References
- Voet D, Voet JG. Biochemistry. 2nd ed. New York: Wiley-Interscience; 1995.
- Matsumoto Y, Iwamoto Y, Matsushita T, Ueoka R. Novel mechanism of hybrid liposomes-induced apoptosis in human tumor cells. Int J Cancer. 2005;115:377–382.
- Ueoka R, Matsumoto Y, Goto K, Ichihara H, Komizu Y. Membrane targeted chemotherapy with hybrid liposomes for tumor cells leading to apoptosi. Curr Pharm Des. 2011;17:1709–1719.
- Thurmond RL, Otten D, Brown MF, Beyer K. Structure and packing of phosphatidylcholines in lamellar and hexagonal liquid-crystalline mixtures with a nonionic detergent; a wide-line deuterium and phosphorus-31 NMR study. J Phys Chem. 1994;98:972–983.
- Otten D, Lobbecke L, Beyer K. Stages of the bilayer-micelle transition in the system phosphatidylcholine–C12E8 as studied by deuterium- and phosphorus-NMR, light scattering, and calorimetry. Biophys J. 1995;68:584–597.
- Otten D, Brown MF, Beyer K. Softening of membrane bilayers by detergents elucidated by deuterium NMR spectroscopy. J Phys Chem B. 2000;104:12119–12129.
- Nagle JF, Petrache HI, Gouliaev N, Tristram-Nagle S, Liu Y, Suter RM, Gawrisch K. Multiple mechanisms for critical behavior in the biologically relevant phase of lecithin bilayers. Phys Rev E. 1998;58:7769–7776.
- Nagle JF, Tristram-Nagle S. Structure of lipid bilayers. Biochim Biophys Acta. 2000;1469:159–195.
- Kucerka N, Nieh MP, Katsaras J. Fluid phase lipid areas and bilayer thickness of commonly used phosphatidylcholines as a function of temperature. Biochim Biophys Acta. 2011;1808:2761–2771.
- Klauda JB, Venable RM, Freites JA, O'Connor JW, Tobias DJ, Ramirez CM, Vorobyov I, MacKerell AD Jr, Pastor RW. Update of the CHARMM all-atom additive force field for lipids: validation on six lipid types. J Phys Chem B. 2010;114:7830–7843.
- Vorobyov I, Anisimov VM, Greene S, Venable RM, Moser A, Pastor RW, MacKerell AD Jr. Additive and classical drude polarizable force fields for linear and cyclic ethers. J Chem Theory Comput. 2007;3:1120–1133.
- Lee H, Venable RM, MacKerell AD Jr, Pastor RW. Molecular dynamics studies of polyethylene oxide and polyethylene glycol: hydrodynamic radius and shape anisotropy. Biophys J. 2008;95:1590–1599.
- Durell SR, Brooks BR, Ben-Naim A. Solvent induced forces between two hydrophilic groups. J Phys Chem. 1994;98:2198–2202.
- Essmann U, Perera L, Berkowitz ML, Darden T, Lee H, Pedersen LG, smooth A. particle mesh Ewald method. J Chem Phys. 1995;103:8577–8593.
- Nosé S. A molecular dynamics method for simulations in the canonical ensemble. Mol Phys. 1984;52:255–268.
- Hoover WG. Canonical dynamics: equilibrium phase-space distribution. Phys Rev A. 1985;31:1695–1697.
- Martyna GJ, Tuckerman ME, Klein ML. Nosé–Hoover chains: the canonical ensemble via continuous dynamics. J Chem Phys. 1992;97:1990–2001.
- Parrinello M, Rahman A. Crystal structure and pair potentials: a molecular dynamics study. Phys Rev Lett. 1980;45:1196–1199.
- Tuckerman M, Berne BJ. Reversible multiple time scale molecular dynamics. J Chem Phys. 1992;97:1990–2001.
- Martyna GJ, Tuckerman ME, Tobias DJ, Klein ML. Explicit reversible integrators for extended systems dynamics. Mol Phys. 1996;87:1117–1157.
- Andoh Y, Yoshii N, Fujimoto K, Mizutani K, Kojima H, Yamada A, Okazaki S, Kawaguchi K, Nagao H, Iwahashi K, Mizutani F, Minami K, Ichikawa S, Komatsu H, Ishizuki S, Takeda Y, Fukushima M. MODYLAS: A highly parallelized general-purpose molecular dynamics simulation program for large-scale systems with long range forces calculated by fast multipole method (FMM) and highly scalable fine-grained new parallel processing algorithms. J Chem Theor Comput. 2013;9:3201–3209.
- Rawicz W, Olbrich KC, McIntosh T, Needham D, Evans E. Effect of chain length and unsaturation on elasticity of lipid bilayers. Biophys J. 2000;79:328–339.
- Leftin A, Brown MF. An NMR database for simulations of membrane dynamics. Biochim Biophys Acta. 2011;1808:818–839.