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Original Articles

DNA force-extension curve under uniaxial stretching

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Pages 221-228 | Received 28 Oct 2008, Accepted 18 Jul 2009, Published online: 27 Aug 2009

References

  • Saenger , W. 1984 . Principles of Nucleic Acid Structure , New York : Springer-Verlag .
  • Alberts , B. , Bray , D. , Lewis , J. , Raff , M. , Roberts , K. and Watson , J.D. 1994 . The Molecular Biology of the Cell , New York : Garland .
  • Widom , J. 2001 . Role of DNA sequence in nucleosome stability and dynamics . Q. Rev. Biophys. , 34 : 269 – 324 .
  • Zhou , H. , Zhang , Y. and Ou-Yang , Z. 2000 . Elastic property of single double-stranded DNA molecules: Theoretical study and comparison with experiments . Phys. Rev. E , 62 : 1045 – 1058 .
  • Turner , S.W. , Cabodi , M. and Craighead , H.G. 2002 . Confinement-induced entropic recoil of single DNA molecules in a nanofluidic structure . Phys. Rev. Lett. , 88 : 128103.1 – 128103.4 .
  • Gosse , C. and Croquette , V. 2002 . Magnetic tweezers: Micromanipulation and force measurement at the molecular level . Biophys. J. , 82 : 3314 – 3329 .
  • Allemand , J. , Bensimon , D. , Jullien , L. , Bensimon , A. and Croquette , V. 1997 . pH-dependent specific binding and combing of DNA . Biophys. J. , 73 : 2064 – 2070 .
  • Bakajin , O. , Duke , T. , Chou , C. , Chan , S. , Austin , R. and Cox , E. 1998 . Electrohydrodynamic stretching of DNA in confined environments . Phys. Rev. Lett. , 80 : 2737 – 2740 .
  • Bensimon , D. , Simon , A.J. , Croquette , V. and Bensimon , A. 1995 . Stretching DNA with a receding meniscus: Experiments and models . Phys. Rev. Lett. , 74 : 4754 – 4757 .
  • Smith , S.B. , Finci , L. and Bustamante , C. 1992 . Direct mechanical measurements of the elasticity of single DNA molecules by using magnetic beads . Science , 258 : 1122 – 1126 .
  • Marko , J.F. and Siggia , E.D. 1995 . Stretching DNA . Macromolecules , 28 : 8759 – 8770 .
  • Wiggins , P.A. and Nelson , P.C. 2006 . Generalized theory of semiflexible polymers . Phys. Rev. E , 73 : 031906.1 – 031906.13 .
  • Wiggins , P.A. , Heijden , T.V. , Herrero , F.M. , Spakowitz , A. , Phillips , R. , Widom , J. , Dekker , C. and Nelson , P.C. 2006 . High flexibility of DNA on short length scales probed by atomic force microscopy . Nature Nanotechnol. , 1 : 137 – 141 .
  • Smith , S.B. , Cui , Y. and Bustamante , C. 1996 . Overstretching B-DNA: The elastic response of individual double-stranded and single-stranded dNA molecules . Science , 271 : 795 – 799 .
  • Leger , J.F. , Romano , G. , Sarkar , A. , Robert , J. , Bourdieu , L. , Chatenay , D. and Marko , J.F. 1999 . Structural transitions of a twisted and stretched DNA molecule . Phys. Rev. Lett. , 83 : 1066 – 1069 .
  • Benham , C.J. 1989 . Onset of writhing in circular elastic polymers . Phys. Rev. A , 39 : 2582 – 2586 .
  • Sarkar , A. , Leger , J.F. , Chatenay , D. and Marko , J.F. 2001 . Structural transitions in DNA driven by external force and torque . Phys. Rev. E , 63 : 051903.1 – 051903.10 .
  • Chiang , K.N. , Yuan , C.A. , Han , C.N. and Chou , C.Y. 2006 . Mechanical characteristic of ss-DNA/ds-DNA molecule under external loading . Appl. Phys. Lett. , 88 : 023902.1 – 023902.3 .
  • Keten , S. and Buehler , M.J. 2008 . Strength limit of entropic elasticity in beta-sheet protein domains . Phys. Rev. E , 78 : 061913.1 – 061913.7 .
  • Marszalek , P.E. , Lu , H. , Li , H.B. , Vazquez , M.C. , Oberhauser , A.F. , Schulten , K. and Fernandez , J.M. 1999 . Mechanical unfolding intermediates in titin modules . Nature , 402 : 100 – 103 .
  • Bell , G.I. 1978 . Models for the specific adhesion of cells to cells . Science , 200 : 618 – 627 .
  • Ackbarow , T. , Chen , X. , Keten , S. and Buehler , M.J. 2007 . Hierarchies, multiple energy barriers, and robustness govern the fracture mechanics of α-helical and β-sheet protein domains, Proc . Natl Acad. Sci. USA , 104 : 16410 – 16415 .
  • Evans , E. and Ritchie , K. 1997 . Dynamic strength of molecular adhesion bonds . Biophys. J. , 72 : 1541 – 1555 .
  • Merkel , R. , Nassoy , P. , Leung , A. , Ritchie , K. and Evans , E. 1999 . Energy landscapes of receptor–ligand bonds explored with dynamic force spectroscopy . Nature , 397 : 50 – 53 .
  • Rief , M. , Fernandez , J.M. and Gaub , H.E. 1998 . Elastically coupled two-level systems as a model for biopolymer extensibility . Phys. Rev. Lett. , 81 : 4764 – 4767 .
  • Watson , J.D. , Hopkins , N.H. , Roberts , J.W. , Steitz , J.A. and Weiner , A.M. 1987 . Molecular Biology of the Gene , 4th ed. , Menlo Park, CA : Benjamin/Cummings .
  • Storm , C. and Nelson , P.C. 2003 . Theory of high-force DNA stretching and overstretching . Phys. Rev. E , 67 : 051906.1 – 051906.12 .
  • Jeffery , G.A. and Saneger , W. 1994 . Hydrogen Bonding in Biological Structures , 1st ed. , Berlin : Springer .
  • Ansel , A.C. and Fenster , S.K. 2003 . Strength and Applied Elasticity , 4th ed. , Upper Saddle River, NJ : Prentice-Hall .
  • Mayo , S.L. , Olafson , B.D. and Goddard , W.A. 1990 . DREIDING: A generic force field for molecular simulations . J. Phys. Chem. , 94 : 8897 – 8909 .
  • Brooks , B.R. , Bruccoleri , R.E. , Olafson , B.D. , States , D.J. , Swaminathan , S. and Karplus , M.J. 1983 . CHARMM: A program for macromolecular energy, minimization, and dynamics calculations . Comput. Chem. , 4 : 187 – 217 .
  • Wachter , R.M. and Branchaud , B.P. 1996 . Molecular modeling studies on oxidation of hexopyranoses by galactose oxidase. An active site topology apparently designed to catalyze radical reactions, either concerted or stepwise . J. Am. Chem. Soc. , 118 : 2782 – 2789 .
  • Lebrun , A. and Lavery , R. 1996 . Modelling extreme stretching of DNA . Nucleic Acids Res. , 24 : 2260 – 2267 .
  • Wilkins , M. , Gosling , R. and Seeds , W. 1951 . Physical studies of nucleic acid: Nucleic acid: An extensible molecule? . Nature , 167 : 759 – 760 .
  • Bensimon , A. , Simon , A. , Chiffaudel , A. , Croquette , V. , Heslot , F. and Bensimon , D. 1994 . Alignment and sensitive detection of DNA by a moving interface . Science , 265 : 2096 – 2098 .

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