The challenge of linking data and the role of shared identifiers . Briefings in Bioinformatics 9 ( 5 ): 345 – 354 .
  • Protégé . 2009 . The ontology editor and knowledge acquisition system. Stanford University. http://protege.stanford.edu/. Last accessed April 2009.
  • Rector , A. , N. Drummond , M. Horridge , J. Rogers , H. Knublauch , R. Stevens , H. Wang , and C. Wroe . 2004 . OWL Pizzas: Practical experience of teaching OWL-DL: Common errors and common patterns . In: Proceedings of the European Conference on Knowledge Acquistion (EKAW 2004) , Northampton , UK .
  • Science Environment for Ecological Knowledge (SEEK) . 2009 . http://seek.ecoinformatics.org/. Last accessed March 2009 .
  • Stocks , K. I. , C. Neiswender , A. W. Isenor , J. Graybeal , N. Galbraith , E. T. Montgomery , P. Alexander , S. Watson , L. Bermudez , A. Gale , and K. Hogrefe . 2009 . The MMI Guides: Navigating the world of marine metadata. http://marinemetadata.org/guides. Last accessed April 2009.
  • Uschold , M. , and M. Gruninger . 1996 . Ontologies: Principles, methods and applications . Knowledge Engineering Review 11 : 93 – 136 .
  • Uschold , M. , and M. King . 1995 . Towards a methodology for building ontologies . In: International Joint Conference on Artificial Intelligence (IJCAI-95) , December 1996 , Montreal , Canada .

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.