Action of an endo-β-1,3(4)-glucanase on cellobiosyl unit structure in barley β-1,3:1,4-glucan

References

• Fincher GB. Molecular and cellular biology associated with endosperm mobilization in germinating cereal grains. Annu. Rev. Plant Physiol. Plant Mol. Biol. 1989;40:305–346.10.1146/annurev.pp.40.060189.001513
   Web of Science ®Google Scholar
• Xue X, Fry SC. Evolution of mixed-linkage (1 → 3, 1 → 4)-β-D-glucan (MLG) and xyloglucan in Equisetum (horsetails) and other monilophytes. Ann. Bot. 2012;109:873–886.10.1093/aob/mcs018
   PubMed Web of Science ®Google Scholar
• Fry SC, Nesselrode BH, Miller JG, Mewburn BR. Mixed-linkage (1→3,1→4)-β-D-glucan is a major hemicellulose of Equisetum (horsetail) cell walls. New Phytol. 2008;179:104–115.10.1111/nph.2008.179.issue-1
   PubMed Web of Science ®Google Scholar
• Kato Y, Nevins DJ. Enzymic dissociation of Zea shoot cell wall polysaccharides: II. Dissociation of (1 → 3),(1 → 4)-β-D-glucan by purified (1 → 3),(1 → 4)-β-D-glucan 4-glucanohydrolase from Bacillus subtilis. Plant Physiol. 1984;75:745–752.10.1104/pp.75.3.745
   PubMed Web of Science ®Google Scholar
• Simmons TJ, Uhrín D, Gregson T, Murray L, Sadler IH, Fry SC. An unexpectedly lichenase-stable hexasaccharide from cereal, horsetail and lichen mixed-linkage β-glucans (MLGs): implications for MLG subunit distribution. Phytochemistry. 2013;95:322–332.10.1016/j.phytochem.2013.08.003
   PubMed Web of Science ®Google Scholar
• Gibeaut DM, Carpita NC. Synthesis of (1 → 3), (1 → 4)-β-D-glucan in the Golgi apparatus of maize coleoptiles. Proc. Nat. Acad. Sci. 1993;90:3850–3854.10.1073/pnas.90.9.3850
   PubMed Web of Science ®Google Scholar
• Becker M, Vincent C, Reid JS. Biosynthesis of (1,3)(1,4)-β-glucan and (1,3)-β-glucan in barley (Hordeum vulgare L.). Properties of the membrane-bound glucan synthases. Planta. 1995;195:331–338.
   PubMed Web of Science ®Google Scholar
• Kimpara T, Aohara T, Soga K, Wakabayashi K, Hoson T, Tsumuraya Y, Kotake T. β-1,3:1,4-Glucan synthase activity in rice seedlings under water. Ann. Bot. 2008;102:221–226.10.1093/aob/mcn077
   PubMed Web of Science ®Google Scholar
• Burton RA, Wilson SM, Hrmova M, Harvey AJ, Shirley NJ, Medhurst A, Stone BA, Newbigin EJ, Bacic A, Fincher GB. Cellulose synthase-like CslF genes mediate the synthesis of cell wall (1,3;1,4)-β-D-glucans. Science. 2001;311:1940–1942.
   Web of Science ®Google Scholar
• Doblin MS, Pettolino FA, Wilson SM, Campbell R, Burton RA, Fincher GB, Newbigin E, Bacic A. A barley cellulose synthase-like CSLH gene mediates (1,3;1,4)-β-D-glucan synthesis in transgenic Arabidopsis. Proc. Nat. Acad. Sci. 2009;106:5996–6001.10.1073/pnas.0902019106
   PubMed Web of Science ®Google Scholar
• Urbanowicz BR, Rayon C, Carpita NC. Topology of the maize mixed linkage (1 → 3),(1 → 4)-β-D-glucan synthase at the Golgi membrane. Plant Physiol. 2004;134:758–768.10.1104/pp.103.032011
   PubMed Web of Science ®Google Scholar
• Carpita NC. Update on mechanisms of plant cell wall biosynthesis: how plants make cellulose and other (1 → 4)-β-D-glycans. Plant Physiol. 2011;155:171–184.10.1104/pp.110.163360
   PubMed Web of Science ®Google Scholar
• Huber DJ, Nevins DJ. β-D-glucan hydrolase activity in Zea coleoptile cell walls. Plant Physiol. 1980;65:768–773.10.1104/pp.65.5.768
   PubMed Web of Science ®Google Scholar
• Hrmova M, Banik M, Harvey AJ, Garrett TP, Varghese JN, Høj PB, Fincher GB. Polysaccharide hydrolases in germinated barley and their role in the depolymerization of plant and fungal cell walls. Int. J. Biol. Macromol. 1997;21:67–72.10.1016/S0141-8130(97)00043-3
   PubMed Web of Science ®Google Scholar
• Fincher GB, Lock PA, Morgan MM, Lingelbach K, Wettenhall RE, Mercer JF, Brandt A, Thomsen KK. Primary structure of the (1 → 3,1 → 4)-β-D-glucan 4-glucohydrolase from barley aleurone. Proc. Nat. Acad. Sci. 1986;83:2081–2085.10.1073/pnas.83.7.2081
   PubMed Web of Science ®Google Scholar
• Yoshida K, Komae K. A rice family 9 glycoside hydrolase isozyme with broad substrate specificity for hemicelluloses in type II cell walls. Plant Cell Physiol. 2006;47:1541–1554.10.1093/pcp/pcl020
   PubMed Web of Science ®Google Scholar
• Buchanan M, Burton RA, Dhugga KS, Rafalski AJ, Tingey SV, Shirley NJ, Fincher GB. Endo-(1,4)-β-glucanase gene families in the grasses: temporal and spatial co-transcription of orthologous genes1. BMC Plant Biol. 2012;12:235-1–235-19.10.1186/1471-2229-12-235
   Web of Science ®Google Scholar
• Hrmova M, Harvey AJ, Wang J, Shirley NJ, Jones GP, Stone BA, Fincher GB. Barley β-D-glucan exohydrolases with β-D-glucosidase activity. Purification, characterization, and determination of primary structure from a cDNA clone. J. Biol. Chem. 1996;271:5277–5286.
   PubMed Web of Science ®Google Scholar
• Kotake T, Nakagawa N, Takeda K, Sakurai N. Auxin-induced elongation growth and expressions of cell wall-bound exo- and endo-beta-glucanases in barley coleoptiles. Plant Cell Physiol. 2000;41:1272–1278.10.1093/pcp/pcd056
   PubMed Web of Science ®Google Scholar
• Kawai R, Igarashi K, Yoshida M, Kitaoka M, Samejima M. Hydrolysis of β-1,3/1,6-glucan by glycoside hydrolase family 16 endo-1,3(4)-β-glucanase from the basidiomycete Phanerochaete chrysosporium. Appl. Microbiol. Biotechnol. 2006;71:898–906.10.1007/s00253-005-0214-4
   PubMed Web of Science ®Google Scholar
• Vasur J, Kawai R, Andersson E, Igarashi K, Sandgren M, Samejima M, Ståhlberg J. X-ray crystal structures of Phanerochaete chrysosporium Laminarinase 16A in complex with products from lichenin and laminarin hydrolysis. FEBS J. 2009;276:3858–3869.10.1111/ejb.2009.276.issue-14
   PubMed Web of Science ®Google Scholar
• Hrmova M, Fincher GB. Purification and properties of three (1 → 3)-β-D-glucanase isoenzymes from young leaves of barley (Hordeum vulgare). Biochem. J. 1993;289:453–461.
   PubMed Web of Science ®Google Scholar
• Nelson N. A photometric adaptation of the Somogyi method for the determination of glucose. J. Biol. Chem. 1944;153:375–380.
   Google Scholar
• Somogyi M. Notes on sugar determination. J. Biol. Chem. 1952;195:19–23.
   PubMed Web of Science ®Google Scholar
• Bradford MM. A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding. Anal. Biochem. 1976;72:248–254.10.1016/0003-2697(76)90527-3
   PubMed Web of Science ®Google Scholar
• DuBois M, Gilles KA, Hamilton JK, Rebers PA, Smith F. Colorimetric method for determination of sugars and related substances. Anal. Chem. 1956;28:350–356.10.1021/ac60111a017
   Web of Science ®Google Scholar
• Hakomori S. A rapid premethylation of glycolipid, and polysaccharide catalyzed by methylsulfinyl carbanion in dimethyl sulfoxide. J. Biochem. 1964;55:205–208.
   PubMed Web of Science ®Google Scholar
• Albersheim P, Nevins DJ, English PD, Karr A. A method for the analysis of sugars in plant cell-wall polysaccharides by gas liquid chromatography. Carbohydr. Res. 1967;5:340–345.10.1016/S0008-6215(00)80510-8
   Google Scholar
• Matsuura F, Imaoka A. Chromatographic separation of asparagine-linked oligosaccharides labeled with an ultravioletabsorbing compound,p-aminobenzoic acid ethyl ester. Glycoconjugate J. 1988;5:13–26.10.1007/BF01048328
   Web of Science ®Google Scholar
• Ciucanu I, Kerek F. A simple and rapid method for the permethylation of carbohydrates. Carbohydr. Res. 1984;131:209–217.10.1016/0008-6215(84)85242-8
   Web of Science ®Google Scholar
• Tryfona T, Liang H-C, Kotake T, Kaneko S, Marsh J, Ichinose H, Lovegrove A, Tsumuraya Y, Shewry PR, Stephens E, Dupree P. Carbohydrate structural analysis of wheat flour arabinogalactan protein. Carbohydr. Res. 2010;345:2648–2656.10.1016/j.carres.2010.09.018
   PubMed Web of Science ®Google Scholar
• Goubet F, Jackson P, Deery MJ, Dupree P. Polysaccharide analysis using carbohydrate gel electrophoresis: a method to study plant cell wall polysaccharides and polysaccharide hydrolases. Anal. Biochem. 2002;300:53–68.10.1006/abio.2001.5444
   PubMed Web of Science ®Google Scholar
• Domon B, Costello CE. A systematic nomenclature for carbohydrate fragmentations in FAB-MS/MS spectra of glycoconjugates. Glycoconjugate J. 1988;5:397–409.10.1007/BF01049915
   Web of Science ®Google Scholar
• Chai W, Piskarev V, Lawson AM. Negative-ion electrospray mass spectrometry of neutral underivatized oligosaccharides. Anal. Chem. 2001;73:651–657.10.1021/ac0010126
   PubMed Web of Science ®Google Scholar
• Maslen SL, Goubet F, Adam A, Dupree P, Stephens E. Structure elucidation of arabinoxylan isomers by normal phase HPLC-MALDI-TOF/TOF-MS/MS. Carbohydr. Res. 2007;342:724–735.10.1016/j.carres.2006.12.007
   PubMed Web of Science ®Google Scholar
• Spina E, Sturiale L, Romeo D, Impallomeni G, Garozzo D, Waidelich D, Glueckmann M. New fragmentation mechanisms in matrix-assisted laser desorption/ionization time-of-flight/time-of-flight tandem mass spectrometry of carbohydrates. Rapid Commun. Mass Spectrom. 2004;18:392–398.10.1002/(ISSN)1097-0231
   PubMed Web of Science ®Google Scholar
• Hrmova M, Garrett TP, Fincher GB. Subsite affinities and disposition of catalytic amino acids in the substrate-binding region of barley 1,3-β-glucanases. Implications in plant–pathogen interactions. J. Biol. Chem. 1995;270:14556–14563.10.1074/jbc.270.24.14556
   PubMed Web of Science ®Google Scholar
• Takagi E, Hatada Y, Akita M, Ohta Y, Yokoi G, Miyazaki T, Nishikawa A, Tonozuka T. Crystal structure of the catalytic domain of a GH16 β-agarase from a deep-sea bacterium, Microbulbifer thermotolerans JAMB-A94. Biosci. Biotechnol. Biochem. 2014;6:1–8.
   Google Scholar
• Kotake T, Hirata N, Degi Y, Ishiguro M, Kitazawa K, Takata R, Ichinose H, Kaneko S, Igarashi K, Samejima M, Tsumuraya Y. Endo-β-1,3-galactanase from winter mushroom Flammulina velutipes. J. Biol. Chem. 2011;286:27848–27854.10.1074/jbc.M111.251736
   PubMed Web of Science ®Google Scholar
• Baumann MJ, Eklöf JM, Michel G, Kallas AM, Teeri TT, Czjzek M, Brumer H III. Structural evidence for the evolution of xyloglucanase activity from xyloglucan endo-transglycosylases: biological implications for cell wall metabolism. Plant Cell. 2007;19:1947–1963.10.1105/tpc.107.051391
   PubMed Web of Science ®Google Scholar
• Yokoyama R, Uwagaki Y, Sasaki H, Harada T, Hiwatashi Y, Hasebe M, Nishitani K. Biological implications of the occurrence of 32 members of the XTH (xyloglucan endotransglucosylase/hydrolase) family of proteins in the bryophyte Physcomitrella patens. Plant J. 2010;64:645–656.10.1111/tpj.2010.64.issue-4
   PubMed Web of Science ®Google Scholar
• Hehemann JH, Correc G, Barbeyron T, Helbert W, Czjzek M, Michel G. Transfer of carbohydrate-active enzymes from marine bacteria to Japanese gut microbiota. Nature. 2010;464:908–912.10.1038/nature08937
   PubMed Web of Science ®Google Scholar
• Barbeyron T, Gerard A, Potin P, Henrissat B, Kloareg B. The kappa-carrageenase of the marine bacterium Cytophaga drobachiensis. Structural and phylogenetic relationships within family-16 glycoside hydrolases. Mol. Biol. Evol. 1998;15:528–537.10.1093/oxfordjournals.molbev.a025952
   PubMed Web of Science ®Google Scholar
• Michel G, Chantalat L, Duee E, Barbeyron T, Henrissat B, Kloareg B, Dideberg O. The κ-carrageenase of P. carrageenovora features a tunnel-shaped active site. Structure. 2001;9:513–525.10.1016/S0969-2126(01)00612-8
   PubMed Web of Science ®Google Scholar