Models to Study Colonisation and Colonisation Resistance

References

• Collins FM, Carter PB. Growth of Salmonellae in orally infected germ-free mice. Infect Immun 1978; 21: 41–7.
   PubMed Web of Science ®Google Scholar
• Smith HW, Tucker JF. The effect of feeding diets containing permitted antibiotics on the faecal excretion of Salmonella typhimurium by experimentally infected chickens. J Hygiene 1975; 75: 293–301.
   PubMedGoogle Scholar
• Bohnhoff M, Drake BL, Miller CP. Effect of streptomycin on susceptibility of the intestine tract to experimental salmonella infection. Proc Soc Exp Biol Med 1954; 86: 132–7.
   Google Scholar
• Freter R. The fatal enteric cholera infection in the guinea pig achieved by inhibition of normal enteric flora. J Infect Dis 1955; 97: 57–65.
   PubMed Web of Science ®Google Scholar
• Freter R. Experimental enteric shigella and vibrio infection in mice and guinea pigs. J Exp Med 1956; 104: 411–8.
   PubMed Web of Science ®Google Scholar
• Burr DH, Sugiyama H, Harvis G. Susceptibility to enteric botulinum colonization of antibiotic treated adult mice. In-fect Immun 1982; 36: 103–6.
   Google Scholar
• Nielsen EM, Schlundt J. Use of norfoxacin to study coloni-sation ability of Escherichia coli in vivo and in vitro models of the porcine gut. Antimicrob Agents Chemother 1992; 36: 401–7.
   Web of Science ®Google Scholar
• Mysore JV, Duhamel GE Morphometric analysis of enteric lesions in C3H/HeN mice inoculated with Serpulina hyo-dysentericae serotypes 2 and 4 with or without oral strepto-mycin pretreatment. Can J Vet Res 1994; 58: 281–6.
   Web of Science ®Google Scholar
• Sugiyama H, Mills DC. Intraintestinal toxin in infant mice challenged intragastrically with Clostridium botulinum spores. Infect Immun 1978; 21: 59–63.
   Web of Science ®Google Scholar
• Rolfe RD, Iaconis JP. Intestinal colonization of infant ham-sters with Clostridium difficile. Infect Immun 1983; 42: 480–6.
   PubMed Web of Science ®Google Scholar
• Gorbach SL, Barza M, Giuliano M, Jacobus NV. Coloniza-tion resistance of the human intestinal microflora: testing the hypothesis in normal volunteers. Eur J Clin Microbiol Infect Dis 1988; 7: 98–102.
   PubMed Web of Science ®Google Scholar
• Bothell° SP, Barclay FE, Welch AR. Evaluation of the predictive capability of an in vitro model of colonization resistance to Clostridium difficile infection. Microb Ecol Health Dis 1988; 1: 61–4.
   Google Scholar
• Wilson KH, Sheagren JV, Freter R. Population dynamics of ingested Clostridium difficile in the gastrointestinal tract of the Syrian hamster. J Infect Dis 1985; 151: 355–61.
   Google Scholar
• Larson HE, Bothell° SP. Quantitative study of antibiotic-in-duced susceptibility to Clostridium difficile enterocecitis in hamsters. Antimicrob Agents Chemother 1990; 34: 1348–53.
   PubMed Web of Science ®Google Scholar
• Pazzaglia G, Winoto I, Jennings G. Oral challenge with Aeromonas in protein-malnourished mice. J Diarrhoeal Dis Res 1994; 12: 108–12.
   Google Scholar
• Chiang SL, Taylor RK, Koomey M, Mekalanos JJ. Single amino acid substitutions in the N-terminus of Vibrio cholerae TcpA affect colonization, autoagglutination, and serum resistance. Mol Microbiol 1995; 17: 1133–42.
   Web of Science ®Google Scholar
• Whitman MS, Pitsakis PG, DeJesus E, Osborne AJ, Levison ME, Johnson CC. Gastrointestinal tract colonization with vancomycin-resistant Enterococcus faecium in an animal model. Antimicrob Agents Chemother 1996; 40: 1526–30.
   PubMed Web of Science ®Google Scholar
• Lim JK, Gunther NW 4th, Zhao H, Johnson DE, Keay SK, Mobley HL. In vivo phase variation of Escherichia coli type 1 fimbrial genes in women with urinary tract infection. Infect Immun 1998; 66: 3303–10.
   Google Scholar
• Pei Z, Burucoa C, Grignon B, Baquar S, Huang XZ, Kopecko DJ, Bourgeois AL, Fauchere JL, Blaser MJ. Muta-tion in the peblA locus of Campylobacter jejuni reduces interactions with epithelial cells and intestinal colonization of mice. Infect Immun 1998; 66: 938–43.
   Google Scholar
• Heidt PJ, Koopman JP, Kennis HM, van den Logt if, Hectors MP, Nagengast FM, Timmermans CP, de Groot CW. The use of a rat-derived microflora for providing colonization resistance in SPF rats. Lab Anim 1990; 24: 375–9.
   Google Scholar
• Bovee-Oudenhoven I, Tennont D, Dekker R, Van der Meer R. Calcium in milk and fermentation by yoghurt bacteria increase the resistance of rats to Salmonella infection. Gut 1996; 38: 59–65.
   Google Scholar
• Bovee-Oudenhoven I, Van der Meer R. Protective effects of dietary lactulose and calcium phosphate against Salmonella infection. Scand J Gastroenterol Suppl 1997; 222: 112–4.
   Google Scholar
• Bovee-Oudenhoven IM, Termont DS, Heidt PJ, Van der Meer R. Increasing the intestinal resistance of rats to the invasive pathogen Salmonella enteritidis: additive effects of dietary lactulose and calcium. Gut 1997; 40: 497–504.
   Google Scholar
• Caplan MS, Hedlund E, Adler L, Hsueh W. Role of as-phyxia and feeding in a neonatal rat model of necrotizing enterocolitis. Pediatr Pathol 1994; 14: 1017–28.
   PubMed Web of Science ®Google Scholar
• Berends BR, Urlings HA, Snijders JM, Van Knapen F. Identification and quantification of risk factors in animal management and transport regarding Salmonella spp. in pigs. Int J Food Microbiol 1996; 30: 37–53.
   Google Scholar
• Nagy B, Arp LH, Moon HW, Casey TA. Colonisation of the small intestine of weaned pigs by enterotoxigenic - cherichia coli that lack known colonization factors. Vet Pathol 1992a; 29: 239–46.
   Web of Science ®Google Scholar
• Nagy B, Casey A, Whipp SC, Moon HW. Susceptibility of porcine intestine to pilus mediated adhesion by some isolates of piliated enterotoxigenic Ercherichia coli increases with age. Infect Immun 1992b; 60: 1285–94.
   PubMed Web of Science ®Google Scholar
• Van der Waaij D, Van der Waaij BD. The colonization resistance of the digestive tract in different animal species and in man; a comparative study. Epidemiol Infect 1990; 105: 237–43.
   PubMed Web of Science ®Google Scholar
• Berchieri A Jr, Barrow PA. Further studies on the inhiition of colonization of the chicken alimentary tract with Salmonella typhimurium by pre-colonization with an aviru-lent mutant. Epidemiol Infect 1990; 104: 427–41.
   Web of Science ®Google Scholar
• Andrutis KA, Fox JG, Schauer DB, Marini RP, Li X, Yan L, Josenhans C, Suerbaum S. Infection of the ferret stomach by isogenic flagellar mutant strains of Helicobacter mustelae. Infect Immun 1997; 65: 1962–6.
   Web of Science ®Google Scholar
• Kubota T, Fujioka T, Nasu M. Helicobacter pylori infection. Rinsho Byori 1998; 46: 623–8.
   Google Scholar
• Catala I, Butel MJ, Bensaada M, Popot F, Tessedre AC, Rimbault A, Szylit O. Oligofructose contributes to the pro-tective role of bifidobacteria in experimental necrotising enterocolitis in quails. J Med Microbiol 1999; 48: 89–94.
   Google Scholar
• Shedlofsky S, Freter R. Synergism between ecologic and immunologic control mechanisms of intestinal flora. J Infect Dis 1974; 129: 296–303.
   PubMed Web of Science ®Google Scholar
• Moberg LJ, Sugiyama H. Microbial ecological basis of infant botulism as studied with germfree mice. Infect Immun 1978; 25: 653–7.
   Web of Science ®Google Scholar
• Wilson KH, Sheagren JN, Freter R, Weatherbee L, Lyerly L. Gnotobiotic models for study of the microbial ecology of Clostridium difficile and Escherichia coli. J Infect Dis 1986; 153: 547–51.
   Google Scholar
• Onderdonk AB, Cisneros RL, Bartlett JG. Clostridium diffi-cile in gnotobiotic mice. Infect Immun 1980; 28: 277–82.
   PubMed Web of Science ®Google Scholar
• Wilson KH, Patel M, Permoad P, Moore L. Ecologic succes-sion-use in development of synthetic microfloras. Microecol Ther 1986; 16: 181–9.
   Google Scholar
• Raibaud P, Ducluzeau R, Dubos R, Hudault S, Bewa H, Muller MC. Implantation of bacteria from the digestive tract of man and various animals in gnotobiotic mice. Am J Clin Nutr 1980; 33: 2440–7.
   PubMed Web of Science ®Google Scholar
• Pecquet S, Guillaumin D, Tancrede C, Andremont A. Kinet-ics of Saccharomyces cerevisiae elimination from the intes-tines of human volunteers and effect of this yeast on resistance to microbial colonization in gnotobiotic mice. Appl Environ Microbiol 1991; 57: 3049–51.
   Web of Science ®Google Scholar
• Bry L, Falk PG, Midvedt T, Gordon JI. A model of host-microbial interactions in an open mammalian ecosys-tem. Science 1996; 273: 1380–3.
   PubMed Web of Science ®Google Scholar
• Hooper LV, Bry L, Falk PG, Gordon JI. Host-micobial symbiosis in the mammalian intestine: exploring an internal ecosystem. Bioessays 1998; 20: 336–43.
   PubMed Web of Science ®Google Scholar
• Hultgren SJ, Abraham S, Caparon M, Falk P, St. Geme JW, Normak S. Pilus and nonpilus bacterial adhesins: assembly and function in cell regocnition. Cell 1993; 73: 887–901.
   Google Scholar
• Salyers AA, Pajeau M. Competitiveness of different polysac-charides utilization mutants of Bacteroides thetaiotaomicron in the intestinal tracts of germfree mice. Appl Environ Microbiol 1989; 55: 2572–8.
   Web of Science ®Google Scholar
• Falk PG, Hooper LV, Midtvedt T, Gordon JI. Creating and maintaining the gastrointestinal ecosystem: What we know and need to know from gnotobiology. Microbiol Mol Biol Rev 1998; 62: 1157–70.
   PubMed Web of Science ®Google Scholar
• Nurmi E, Rantala M. New aspects of Salmonella infection in broiler production. Nature 1973; 241: 210–1.
   PubMed Web of Science ®Google Scholar
• Mead GC, Barrow PA, Hinton MH, Humbert F, Impey CS, Lahellec C, Mulder RW, Stavric S, Stern NJ. Recommended assay for treatment of chicks to prevent Salmonella coloniza-tion by 'competitive exclusion'. J Food Prot 1989; 52: 500–2.
   Google Scholar
• Nurmi E, Nuotio L, Schneitz C. The competitive exclusion concept: development and future. Int J Food Microbiol 1992; 15: 237–40.
   Google Scholar
• Hakkinen M, Schneitz C. Efficacy of a commercial competi-tive exclusion product against chicken pathogenic Es-cherichia coli and E. coli 0157:H7. Vet Rec 1996; 139: 139–41.
   Google Scholar
• Nisbet DJ. Use of competitive exclusion in food animals. J Am Vet Med Assoc 1998; 213: 1744–6.
   PubMed Web of Science ®Google Scholar
• Soerjadi AS, Stehman SM, Snoeyenbos GH, Weinack OM, Smyser CF. The influence of Lactobacilli on the competitive exclusion of paratyphoid Salmonellae in chickens. Avian Dis 1981; 25: 1027–33.
   Google Scholar
• Stavric S. Defined cultures and prospects. Int J Food Micro-biol 1992; 15: 245–63.
   PubMed Web of Science ®Google Scholar
• Impey CS, Mead GC, George SM. Competitive exclusion of salmonella from the chick caecum using a defined mixture of bacterial isolates from the caecal microflora of an adult bird. J Hygiene 1982; 89: 479–90.
   Google Scholar
• Syet SA, Abrams GD, Freter R. Efficiency of various intesti-nal bacteria in assuming normal function of enteric flora after association with germ-free mice. Infect Immun 1970; 2: 376–86.
   Google Scholar
• Wilson KH, Moore L, Patel M, Pemoad P. Suppression of potential pathogens by a defined colonic microflora. Microb Ecol Health Dis 1988; 1: 237–43.
   Google Scholar
• Ducluzeau R, Ladire M, Callut C, Raibaud P, Abrams GD. Antagonistic effect of extremely oxygen-sensitive clostridia from the microflora of conventional mice and of Escherichia coli against Shigella flexneri in the digestive tract of gnotobi-otic mice. Infect Immun 1977; 17: 415–24.
   Google Scholar
• De Macias ME, Apella MC, Romero NC, Gonzalez SN, Oliver G. Inhibition of Shigella sonnei by Lactobacillus casei and Lactobacillus acidophilus. J Appl Bacteriol 1992; 73: 407–11.
   Google Scholar
• Hudault S, Lievin V, Bernet-Carmad MF, Servin AL. An-tagonistic activity exerted in vitro and in vivo by Lactobacil-lus casei (strain GG) against Salmonella typhimurium C5 infection. Appl Environ Microbiol 1997; 63: 513–8.
   Google Scholar
• Kabir AM, Aiba Y, Takagi A, Kamiya S, Miwa T, Koga Y. Prevention of Helicobacter pylori infection by lactobacilli in a gnotobiotic murine model. Gut 1997; 41: 49–55.
   PubMed Web of Science ®Google Scholar
• Rodrigues AC, Nardi RM, Bambirra EA, Vieira EC, Nicoli JR. Effect of Saccharomyces boulardii against experimental oral infection with Salmonella typhimurium and Shigella flexneri in conventional and gnotobiotic mice. J Appl Bacte-riol 1996; 81: 251–6.
   Google Scholar
• Hazenberg MP, Bakker M, Verschoor-Burggraaf A. Effects of human intestinal microflora on germ-free mice. J Appl Bacteriol 1981; 50: 95.
   Google Scholar
• Mallet AK, Beame CA, Rowland IR, et al. The use of rats associated with a human faecal flora as a model for studying the effects of diet on the human gut microflora. J Appl Bacteriol 1987; 63: 39.
   Google Scholar
• Freter R, Staufer E, Cleven D, Holdeman LV, Moore WEC. Continuous-flow cultures as in vitro models of the ecology of the large intestinal flora. Infect Immun 1983a; 39: 666–75.
   Google Scholar
• Freter R, Brickner H, Botney M, Cleven D, Aranki A. Mechanisms that control bacterial populations in continu-ous-flow models of mouse large intestinal flora. Infect Im-mun 1983; 39: 676–85.
   Google Scholar
• Edwards CA, Duerden BI, Read NW. The effects of pH on colonic bacteria grown in continuous culture. J Med Micro-biol 1985; 19: 169–80.
   Google Scholar
• Mallet AK, Rowland IR, Beame CA, Purchase R, Gangolli SD. Metabolic adaptation of rat faecal microflora to cycla-mate in vitro. Food Chem Toxicol 1985; 23: 1029–34.
   Google Scholar
• Wilson KH, Freter R. Interaction of Clostridium difficile and Escherichia coli with microfloras in continuous-flow cultures and gnotobiotic mice. Infect Immun 1986; 54: 354–8.
   PubMed Web of Science ®Google Scholar
• Kennedy MJ, Rogers AL, Yancey RJ Jr. An anaerobic continuous-flow culture model of the interactions between intestinal microflora and Candida albicans. Mycopathologia 1988; 103: 125–34.
   Google Scholar
• Wilson KH, Perini F. Role of competition for nutrients in suppression of Clostridium difficile by the colonic microflora. Infect Immun 1988; 56: 2610–4.
   PubMed Web of Science ®Google Scholar
• Bernhardt H, Knoke M. Recent studies on the microbial ecology of the upper gastrointestinal tract. Infection 1989; 17: 259–63.
   PubMed Web of Science ®Google Scholar
• Nisbet DJ, Corner DE, DeLoach JR Effect of mixed cecal microflora maintained in continuous culture and of dietary lactose on Salmonella typhimurium colonization in broiler chicks. Avian Dis 1993; 37: 528–35.
   PubMed Web of Science ®Google Scholar
• Bernhardt H, Wellmer A, Zimmermann K, Knoke M. Growth of Candida albicans in normal and altered faecal flora in the model of continuous flow culture. Mycoses 1995; 38: 265–70.
   PubMed Web of Science ®Google Scholar
• Bernhardt H, Knoke M. Mycological aspects of the gas-trointestinal microflora. Scand J Gastroenterol Suppl 1997; 222: 102–6.
   PubMedGoogle Scholar
• Gerritse J, Schut F, Gottschal JC. Modelling of mixed chemostat cultures of an aerobic bacterium Comamonas testosteroni, and an anaerobic bacterium Veillonella alcales-cens: comparison with experimental data. Appl Environm Microbiol 1992; 58: 1466–76.
   Google Scholar
• Coleman ME, Dreesen DW, Wiegert RG. A simulation of microbial competition in the human colonic ecosystem. Appl Environm Microbiol 1996; 62: 3632–9.
   PubMedGoogle Scholar
• Koch AL, Robinson JA, and Milliken GA. Mathematical Modelling in Microbial Ecology 1998. Chapman & Hall, New York.
   Google Scholar
• Nuotio L, Mead GC. An in vitro model for studies on bacterial interactions in the avian caecum. Lett Appl Micro-biol 1993; 17: 65–7.
   Web of Science ®Google Scholar
• Itoh K, Freter R. Control of Escherichia coli populations by a combination of indigenous clostridia and lactobacilli in gnotobiotic mice and continuous-flow cultures. Infect Im-mun 1989; 57: 559–65.
   Web of Science ®Google Scholar
• Gibson GR, Wang X. Enrichment of bifidobacteria from human gut contents by oligofructose using continouos cul-ture. FEMS Microbiol Lett 1994; 118: 121–7.
   PubMed Web of Science ®Google Scholar
• Nonet L, Vande Velde I, and Verstraete. Effect of the addition of Peptostreptococcus product us ATCC35244 on the gastro-intestinal microbiota and its activity, as simulated in an in vitro simulator of the human gastro-intestinal tract. Appl Microbiol Biotechnol 1997; 48: 99–104.
   Google Scholar
• Kontula P, Jaskari J, Nonet L, De Smet I, von Wright A, Poutanen K, Mattila-Sandholm T. The colonization of a simulator of the human intestinal microbial ecosystem by a probiotic strain fed on a fermented oat bran product: effects on the gastrointestinal microbiota. Appl Microbiol Biotech-nol 1998; 50: 246–52.
   Google Scholar
• Alander M, De Smet I, Nonet L, Verstraete W, von Wright A, Mattila-Sandholm T. The effect of probiotic strains on the microbiota of the simulator of the human intestinal microbial ecosystem (SHIME). Int J Food Microbiol 1999; 46: 71–9.
   PubMed Web of Science ®Google Scholar
• Minekus M, Marteau P, Havenaar R, Huis in't Veld JHJ. A multicompartmental dynamic computer-controlled model simulating the stomach and small intestine. ATLA 1995; 23: 197–209.
   Google Scholar
• Asplund K, Hakkinen M, Bjorkroth J, Nuotio L, Nurmi E. Note: inhibition of the growth of Yersinia enterocolitica 0:3 by the microflora of porcine caecum and ileum in an in vitro model. J Appl Bacteriol 1996; 81: 217–22.
   Google Scholar
• Marteau P, Minekus M, Havenaar R, Huis in't Veld JH. Survival of lactic acid bacteria in a dynamical model of the stomach and the small intestine: validation and the effect of bile. J Dairy Sci 1997; 80: 1031–7.
   Google Scholar
• Ganzle MG, Hertel C, van der Vossen JM, Hammes WP. Effect of bacteriocin producing lactobacilli on the survival of Escherichia coli and Listeria in a dynamic model of the stomach and the small intestine. Int J Food Microbiol 1999; 48: 21–35.
   Google Scholar
• Knutton S, Lloyd DR, Candy DC, McNeish AS. In vitro adhesion of enterotoxigenic Escherichia coli to human intes-tinal epithelial cells from mucosal biopsies. Infect Immun 1984; 44: 514–8.
   PubMed Web of Science ®Google Scholar
• Bertshinger HU, Bachmann M, Mettler C, Pospischil A, Schraner EM, Stamm M, Sydler T, Wild P. Adhesive fimbriae produced in vivo by Ercherichia coli 0139:K12(B):H1 associated with enterotoxaemia in pigs. Vet Microbiol 1990; 25: 267–81.
   Web of Science ®Google Scholar
• Favennec L, Chochillon C, Meillet D, Magne D, Savel J, Raichvarg D, Gobert JG. Adherence and multiplication of Giardia intestinalis on human enterocyte-like differentiated cells in vitro. Parasitol Res 1990; 76: 581–4.
   Google Scholar
• Magne D, Favennec L, Chochillon C, Gorenflot A, Meillet D, Kapel N, Raichvarg D, Savel J, Gobert JG. Role of cytoskeleton and surface lectins in Giardia duodenalis attach-ment to Caco-2 cells. Parasitol Res 1991; 77: 659–62.
   Google Scholar
• Coconnier MH, Bernet MF, Chauviere G, Servin AL. Ad-hering heat-killed Lactobacillus acidophilus, strain LB, in-hibits the process of pathogenicity of diarrhoeagenic bacteria in cultured human intestinal cells. J Diarrhoeal Dis Res 1993; 11: 235–42.
   PubMedGoogle Scholar
• Crociani J, Grill JP, Huppert M, Ballongue J. Adhesion of different bifidobacteria strains to human enterocyte-like Caco-2 cells and comparison with in vivo study. Lett Appl Microbiol 1995; 21: 146–8.
   PubMed Web of Science ®Google Scholar
• Bernet-Camard MF, Liévin V, Brassart D, Neeser JR, Servin AL, Hudault S. The human Lactobacillus acidophilus strain LA1 secretes a nonbacteriocin antibacterial sub-stance(s) active in vitro and in vivo. Appl Environm Micro-biol 1997; 63: 2747–53.
   PubMed Web of Science ®Google Scholar
• Ouwehand AC, Niemi P, Salminen SJ. The normal faecal microflora does not affect the adhesion of probiotic bacteria in vitro. FEMS Microbiol Lett 1999; 177: 35–8.
   Google Scholar
• Wells CL, van de Westerlo EM, Jechorek RP, Erlandsen SL. Exposure of the lateral enterocyte membrane by dissociation of calcium-dependent junctional complex augments endocy-tosis of enteric bacteria. Shock 1995; 4: 204–10.
   Web of Science ®Google Scholar
• Wells CL, van de Westerlo EM, Jechorek RP, Erlandsen SL. Intracellular survival of enteric bacteria in cultured human enterocytes. Shock 1996; 6: 27–34.
   Web of Science ®Google Scholar
• Wells CL, van de Westerlo EM, Jechorek RP, Erlandsen SL. Effect of hypoxia on enterocyte endocytosis of enteric bacte-ria. Crit Care Med 1996; 24: 985–91.
   Web of Science ®Google Scholar
• Xu DZ, Lu Q, Kubicka R, Deitch EA. The effect of hypoxia/reoxygenation on the cellular function of intestinal epithelial cells. J Trauma 1999; 46: 280–5.
   PubMedGoogle Scholar
• Xu DZ, Lu Q, Swank GM, Deitch EA. Effect of heat shock and enterotoxin stress on enterocyte viability, apoptosis and function varies based on whether the cells are exposed to heat shock or endotoxin first. Arch Surg 1996; 131: 1222–8.
   Google Scholar
• Hu ZL, Hasler-Rapacz J, Huang SC, Rapacz J. Studies in swine on inheritance and variation in expression of small intestinal receptors mediating adhesion of the K88 en-teropathogenic Escherichia coli variants. J Hered 1993; 84: 157–65.
   Web of Science ®Google Scholar
• Vogeli P, Bertschinger HU, Stamm M, Stricker C, Hagger C, Fries R, Rapacz J, Stranzinger G. Genes specifying receptors for F18 fimbriated Escherichia coli, causing diarrhoea in pigs, map to chromosome 6. Anim Genet 1996; 27: 321–8.
   PubMed Web of Science ®Google Scholar
• Lucas F, Elmer GW, Brot-Laroche E, Corthier G. Fixation of Clostridium difficile toxin A and cholera toxin to intestinal brush border membranes from axenic and conventional mice. Infect Immun 1989; 57: 1680–3.
   Google Scholar
• Freter R, Brickner H, Fekete J, Vickerman MM, Carey KY. Survival and implantation of Escherichia coli in the intestinal tract. Infect Immun 1983c; 39: 686–703.
   PubMed Web of Science ®Google Scholar
• Wilkinson MHF. Nonlinear dynamics, chaos-theory, and the 'sciences of complexity': their relevance to the study of the interaction between host and microflora. 1997; In: 'Old Herbom University Monograph Vol. 10: New Antimicrobial Strategies' (Heidt P.J., V. Rusch V., and Van der Waaij D., eds.), pp. 111–130, Herbom Litterae, Herbom-Dill, Germany.
   Google Scholar
• Koch AL. Multistep kinetics: choice of models for growth of bacteria. J Theor Biol 1982; 98: 401–17.
   PubMed Web of Science ®Google Scholar
• Koch AL. Microbial physiology and ecology of slow growth. Microbiol Molec Biol Rev 1997; 61: 305–18.
   PubMed Web of Science ®Google Scholar
• Grover JP. Dynamics of competition in a variable environ-ment: experiments with two diatom species. Ecology 1988; 69: 408–17.
   Web of Science ®Google Scholar
• Grover JP. Resource competition in a variable environment: phytoplankton growing according to Monod's model. Am Nat 1990; 136: 771–89.
   Web of Science ®Google Scholar
• Gottschal JC. Growth kinetics and competition- some con-temporary comments. Antonie van Leeuwenhoek 1993; 63: 299–313.
   Web of Science ®Google Scholar
• Blackman FF. Optima and limiting factors. Ann Bot 1905; 19: 281–95.
   Google Scholar
• Button DK. Biochemical basis for whole-cell uptake kinetics: specific affinity, oligotrophic capacity, and the meaning of the Michaelis-Menten constant. Appl Environm Microbiol 1991; 57: 2033–8.
   PubMed Web of Science ®Google Scholar
• Button DK. Nutrient-limited microbial growth kinetics: overview of recent advances. Antonie van Leeuwenhoek 1993; 63: 225–35.
   PubMed Web of Science ®Google Scholar
• McKay IC, Speekenbrink A. Implications of Freter's model of bacterial colonization. Infect Immun 1984; 44: 199–203.
   Web of Science ®Google Scholar
• Babloyantz A. Molecules, Dynamics and Life: An Introduc-tion to Self-Organization of Matter. Wiley, New York. 1986
   Google Scholar
• Presser KA, Ratkowsky DA, Ross T. Modelling the growth rate of Escherichia coli as a function of pH and lactic acid concentration. Appl Environ Microbiol 1997; 63: 2355–60.
   Google Scholar
• Tan Y, Wang Z-X, Marshall KC. Modeling substrate inhibi-tion of microbial growth. Biotech Bioeng 1996; 52: 602–8.
   PubMed Web of Science ®Google Scholar
• Frank SA. Spatial polymorphism of bacteriocines and other allelopathic traits. Evol Ecol 1994; 8: 369–86.
   Web of Science ®Google Scholar
• Kirschner DE, Blaser MJ. The dynamics of Helicobacter pylori infection in the human stomach. J Theor Biol 1995; 176: 281–90.
   PubMed Web of Science ®Google Scholar
• Kawasaki K, Mochizuki A, Matsushita M, Umeda T, Shige-sada N. Modelling spatio-temporal patterns generated by Bacillus subtilis. J Theor Biol 1997; 188: 177–85.
   Google Scholar
• Gray KM. Extracellular communication and group be-haviour in bacteria. Trends Microbiol 1997; 5: 184–8.
   PubMed Web of Science ®Google Scholar
• Sieburg HB, McCutchan JA, Clay O, Caballero L, OstLund JJ. Simulation of HIV-infection in artificial immune system. Physica D 1990; 45: 208–28.
   Google Scholar