Research Articles Published with IBS Students
- Chang YT, Mues G, Hyland K. Alternative splicing in the coding region of human aromatic L-amino acid decarboxylase mRNA. Neurosci Lett 1996;202 (3): 157–160.
- Helleck AM, Hartberg WK, Vodopich D. Fecundity, fertility, and developmental stage survivorship of Eretmapodites quinquevittatus. J Am Mosq Control Assoc 1996;12 (1): 137–141.
- Carmack G, Budries K. Connecting the biology classroom to the cyberworld: problems and solutions. National Consortium of Specialized Secondary Schools in Mathematics Journal 1997;3 (1): 15–17.
- Chang YT, Hyland K, Mues G, Marsh JL. Human hair follicles as a peripheral source of tyrosine hydroxylase and aromatic L-amino acid decarboxylase mRNA. Neurosci Lett 1997;222 (3): 210–212.
- Helleck AM, Hartberg WK, Baldridge RS. Photosensitization of Eretmapodites quinquevittatus Theobald (Diptera: Culicidae) eggs and larvae with Photofrin II. J Am Mosq Control Assoc 1997;13 (3): 292–295.
- Hyland K, Fryburg JS, Wilson WG, Bebin EM, Arnold LA, Gunasekera RS, Jacobson RD, Rost-Ruffner E, Trugman JM. Oral phenylalanine loading in dopa-responsive dystonia: a possible diagnostic test. Neurology 1997;48 (5): 1290–1297.
- Yang BZ, Ding JH, Dewese T, Roe D, He G, Wilkinson J, Day DW, Demaugre F, Rabier D, Brivet M, Roe C. Identification of four novel mutations in patients with carnitine palmitoyltransferase II (CPT II) deficiency. Mol Genet Metab 1998;64 (4): 229–236.
- He G, Yang BZ, Roe DS, Teramoto R, Aleck K, Grebe TA, Roe CR, Ding JH. Identification of two novel mutations in the hypoglycemic phenotype of very long chain acyl-CoA dehydrogenase deficiency. Biochem Biophys Res Commun 1999;264 (2): 483–487.
- Helleck AM, Hartberg WK. Site of Photofrin II photosensitization in larvae of Eretmapodites quinquevittatus Theobald. J Am Mosq Control Assoc 1999;15 (4): 437–445.
- Adair TL, Kearney CM. Recombination between a 3-kilobase tobacco mosaic virus transgene and a homologous viral construct in the restoration of viral and nonviral genes. Arch Virol 2000;145 (9): 1867–1883.
- Helleck AM, Hartberg WK. Effects of Photofrin II on adults of Eretmapodites quinquevittatus. J Am Mosq Control Assoc 2000;16 (3): 248–253.
- Bottiglieri T, Parnetti L, Arning E, Ortiz T, Amici S, Lanari A, Gallai V. Plasma total homocysteine levels and the C677T mutation in the methylenetetrahydrofolate reductase (MTHFR) gene: a study in an Italian population with dementia. Mech Ageing Dev 2001;122 (16): 2013–2023.
- Dayal S, Bottiglieri T, Arning E, Maeda N, Malinow MR, Sigmund CD, Heistad DD, Faraci FM, Lentz SR. Endothelial dysfunction and elevation of S-adenosylhomocysteine in cystathionine beta-synthase-deficient mice. Circ Res 2001;88 (11): 1203–1209.
- Gallai V, Caso V, Paciaroni M, Cardaioli G, Arning E, Bottiglieri T, Parnetti L. Mild hyperhomocyst(e)inemia: a possible risk factor for cervical artery dissection. Stroke 2001;32 (3): 714–718.
- Tong AW, Papayoti MH, Netto G, Armstrong DT, Ordonez G, Lawson JM, Stone MJ. Growth-inhibitory effects of CD40 ligand (CD154) and its endogenous expression in human breast cancer. Clin Cancer Res 2001;7 (3): 691–703.
- Yang BZ, Mallory JM, Roe DS, Brivet M, Strobel GD, Jones KM, Ding JH, Roe CR. Carnitine/acylcarnitine translocase deficiency (neonatal phenotype): successful prenatal and postmortem diagnosis associated with a novel mutation in a single family. Mol Genet Metab 2001;73 (1): 64–70.
- Martens GW, Lunney JK, Baker JE, Smith DM. Rapid assignment of swine leukocyte antigen haplotypes in pedigreed herds using a polymerase chain reaction-based assay. Immunogenetics 2003;55 (6): 395–401.
- Dayal S, Arning E, Bottiglieri T, Böger RH, Sigmund CD, Faraci FM, Lentz SR. Cerebral vascular dysfunction mediated by superoxide in hyperhomocysteinemic mice. Stroke 2004;35 (8): 1957–1962.
- Duncan GE, Perri MG, Anton SD, Limacher MC, Martin AD, Lowenthal DT, Arning E, Bottiglieri T, Stacpoole PW. Effects of exercise on emerging and traditional cardiovascular risk factors. Prev Med 2004;39 (5): 894–902.
- Quinn CT, Griener JC, Bottiglieri T, Arning E, Winick NJ. Effects of intra-ventricular methotrexate on folate, adenosine, and homocysteine metabolism in cerebrospinal fluid. J Pediatr Hematol Oncol 2004;26 (6): 386–388.
- Smith DM, Lunney JK, Ho CS, Martens GW, Ando A, Lee JH, Schook L, Renard C, Chardon P. Nomenclature for factors of the swine leukocyte antigen class II system, 2005. Tissue Antigens 2005;66 (6): 623–639.
- Smith DM, Lunney JK, Martens GW, Ando A, Lee JH, Ho CS, Schook L, Renard C, Chardon P. Nomenclature for factors of the SLA class-I system, 2004. Tissue Antigens 2005;65 (2): 136–149.
- Smith DM, Martens GW, Ho CS, Asbury JM. DNA sequence based typing of swine leukocyte antigens in Yucatan miniature pigs. Xenotransplantation 2005;12 (6): 481–488.
- Wehbe H, Kearney CM, Pinney KG. Combretastatin A-4 resistance in H460 human lung carcinoma demonstrates distinctive alterations in beta-tubulin isotype expression. Anticancer Res 2005;25 (6B): 3865–3870.
- Cheng YS, Mues G, Wood D, Ding J. Aromatase expression in normal human oral keratinocytes and oral squamous cell carcinoma. Arch Oral Biol 2006;51 (7): 612–620.
- Diaz-Arrastia R, Moore CB, Arning A, Bottiglieri T. P1-163: C-reactive protein in aging and Alzheimer's disease: correlation with cerebral atrophy and low plasma vitamin B6. Alzheimer's and Dementia 2006;2 (3, Suppl 1): S143.
- Ho CS, Rochelle ES, Martens GW, Schook LB, Smith DM. Characterization of swine leukocyte antigen polymorphism by sequence-based and PCR-SSP methods in Meishan pigs. Immunogenetics 2006;58 (11): 873–882.
- Xu X, Rongali SC, Miles JP, Lee KD, Lee M. pat-4/ILK and unc-112/Mig-2 are required for gonad function in Caenorhabditis elegans. Exp Cell Res 2006;312 (9): 1475–1483.
- Zhang YA, Nemunaitis J, Samuel SK, Chen P, Shen Y, Tong AW. Antitumor activity of an oncolytic adenovirus-delivered oncogene small interfering RNA. Cancer Res 2006;66 (19): 9736–9743.
- Aspord C, Yu CI, Banchereau J, Palucka AK. Humanized mice for the development and testing of human vaccines. Expert Opinion on Drug Discovery 2007;2 (7): 949–960.
- Chen S, Ding J, Yu C, Yang B, Wood DR, Grayburn PA. Reversal of streptozotocin-induced diabetes in rats by gene therapy with betacellulin and pancreatic duodenal homeobox-1. Gene Ther 2007;14 (14): 1102–1110.
- Jay C, Nemunaitis J, Chen P, Fulgham P, Tong AW. miRNA profiling for diagnosis and prognosis of human cancer. DNA Cell Biol 2007;26 (5): 293–300.
- Matsumoto S, Noguchi H, Naziruddin B, Onaca N, Jackson A, Nobuyo H, Teru O, Naoya K, Klintmalm G, Levy M. Improvement of pancreatic islet cell isolation for transplantation. Proc (Bayl Univ Med Cent) 2007;20 (4): 357–362.
- Chaussabel D, Quinn C, Shen J, Patel P, Glaser C, Baldwin N, Stichweh D, Blankenship D, Li L, Munagala I, Bennett L, Allantaz F, Mejias A, Ardura M, Kaizer E, Monnet L, Allman W, Randall H, Johnson D, Lanier A, Punaro M, Wittkowski KM, White P, Fay J, Klintmalm G, Ramilo O, Palucka AK, Banchereau J, Pascual V. A modular analysis framework for blood genomics studies: application to systemic lupus erythematosus. Immunity 2008;29 (1): 150–164.
- Dayoub H, Rodionov R, Lynch C, Cooke JP, Arning E, Bottiglieri T, Lentz SR, Faraci FM. Overexpression of dimethylarginine dimethylaminohydrolase inhibits asymmetric dimethylarginine-induced endothelial dysfunction in the cerebral circulation. Stroke 2008;39 (1): 180–184.
- Jackson A, McWilliams C, Kaizer E, Chaussabel D, Glaser C, Noguchi H, Matsumoto S, Levy MF, Naziruddin B. Gene expression profiling of human pancreatic islets undergoing a simulated process of instant blood-mediated inflammatory reaction. Transplant Proc 2008;40 (2): 430–432.
- Moehnke MH, Midoro-Horiuti T, Goldblum RM, Kearney CM. The expression of a mountain cedar allergen comparing plant-viral apoplastic and yeast expression systems. Biotechnol Lett 2008;30 (7): 1259–1264.
- Noguchi H, Matsumoto S, Kobayashi N, Hayashi S, Iwanaga Y, Nagata H, Jackson A, Naziruddin B, Okitsu T, Levy MF. Effect of JNK inhibitor during islet isolation and transplantation. Transplant Proc 2008;40 (2): 379–381.
- Noguchi H, Matsumoto S, Ueda M, Hayashi S, Kobayashi N, Jackson A, Naziruddin B, Levy MF. Method for isolation of mouse pancreatic stem cells. Transplant Proc 2008;40 (2): 422–423.
PHD Dissertations
- Fuh, William Lih-Jyh. Early gene responses in mechanically loaded bone cells. May 1996. Mentor: J. Lester Matthews.
- Bowser, Todd. Inhibitors of gamma-glutamylamine cyclotransferase. August 1997. Mentor: Mary Lynn Trawick.
- Helleck, Adam Michael. Photosensitization of Eretmapodites quinquevittatus Theobald (Diptera: Culicidae) with Phototrin II. August 1997. Mentor: W. Keith Hartberg.
- Hinson, Debra. Clinical, biochemical, and molecular analysis of mevalonate kinase deficiency. August 1997. Mentor: K. Michael Gibson.
- Xiao, Ming. Rigor cross-bridge conformation in rabbit psoas muscle fluorescence studies. August 1997. Mentor: Julian Borejdo.
- Yang, Yuanfeng. Cross-linking of the G protein of vesicular stomatitis virus during photoinactivation. August 1997. Mentor: Joseph T. Newman.
- Gunasekera, Richard Sobana. Gunasekera pathophysiological mechanisms of dopa-responsive dystonia and a novel regulation of the aromatic amino acid hydroxylases. December 1997. Mentor: Keith Hyland.
- Chang, Yuh-Terng. Biochemical and molecular characterization of inherited defects of tyrosine hydroxylase and aromatic L-amino acid decarboxylase. December 1997. Mentor: Keith Hyland.
- Zhang, Yu An. Growth inhibition of human non-small cell lung cancer cells by anti-K-ras ribozymes. December 1997. Mentor: Alex Tong.
- Seamour, Bryan. Effect of autocritic interleukin-6 on human myeloma cells. December 1998. Mentor: Alex Tong.
- Adair, Tamarah. Tobacco mosaic virus: a molecular tool for the production of recombinant proteins and the analysis of RNA recombination. December 1998. Mentor: Christopher Kearney.
- Cheng, Yi-Shing. Cross-linking of collagen by naphthalimide. May 1999. Mentor: J. Lester Matthews.
- He, Guocheng. Very long chain Acal-GA dehydrogenase: gene structure, clinical phenotypes and mutations. December 1999. Mentor: Jiahuan Ding.
- Wood, Mary Kathleen. An assessment of interviral recombination frequencies and antisense transgene topologies using plant model systems. December 1999. Mentor: Christopher Kearney.
- Papayoti, Maria. CD40 growth regulation of breast carcinoma cells. August 2000. Mentor: Alex Tong.
- Munk-Martin, Tracy. Pathophysiological mechanisms of dopa-responsive dystonia. May 2001. Mentor: Keith Hyland.
- Arning, Erland. The role of homocysteine and sulfur amino acid metabolism in the central nervous system: clinical and experimental studies. August 2001. Mentor: Teodoro Bottiglieri.
- Martens, Gregory W. DNA based typing of swine leukocyte antigens. December 2002. Mentor: Douglas Smith.
- Zhang, Li-Feng. Characterization of the bi-directional promoter region between the human VLCAD and PSD-95 genes. December 2002. Mentor: Jiahuan Ding.
- Mallory, Jason. Exploring new avenues in carnitine-acylcarnitine translocase deficiency: identification of novel mutations and characterization of the 5′-flanking region. May 2004. Mentor: Jiahuan Ding.
- Daniel, Benjamin. Interferon-gamma and B7-H1 signals cooperate to ignite adaptive immunity to Toxoplasma gondii. May 2005. Mentor: Tyler Cu-riel.
- Varshney, Shikha. Recombinant expression and immunological and biophysical characterization of the major mountain cedar allergen, Jun a 1. May 2005. Mentor: Christopher Kearney.
- Wehbe, Hania. Towards enhanced cancer chemotherapy: studies on drug design, synergy, and drug target expression and resistance with the combretastatins and other chemotherapeutics. August 2005. Mentors: Kevin Pinney and Christopher Kearney.
- Moehnke, Marcie. The recombinant expression of two pollen allergens using plant-viral and yeast expression systems. December 2005. Mentor: Christopher Kearney.
- Gomes, Erica. Anti-tumor properties of CD40 ligand when delivered as a transgene by the conditional replicative oncolytic adenovirus AdEH to breast cancer cells. June 2006. Mentor: Alex Tong.
- Lyng, Eric. Gamma hydroxybutyrate (GHB): mechanisms of central nervous system toxicity. March 2006. Mentor: Teodoro Bottiglieri.
- Ho, Chak Sum. Molecular characterization of swine leukocyte antigen diversity in outbred pig populations. September 2006. Mentor: Douglas Smith.
- Rodrigues, Margret. Growth inhibition of human multiple myeloma cells by a conditional-replicative, oncolytic adenovirus armed with the CD154 (DD40-ligand) transgene. October 2006. Mentor: Alex Tong.
- Samuel, Shirley. Anti-tumor activity of an oncolytic adenoviral construct expressing a small interfering RNA transgene. October 2006. Mentor: Alex Tong.
- Yu, Chun-I. Humanized mice to test vaccination against influenza virus via dendritic cells. March 2008. Mentor: A. Karolina Palucka.
- Wood, David Rowe. Design, optimization and evaluation of conditionally active gene therapy vectors. March 2008. Mentor: Jiahuan Ding.
- Patel, Pinakeen. Gene expression profiling to understand the alterations in the monocyte compartment of pediatric systemic lupus erythematosus. April 2008. Mentor: Virginia Pascual.