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Molecular Simulation Volume 28, 2002 - Issue 8-9
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Original Articles

Comparison of the transmembrane helices of bovine rhodopsin in the crystal structure and the C α template based on cryo-electron microscopy maps and sequence analysis of the G protein-coupled receptors

Siavoush Dastmalchi Faculty of Pharmacy, The University of Sydney, Sydney, NSW, 2006, Australia
,
Felix J. Kobus Faculty of Pharmacy, The University of Sydney, Sydney, NSW, 2006, Australia
,
Tiina P. Iismaa Neurobiology Program, The Garvan Institute of Medical Research, 384 Victoria Street, Sydney, NSW, 2010, Australia
,
Michael B. Morris Faculty of Pharmacy, The University of Sydney, Sydney, NSW, 2006, Australia
&
W. Bret Church Neurobiology Program, The Garvan Institute of Medical Research, 384 Victoria Street, Sydney, NSW, 2010, Australia
Pages 845-851 | Published online: 26 Oct 2010

References

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  • Palczewski , K. , Kumasaka , T. , Hori , T. , Behnke , C.A. , Motoshima , H. , Fox , B.A. , Trong , I.L. , Teller , D.C. , Okada , T. , Stenkamp , R.E. , Yamamoto , M. and Miyano , M. 2000 . "Crystal structure of rhodopsins: a G protein-coupled receptor" . Science , 289 : 739 – 745 .
  • Unger , V.M. , Hargrave , P.A. , Baldwin , J.M. and Schertler , G.F. 1997 . "Arrangement of rhodopsin transmembrane alpha-helices" . Nature , 389 : 203 – 206 .
  • Baldwin , J.M. , Schertler , G.F.X. and Unger , V.M. 1997 . "An alpha-carbon template for the transmembrane helices in the rhodopsin family of G-protein-coupled receptors" . J. Mol. Biol. , 272 : 144 – 164 .
  • Berman , H.M. , Westbrook , J. , Feng , Z. , Gililand , G. , Bahat , T.N. , Weissig , H. and Shindyalov , P.E. 2000 . "The protein data bank" . Nucleic Acids Res. , 28 : 235 – 242 .
  • Abagyan , R. and Totrov , M.M. 1997 . "Contact area difference (CAD): A robust measure to evaluate accuracy of protein models" . J. Mol. Biol. , 268 : 678 – 685 .
  • Kabsch , W. and Sander , C. 1983 . "Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features" . Biopolymers , 22 : 2577 – 2637 .
  • Kraulis , P.J. 1991 . "molscript : a program to produce both detailed and schematic plots of protein structures" . J. Appl. Cryst. , 24 : 946 – 950 .

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