1,131
Views
25
CrossRef citations to date
0
Altmetric
Biochemistry & Molecular Biology

Characterization of an Alteromonas long-type ulvan lyase involved in the degradation of ulvan extracted from Ulva ohnoi

, , &
Pages 2145-2151 | Received 26 Jul 2017, Accepted 06 Sep 2017, Published online: 29 Sep 2017

References

  • Nigam PS, Singh A. Production of liquid biofuels from renewable resources. Prog Energy Combust Sci. 2011;37:52–68.10.1016/j.pecs.2010.01.003
  • Smetacek V, Zingone A. Green and golden seaweed tides on the rise. Nature. 2013;504:84–88.10.1038/nature12860
  • Bobin-Dubigeon C, Lahaye M, Guillon F, et al. Factors limiting the biodegradation of Ulva sp. cell-wall polysaccharides. J Sci Food Agr. 1997;5:341–351.
  • Lahaye M, Robic A. Structure and functional properties of ulvan, a polysaccharide from green seaweeds. Biomacromolecules. 2007;8:1765–1774.10.1021/bm061185q
  • Huber GW, Iborra S, Corma A. Synthesis of transportation fuels from biomass: chemistry, catalysts, and engineering. Chem Rev. 2006;106:4044–4098.10.1021/cr068360d
  • Yun YM, Kim DH, Oh YK, et al. Application of a novel enzymatic pretreatment using crude hydrolytic extracellular enzyme solution to microalgal biomass for dark fermentative hydrogen production. Bioresour Technol. 2014;159:365–372.10.1016/j.biortech.2014.02.129
  • Lahaye M, Brunel M, Bonnin E. Fine chemical structure analysis of oligosaccharides produced by an ulvan-lyase degradation of the water-soluble cell-wall polysaccharides from Ulva sp, (Ulvales, Chlorophyta). Carbohydr Res. 1997;304:325–333.10.1016/S0008-6215(97)00270-X
  • Barbeyron T, Lerat Y, Sassi JF, et al. Persicivirga ulvanivorans sp. nov., a marine member of the family Flavobacteriaceae that degrades ulvan from green algae. Int J Syst Evol Microbiol. 2011;61:1899–1905.10.1099/ijs.0.024489-0
  • Nyvall Collén P, Sassi JF, Rogniaux H, et al. Ulvan lyases isolated from the flavobacteria Persicivirga ulvanivorans are the first members of a new polysaccharide lyase family. J Biol Chem. 2011;286:42063–42071.10.1074/jbc.M111.271825
  • Kopel M, Helbert W, Henrissat B, et al. Draft genome sequence of Nonlabens ulvanivorans, an Ulvan-degrading bacterium. Genome Announc. 2014;2:e00793–14.
  • Kopel M, Helbert W, Belnik Y, et al. New family of ulvan lyases identified in three isolates from the alteromonadales order. J Biol Chem. 2016;291:5871–5878.10.1074/jbc.M115.673947
  • Hiraoka M, Shimada S, Uenosono M, et al. A new green-tide-forming alga Ulva ohnoi Hiraoka et Shimada sp. nov. (Ulvales, Ulvophyceae) from Japan. Phycol Res. 2004;52:17–29.
  • Robic A, Sassi JF, Lahaye M. Impact of stabilization treatments of the green seaweed Ulva rotundata (Chlorophyta) on the extraction yield, the physico-chemical and rheological properties of ulvan. Carbohdr Polym. 2008;74:344–352.10.1016/j.carbpol.2008.02.020
  • Ruijssenaars HJ, Hartmans S. Plate screening methods for the detection of polysaccharase-producing microorganisms. Appl Microbiol Biotechnol. 2001;55:143–149.10.1007/s002530000477
  • Sawabe T, Takahashi H, Ezura Y, et al. Cloning, sequence analysis and expression of Pseudoalteromonas elyakovii IAM 14594 gene (alyPEEC) encoding the extracellular alginate lyase. Carbohydr Res. 2001;335:11–21.10.1016/S0008-6215(01)00198-7
  • Miller GL. Use of dinitrosalicylic acid reagent for determination of reducing sugar. Anal Chem. 1959;31:426–428.10.1021/ac60147a030
  • Yoshimochi T, Hikichi Y, Kiba A, et al. The global virulence regulator phca negatively controls the Ralstonia solanacearum hrp regulatory cascade by repressing expression of the prhIR signaling proteins. J Bacteriol. 2009;191:3424–3428.10.1128/JB.01113-08
  • Preiss J, Ashwell G. Alginic acid metabolism in bacteria. I. Enzymatic formation of unsaturated oligosaccharides and 4-deoxy-l-erythro-5-hexoseulose uronic acid. J Biol Chem. 1962;237:309–316.
  • He C, Ohnishi K. Efficient renaturation of inclusion body proteins denatured by SDS. Biochem Biophys Res Commun. 2017;490:1250–1253.10.1016/j.bbrc.2017.07.003
  • Maruyama Y, Itoh T, Kaneko A, et al. Structure of a bacterial ABC transporter involved in the import of an acidic polysaccharide alginate. Structure. 2015;23:1643–1654.10.1016/j.str.2015.06.021
  • Melcher RL, Neumann M, Fuenzalida Werner JP, et al. Revised domain structure of ulvan lyase and characterization of the first ulvan binding domain. Sci Rep. 2017;7:44115.10.1038/srep44115
  • Whyte JNC, Hosford SPC, Englar JR. Assignment of agar or carrageenan structures to red algal polysaccharides. Carbohydr Res. 1985;40:336–341.10.1016/0008-6215(85)85135-1
  • Préchoux A, Genicot S, Rogniaux H, et al. Enzyme-assisted preparation of furcellaran-like κ-/β-carrageenan. Mar Biotechnol. 2016;18:133–143.10.1007/s10126-015-9675-3
  • Ulaganathan T, Boniecki MT, Foran E, et al. New ulvan-degrading polysaccharide lyase family: structure and catalytic mechanism suggests convergent evolution of active site architecture. ACS Chem Biol. 2017;12:1269–1280.10.1021/acschembio.7b00126
  • Helbert W. Marine polysaccharide sulfatases. Front Mar Sci. 2017;4:6. doi:10.3389/fmars.2017.00006
  • Foran E, Buravenkova V, Kopel M, et al. Functional characterization of a novel “ulvan utilization loci” found in Alteromonas sp. LOR genome. Algal Res. 2017;25:39–46.10.1016/j.algal.2017.04.036
  • Marchler-Bauer A, Bryant SH. CD-Search: protein domain annotations on the fly. Nucleic Acids Res. 2004;32:W327–331.10.1093/nar/gkh454
  • Petersen TN, Brunak S, Von Heijne G. SignalP 4.0: discriminating signal peptides from transmembrane regions. Nat Methods. 2011;8:785–786.10.1038/nmeth.1701
  • Heger A, Holm L. Rapid automatic detection and alignment of repeats in protein sequences. Proteins. 2000;41:224–237.10.1002/(ISSN)1097-0134
  • Saitou N, Nei M. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol. 1987;4:406–425.
  • Kumar S, Stecher G, Tamura K. MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets. Mol Biol Evol. 2016;33:1870–1874.10.1093/molbev/msw054

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.