Selection and evaluation of reference genes for expression analysis of Cassi

References

• Heid CA, Stevens J, Livak KJ, Williams PM. Real time quantitative PCR. Genome Res. 1996;6:986–994.10.1101/gr.6.10.986
   PubMed Web of Science ®Google Scholar
• Huggett J, Dheda K, Bustin S, Zumla A. Real-time RT-PCR normalisation strategies and considerations. Genes Immun. 2005;6:279–284.10.1038/sj.gene.6364190
   PubMed Web of Science ®Google Scholar
• Andersen CL, Jensen JL, Ørntoft TF. Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Cancer Res. 2004;64:5245–5250.10.1158/0008-5472.CAN-04-0496
   PubMed Web of Science ®Google Scholar
• Bustin SA, Nolan T. Pitfalls of quantitative real-time reverse-transcription polymerase chain reaction. J. Biomol. Tech. 2004;15:155–166.
   PubMedGoogle Scholar
• Fleige S, Pfaffl MW. RNA integrity and the effect on the real-time qRT-PCR performance. Mol. Aspects Med. 2006;27:126–139.10.1016/j.mam.2005.12.003
   PubMedGoogle Scholar
• Radonić A, Thulke S, Mackay IM, Landt O, Siegert W, Nitsche A. Guideline to reference gene selection for quantitative real-time PCR. Biochem. Biophys. Res. Commun. 2004;313:856–862.10.1016/j.bbrc.2003.11.177
   PubMed Web of Science ®Google Scholar
• Li Q-F, Sun SS, Yuan D-Y, Yu H-X, Gu M-H, Liu Q-Q. Validation of candidate reference genes for the accurate normalization of real-time quantitative RT-PCR data in rice during seed development. Plant Mol. Biol. Rep. 2010;28:49–57.10.1007/s11105-009-0124-1
   Web of Science ®Google Scholar
• Chen L, Zhong H-y, Kuang J-f, Li J-g, Lu W-j, Chen J-y. Validation of reference genes for RT-qPCR studies of gene expression in banana fruit under different experimental conditions. Planta. 2011;234:377–390.10.1007/s00425-011-1410-3
   PubMed Web of Science ®Google Scholar
• Czechowski T, Stitt M, Altmann T, Udvardi MK, Scheible W-R. Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant Physiol. 2005;139:5–17.10.1104/pp.105.063743
   PubMed Web of Science ®Google Scholar
• Schmidt GW, Delaney SK. Stable internal reference genes for normalization of real-time RT-PCR in tobacco (Nicotiana tabacum) during development and abiotic stress. Mol. Genet. Genomics. 2010;283:233–241.10.1007/s00438-010-0511-1
   PubMed Web of Science ®Google Scholar
• Narsai R, Ivanova A, NgS, Whelan J. Defining reference genes in Oryza sativa using organ, development, biotic and abiotic transcriptome datasets. BMC Plant Biol. 2010;10:56–65.10.1186/1471-2229-10-56
   PubMed Web of Science ®Google Scholar
• Warzybok A, Migocka M. Reliable reference genes for normalization of gene expression in Cucumber Grown under different nitrogen nutrition. PLoS One. 2013;8:e72887.10.1371/journal.pone.0072887
   Google Scholar
• Reid KE, Olsson N, Schlosser J, Peng F, Lund ST. An optimized grapevine RNA isolation procedure and statistical determination of reference genes for real-time RT-PCR during berry development. BMC Plant Biol. 2006;6:27–36.10.1186/1471-2229-6-27
   PubMed Web of Science ®Google Scholar
• Long X-Y, Wang J-R, Ouellet T, Rocheleau H, Wei Y-M, Pu Z-E, Jiang Q-T, Lan X-J, Zheng Y-L. Genome-wide identification and evaluation of novel internal control genes for Q-PCR based transcript normalization in wheat. Plant Mol. Biol. 2010;74:307–311.10.1007/s11103-010-9666-8
   PubMed Web of Science ®Google Scholar
• Hu R, Fan C, Li H, Zhang Q, Fu Y-F. Evaluation of putative reference genes for gene expression normalization in soybean by quantitative real-time RT-PCR. BMC Mol. Biol. 2009;10:93–99.10.1186/1471-2199-10-93
   PubMed Web of Science ®Google Scholar
• Barsalobres-Cavallari CF, Severino FE, Maluf MP, Maia IG. Identification of suitable internal control genes for expression studies in Coffea arabica under different experimental conditions. BMC Mol. Biol. 2009;10:1–10.10.1186/1471-2199-10-1
   PubMed Web of Science ®Google Scholar
• Kim S-J, Kim K-W, Kim D-S, Kim M-C, Jeon Y-D, Kim S-G, Jung H-J, Jang H-J, Lee B-C, Chung W-S. The protective effect of Cassia obtusifolia on DSS-induced colitis. Am. J. Chin. Med. 2011;39:565–577.10.1142/S0192415X11009032
   PubMed Web of Science ®Google Scholar
• Dave H, Ledwani L. A review on anthraquinones isolated from Cassia species and their applications. Indian J. Nat. Prod. Res. 2012;3:291–319.
   Google Scholar
• Sadiq I, Shuaibu M, Bello A, Isah STA, Izuagie T, Nasiru S, Kamaru M. Phytochemistry and antimicrobial activities of Cassia occidentalis used for herbal remedies. Methods. 2012;18:19–28.
   Google Scholar
• Singh D, Sharma S, Rani R, Mishra S, Sharma R. A new flavonoid and other two flavonoids isolated from different plant parts of selected Cassia species. Asian J. Res. Chem. 2011;4:818–821.
   Google Scholar
• Tzeng T-F, Lu H-J, Liou S-S, Chang CJ, Liu I-M. Reduction of lipid accumulation in white adipose tissues by Cassia tora (Leguminosae) seed extract is associated with AMPK activation. Food Chem. 2013;136:1086–1094.10.1016/j.foodchem.2012.09.017
   PubMed Web of Science ®Google Scholar
• Dai, Y-c, Deng, N, Liu, W, Tan, B-y. Extraction, isolation and purification of aurantio-obtusin in Cassia seeds. Cent. South Pharm. 2011;3:1–7.
   Google Scholar
• Liao H, Ren W, Kang Z, Jiang J-H, Zhao X-J, Du L-F. A trypsin inhibitor from Cassia obtusifolia seeds: isolation, characterization and activity against Pieris rapae. Biotechnol. Lett. 2007;29:653–658.10.1007/s10529-006-9281-6
   PubMed Web of Science ®Google Scholar
• Yang Y-C, Lim M-Y, Lee H-S. Emodin isolated from Cassia obtusifolia (Leguminosae) seed shows larvicidal activity against three mosquito species. J. Agric. Food Chem. 2003;51:7629–7631.10.1021/jf034727t
   PubMed Web of Science ®Google Scholar
• Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, De Paepe A, Speleman F. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol. 2002;3:1–34.
   Web of Science ®Google Scholar
• Liu Z, Song T, Zhu Q, Wang W, Zhou J, Liao H. De novo assembly and analysis of Cassia obtusifolia seed transcriptome to identify genes involved in the biosynthesis of active metabolites. Biosci. Biotechnol. Biochem. 2014;78:791–799.
   PubMed Web of Science ®Google Scholar
• Schlotter YM, Veenhof EZ, Brinkhof B, Rutten VP, Spee B, Willemse T, Penning LC. A GeNorm algorithm-based selection of reference genes for quantitative real-time PCR in skin biopsies of healthy dogs and dogs with atopic dermatitis. Vet. Immunol. Immunopathol. 2009;129:115–118.10.1016/j.vetimm.2008.12.004
   PubMed Web of Science ®Google Scholar
• Wang Q, Ishikawa T, Michiue T, Zhu B-L, Guan D-W, Maeda H. Stability of endogenous reference genes in postmortem human brains for normalization of quantitative real-time PCR data: comprehensive evaluation using geNorm, NormFinder, and BestKeeper. Int. J. Legal Med. 2012;126:943–952.10.1007/s00414-012-0774-7
   PubMed Web of Science ®Google Scholar
• Pfaffl MW, Tichopad A, Prgomet C, Neuvians TP. Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper—Excel-based tool using pair-wise correlations. Biotech. Lett. 2004;26:509–515.10.1023/B:BILE.0000019559.84305.47
   PubMed Web of Science ®Google Scholar
• Al-Menaie H, Al-Ragam O, Al-Shatti A, Mathew M, Suresh N. Interactive effect of soil mixture and fertilizer concentration on the growth of Cassia seedlings. Eur. J. Sci. Res. 2013;94:61–66.
   Google Scholar
• Rushton PJ, Somssich IE, Ringler P, Shen QJ. WRKY transcription factors. Trends Plant Sci. 2010;15:247–258.10.1016/j.tplants.2010.02.006
   PubMed Web of Science ®Google Scholar
• Chen L, Song Y, Li S, Zhang L, Zou C, Yu D. The role of WRKY transcription factors in plant abiotic stresses. Biochim. Biophys. Acta (BBA)—Gene Regul. Mech. 2012;1819:120–128.10.1016/j.bbagrm.2011.09.002
   PubMed Web of Science ®Google Scholar