Interoperability of disparate engineering domain ontologies using basic formal ontology

References

• Adam, G. A. O., and Detmar Zimmer. 2014. “Design for Additive Manufacturing – Element Transitions and Aggregated Structures.” CIRP Journal of Manufacturing Science and Technology 7 (1): 20–28.
   Google Scholar
• Ali, Munira Mohd, Rahul Rai, J. Neil Otte, and Barry Smith. 2019. “A Product Life Cycle Ontology for Additive Manufacturing.” Computers in Industry 105: 191–203.
   Web of Science ®Google Scholar
• Ameri, Farhad, and Debasish Dutta. 2006. “An Upper Ontology for Manufacturing Service Description.” In ASME 2006 International Design Engineering Technical Conferences and Computers and Information in Engineering Conference, pp. 651–661. American Society of Mechanical Engineers, 2006.
   Google Scholar
• Arp, Robert, Barry Smith, and Andrew D. Spear. 2015. Building Ontologies with Basic Formal Ontology. Cambridge, Massachusetts: MIT Press.
   Google Scholar
• Barclift, Michael W., and Christopher B. Williams. 2012. “Examining Variability in the Mechanical Properties of Parts Manufactured via Polyjet Direct 3D Printing.” In International Solid Freeform Fabrication Symposium, pp. 6–8. Austin, Texas: University of Texas at Austin, 2012.
   Google Scholar
• Barrack, R. L., E. L. Ruh, B. M. Williams, A. D. Ford, K. Foreman, and R. M. Nunley. 2012. “Patient Specific Cutting Blocks Are Currently of No Proven Value.” The Journal of Bone and Joint Surgery. British Volume 94 (11 Suppl A): 95–99.
   PubMedGoogle Scholar
• Berners-Lee, Tim, James Hendler, and Ora Lassila. 2001. “The Semantic Web.” Scientific American 284 (5): 28–37.
   Web of Science ®Google Scholar
• Bin Maidin, Shajahan, Ian Campbell, and Eujin Pei. 2012. “Development of a Design Feature Database to Support Design for Additive Manufacturing.” Assembly Automation 32 (3): 235–244.
   Web of Science ®Google Scholar
• Bona, Jonathan P., and Werner Ceusters. 2018. “Mismatches Between Major Subhierarchies and Semantic Tags in SNOMED CT.” Journal of Biomedical Informatics 81: 1–15.
   PubMed Web of Science ®Google Scholar
• Bone, M., M. Blackburn, B. Kruse, J. Dzielski, T. Hagedorn, and I. Grosse. 2018. “Toward an Interoperability and Integration Framework to Enable Digital Thread.” Systems 6 (4): 46.
   Web of Science ®Google Scholar
• Bourell, David L., David W. Rosen, and Ming C. Leu. 2014. “The Roadmap for Additive Manufacturing and its Impact.” 3D Printing and Additive Manufacturing 1 (1): 6–9.
   Google Scholar
• Breuker, Joost, André Valente, and Radboud Winkels. 2004. “Legal Ontologies in Knowledge Engineering and Information Management.” Artificial Intelligence and Law 12 (4): 241–277.
   Google Scholar
• Chandrasegaran, Senthil K., Karthik Ramani, Ram D. Sriram, Imré Horváth, Alain Bernard, Ramy F. Harik, and Wei Gao. 2013. “The Evolution, Challenges, and Future of Knowledge Representation in Product Design Systems.” Computer-Aided Design 45 (2): 204–228.
   Web of Science ®Google Scholar
• Cowell, Lindsay Grey, and Barry Smith. 2010. “Infectious Disease Ontology.” In Infectious Disease Informatics, 373–395. New York, New York: Springer.
   Google Scholar
• Demers-Payette, Olivier, Pascale Lehoux, and Geneviève Daudelin. 2016. “Responsible Research and Innovation: A Productive Model for the Future of Medical Innovation.” Journal of Responsible Innovation 3 (3): 188–208.
   Web of Science ®Google Scholar
• Dérand, Per, Lars-Erik Rännar, and Jan-M Hirsch. 2012. “Imaging, Virtual Planning, Design, and Production of Patient-Specific Implants and Clinical Validation in Craniomaxillofacial Surgery.” Craniomaxillofacial Trauma and Reconstruction 5 (3): 137–144.
   PubMedGoogle Scholar
• Dinar, Mahmoud, and David W. Rosen. 2017. “A Design for Additive Manufacturing Ontology.” Journal of Computing and Information Science in Engineering 17 (2): 021013.
   Web of Science ®Google Scholar
• Eddy, Douglas, Sundar Krishnamurty, Ian Grosse, Maxwell Perham, Jack Wileden, and Farhad Ameri. 2015. Knowledge Management with an Intelligent Tool for Additive Manufacturing. Boston, MA: ASME.
   Google Scholar
• Eddy, Douglas, Sundar Krishnamurty, Ian Grosse, and Jack Wileden. 2011. Support of Product Innovation with a Modular Framework for Knowledge Management: A Case Study. Washington, DC: ASME.
   Google Scholar
• Eddy, Douglas, Sundar Krishnamurty, Ian Grosse, Paul Witherell, Jack Wileden, and Kemper Lewis. 2014. “An Integrated Approach to Information Modeling for the Sustainable Design of Products.” Journal of Computing and Information Science in Engineering 14 (2): 021011.
   Web of Science ®Google Scholar
• Edison, Ong, Zuoshuang Xiang, Boyang Zhao, Yue Liu, Yu Lin, Jie Zheng, Chris Mungall, Melanie Courtot, Alan Ruttenberg, and Yongqun He. 2017. “Ontobee: A Linked Ontology Data Server to Support Ontology Term Dereferencing, Linkage, Query and Integration.” Nucleic Acids Research 45 (D1): D347–D352.
   PubMed Web of Science ®Google Scholar
• Farré-Guasch, Elisabet, Jan Wolff, Marco N. Helder, Engelbert A. J. M. Schulten, Tim Forouzanfar, and Jenneke Klein-Nulend. 2015. “Application of Additive Manufacturing in Oral and Maxillofacial Surgery.” Journal of Oral and Maxillofacial Surgery 73 (12): 2408–2418.
   PubMed Web of Science ®Google Scholar
• Fenves, Steven Joseph. 2001. “Core Product Model for Representing Design Information.” NISTIR 6736. US Department of Commerce, Technology Administration, National Institute of Standards and Technology.
   Google Scholar
• Fernandes, Rui, Ian Grosse, Sundar Krishnamurty, Paul Witherell, and Jack Wileden. 2011. “Semantic Methods Supporting Engineering Design Innovation.” Advanced Engineering Informatics, 25 (2): 185–192.
   Google Scholar
• Fox, Mark S., and Michael Gruninger. 1998. “Enterprise Modeling.” AI Magazine 19 (3): 109.
   Web of Science ®Google Scholar
• Furini, Francesco, Rahul Rai, Barry Smith, Giorgio Colombo, and Venkat Krovi. 2016. “Development of a Manufacturing Ontology for Functionally Graded Materials.” ASME 2016 International Design Engineering Technical Conferences and Computers and Information in Engineering Conference, DETC2016-59964, V01BT02A030.
   Google Scholar
• Gardan, Nicolas, and Alexandre Schneider. 2015. “Topological Optimization of Internal Patterns and Support in Additive Manufacturing.” Journal of Manufacturing Systems 37: 417–425.
   Web of Science ®Google Scholar
• Gibson, I., G. Goenka, R. Narasimhan, and N. Bhat. 2010. “Design Rules for Additive Manufacture.” In Solid Freeform Fabrication Symposium, 705–716. Austin, TX: University Of Texas.
   Google Scholar
• Ginsburg, Gill. 2005. “Human Factors Engineering: A Tool for Medical Device Evaluation in Hospital Procurement Decision-Making.” Journal of Biomedical Informatics 38 (3): 213–219.
   PubMed Web of Science ®Google Scholar
• Grosse, Ian R., John M. Milton-benoit, and Jack C. Wileden. 2005. “Ontologies for Supporting Engineering Analysis Models.” Aie Edam 19 (01): 1–18.
   Web of Science ®Google Scholar
• Gruber, Thomas R. 1993. “A Translation Approach to Portable Ontology Specifications.” Knowledge Acquisition 5 (2): 199–220.
   Web of Science ®Google Scholar
• Gruber, Thomas R. 1995. “Toward Principles for the Design of Ontologies Used for Knowledge Sharing?” International Journal of Human-Computer Studies 43 (5): 907–928.
   Web of Science ®Google Scholar
• Hagedorn, Thomas J. 2018. “Supporting the Design of Additively Manufactured Medical Devices with Knowledge Management Through Ontologies.” Dissertation, University of Massachusetts Amherst.
   Google Scholar
• Hagedorn, Thomas J., Ian R. Grosse, and Sundar Krishnamurty. 2015. “A Concept Ideation Framework for Medical Device Design.” Journal of Biomedical Informatics 55: 218–230.
   PubMed Web of Science ®Google Scholar
• Hagedorn, Thomas J., Sundar Krishnamurty, and Ian R. Grosse. 2016. “An Information Model to Support User-Centered Design of Medical Devices.” Journal of Biomedical Informatics 62: 181–194.
   PubMed Web of Science ®Google Scholar
• Hagedorn, Thomas J., Sundar Krishnamurty, and Ian R. Grosse. 2018. “A Knowledge-Based Method for Innovative Design for Additive Manufacturing Supported by Modular Ontologies.” Journal of Computing and Information Science in Engineering 18 (2): 021009-1–021009-12. doi:10.1115/1.4039455.
   Web of Science ®Google Scholar
• Hirtz, Julie, Robert B. Stone, Daniel A. McAdams, Simon Szykman, and Kristin L. Wood. 2002. “A Functional Basis for Engineering Design: Reconciling and Evolving Previous Efforts.” Research in Engineering Design 13 (2): 65–82.
   Web of Science ®Google Scholar
• Jardini, André Luiz, Maria Aparecida Larosa, Rubens Maciel Filho, de Carvalho Zavaglia, Cecília Amélia, Luis Fernando Bernardes, Carlos Salles Lambert, Davi Reis Calderoni, and Paulo Kharmandayan. 2014. “Cranial Reconstruction: 3D Biomodel and Custom-Built Implant Created Using Additive Manufacturing.” Journal of Cranio-Maxillofacial Surgery 42 (8): 1877–1884.
   PubMed Web of Science ®Google Scholar
• Kaplan, A. V., D. S. Baim, J. J. Smith, D. A. Feigal, M. Simons, D. Jefferys, T. J. Fogarty, R. E. Kuntz, and M. B. Leon. 2004. “Medical Device Development: From Prototype to Regulatory Approval.” Circulation 109 (25): 3068–3072.
   PubMed Web of Science ®Google Scholar
• Kumar, Sanjay, and J. P Kruth. 2008. “Wear Performance of SLS/SLM Materials.” Advanced Engineering Materials 10 (8): 750–753.
   Web of Science ®Google Scholar
• Kumke, Martin, Hagen Watschke, Peter Hartogh, Ann-Kathrin Bavendiek, and Thomas Vietor. 2017. “Methods and Tools for Identifying and Leveraging Additive Manufacturing Design Potentials.” International Journal on Interactive Design and Manufacturing (IJIDeM) 12 (2): 481–493.
   Google Scholar
• Kumke, Martin, Hagen Watschke, and Thomas Vietor. 2016. “A New Methodological Framework for Design for Additive Manufacturing.” Virtual and Physical Prototyping 11 (1): 3–19.
   Web of Science ®Google Scholar
• Laverne, Floriane, Frédéric Segonds, Nabil Anwer, and Marc Le Coq. 2015. “Assembly Based Methods to Support Product Innovation in Design for Additive Manufacturing: An Exploratory Case Study.” Journal of Mechanical Design 137 (12): 121701.
   Web of Science ®Google Scholar
• Le, Duc-Hau, and Lan TM Dao. 2018. “Annotating Diseases Using Human Phenotype Ontology Improves Prediction of Disease-Associated Long Non-coding RNAs.” Journal of Molecular Biology 430 (15): 2219–2230.
   PubMed Web of Science ®Google Scholar
• Lethaus, Bernd, Lucas Poort, Roland Böckmann, Ralf Smeets, Rene Tolba, and Peter Kessler. 2012. “Additive Manufacturing for Microvascular Reconstruction of the Mandible in 20 Patients.” Journal of Cranio-Maxillofacial Surgery 40 (1): 43–46.
   PubMed Web of Science ®Google Scholar
• Martelli, Nicolas, Carole Serrano, Hélène van den Brink, Judith Pineau, Patrice Prognon, Isabelle Borget, and Salma El Batti. 2016. “Advantages and Disadvantages of 3-Dimensional Printing in Surgery: A Systematic Review.” Surgery 159 (6): 1485–1500.
   PubMed Web of Science ®Google Scholar
• Martin, Jennifer L., Daniel J. Clark, Stephen P. Morgan, John A. Crowe, and Elizabeth Murphy. 2012. “A User-Centred Approach to Requirements Elicitation in Medical Device Development: A Case Study from an Industry Perspective.” Applied Ergonomics 43 (1): 184–190.
   PubMed Web of Science ®Google Scholar
• Martin, Jennifer L., Beverley J. Norris, Elizabeth Murphy, and John A. Crowe. 2008. “Medical Device Development: The Challenge for Ergonomics.” Applied Ergonomics 39 (3): 271–283.
   PubMed Web of Science ®Google Scholar
• McPherson, Jeffery D., Ian R. Grosse, Sundar Krishnamurty, Jack Wileden, Elizabeth R. Dumont, and Michael A. Berthaume. 2013. “Integrating Biological and Engineering Ontologies.” Portland, OR, August 4–7. doi: 10.1115/DETC2013-13527.
   Google Scholar
• Musen, Mark A., John H. Gennari, Henrik Eriksson, Samson W. Tu, and Aangel R. Puerta. 1995. “PROTEGE-II: Computer Support for Development of Intelligent Systems from Libraries of Components.” Medinfo 8 (Pt 1): 766–770.
   PubMedGoogle Scholar
• Nagel, Robert L., Prem A. Midha, Andrea Tinsley, Robert B. Stone, Daniel A. McAdams, and L. H. Shu. 2008. “Exploring the Use of Functional Models in Biomimetic Conceptual Design.” Journal of Mechanical Design 130: 121102.
   Web of Science ®Google Scholar
• Nam, Denis, Patrick A. Maher, Brian J. Rebolledo, Danyal H. Nawabi, Alexander S. McLawhorn, and Andrew D. Pearle. 2013. “Patient Specific Cutting Guides Versus an Imageless, Computer-Assisted Surgery System in Total Knee Arthroplasty.” The Knee 20 (4): 263–267.
   PubMed Web of Science ®Google Scholar
• Noy, N. F., N. H. Shah, P. L. Whetzel, B. Dai, M. Dorf, N. Griffith, C. Jonquet, et al. 2009. “BioPortal: Ontologies and Integrated Data Resources at the Click of a Mouse.” Nucleic Acids Research 37 (2): W170–W173.
   PubMed Web of Science ®Google Scholar
• Perez, K. Blake, David S. Anderson, and Kristin L. Wood. 2015. “Crowdsourced Design Principles for Leveraging the Capabilities of Additive Manufacturing.” In International Conference of Engineerring Design, pp. 1–10. 2015.
   Google Scholar
• Preece, Daniel, Sarah B. Williams, Richard Lam, and Renate Weller. 2013. “‘Let’s Get Physical’: Advantages of a Physical Model Over 3D Computer Models and Textbooks in Learning Imaging Anatomy.” Anatomical Sciences Education 6 (4): 216–224.
   PubMed Web of Science ®Google Scholar
• Premkumar, Vivek, Sundar Krishnamurty, Jack C. Wileden, and Ian R. Grosse. 2014. “A Semantic Knowledge Management System for Laminated Composites.” Advanced Engineering Informatics 28 (1): 91–101.
   Web of Science ®Google Scholar
• Robinson, Peter N. 2012. “Deep Phenotyping for Precision Medicine.” Human Mutation 33 (5): 777–780.
   PubMed Web of Science ®Google Scholar
• Rockwell, Justin, Ian R. Grosse, Sundar Krishnamurty, and Jack C. Wileden. 2009. “ A Decision Support Ontology for Collaborative Decision Making in Engineering Design.” IEEE.
   Google Scholar
• Rodrigue, Hugo, and Mickaël Rivette. 2010. “An Assembly-Level Design for Additive Manufacturing Methodology.” IDMME-Virtual Concept. 2010. Bordeaux
   Google Scholar
• Rosse, Cornelius, and Jose L.V. Mejino. 2008. “The Foundational Model of Anatomy Ontology.” Anatomy Ontologies for Bioinformatics, 59–117.
   Google Scholar
• Ruffo, M., Chris Tuck, and R. Hague. 2006. “Cost Estimation for Rapid Manufacturing-Laser Sintering Production for Low to Medium Volumes.” Proceedings of the Institution of Mechanical Engineers, Part B: Journal of Engineering Manufacture 220 (9): 1417–1427.
   Web of Science ®Google Scholar
• Saeema, Ahmed, and Storga Mario. 2007. “Engineering Design Ontologies–Contrasting an Empirical and a Theoretical Approach.” Guidelines for a Decision Support Method Adapted to NPD Processes (2007).
   Google Scholar
• Schulz, Stefan, and Catalina Martínez-Costa. 2015. “Harmonizing SNOMED CT with BioTopLite: An Exercise in Principled Ontology Alignment.” In MedInfo, pp. 832–836. 2015.
   Google Scholar
• Shluzas, Aquino, M. Lauren, Martin Steinert, and Larry J. Leifer. 2011. “Designing to Maximize Value for Multiple Stakeholders: A Challenge to Med-Tech Innovation.” In DS 68-10: Proceedings of the 18th International Conference on Engineering Design (ICED 11), Impacting Society through Engineering Design, Vol. 10: Design Methods and Tools pt. 2, Lyngby/Copenhagen, Denmark, 15.-19.08. 2011, pp. 159–166. 2011.
   Google Scholar
• Sirin, Evren, Parsia Bijan, et al. 2004. “Pellet: An Owl Dl Reasoner.” In Proc. of the 2004 Description Logic Workshop (DL 2004), pp. 212–213.
   Google Scholar
• Slover, James D., Harry E. Rubash, Henrik Malchau, and Joseph A. Bosco. 2012. “Cost-Effectiveness Analysis of Custom Total Knee Cutting Blocks.” The Journal of Arthroplasty 27 (2): 180–185.
   PubMed Web of Science ®Google Scholar
• Smith, Barry, Michael Ashburner, Cornelius Rosse, Jonathan Bard, William Bug, Werner Ceusters, Louis J. Goldberg, Karen Eilbeck, Amelia Ireland, and Christopher J. Mungall. 2007. “The OBO Foundry: Coordinated Evolution of Ontologies to Support Biomedical Data Integration.” Nature Biotechnology 25 (11): 1251–1255.
   PubMed Web of Science ®Google Scholar
• Smith, Barry, and Werner Ceusters. 2015. “Aboutness: Towards Foundations for the Information Artifact Ontology.” In Proceedings of the Sixth International Conference on Biomedical Ontology (ICBO). CEUR vol. 1515. pp. 1–5
   Google Scholar
• Smith, Barry, Werner Ceusters, Bert Klagges, Jacob Köhler, Anand Kumar, Jane Lomax, Chris Mungall, Fabian Neuhaus, Alan L. Rector, and Cornelius Rosse. 2005. “Relations in Biomedical Ontologies.” Genome Biology 6 (5): R46.
   PubMed Web of Science ®Google Scholar
• Stearns, Michael Q., Colin Price, Kent A. Spackman, and Amy Y. Wang. 2001. “SNOMED Clinical Terms: Overview of the Development Process and Project Status.” American Medical Informatics Association.
   Web of Science ®Google Scholar
• Štorga, Mario, Mogens Myrup Andreasen, and Dorian Marjanović. 2010. “The Design Ontology: Foundation for the Design Knowledge Exchange and Management.” Journal of Engineering Design 21 (4): 427–454.
   Web of Science ®Google Scholar
• Thomas, Daniel. 2009. The Development of Design Rules for Selective Laser Melting (Doctoral dissertation, University of Wales).
   Google Scholar
• Wallace, Evan, Dimitris Kiritsis, Barry Smith, and Chris Will. 2018. “The Industrial Ontologies Foundry Proof-of-Concept Project.” APMS 2018: Advances in Production Management Systems. Smart Manufacturing for Industry 4.0 (IFIP International Conference on Advances in Production Management Systems, Vol. 536, 402–409). New York: Springer.
   Google Scholar
• Waran, Vicknes, Vairavan Narayanan, Ravindran Karuppiah, Sarah LF Owen, and Tipu Aziz. 2014. “Utility of Multimaterial 3D Printers in Creating Models with Pathological Entities to Enhance the Training Experience of Neurosurgeons.” Journal of Neurosurgery 120 (2): 489–492.
   PubMed Web of Science ®Google Scholar
• Wohlers, Terry, and Tim Gornet. 2011. “History of Additive Manufacturing.” Wohlers Report: Additive Manufacturing and 3D Printing State of the Industry Annual Worldwide Progress Report.
   Google Scholar
• Yang, Sheng, and Yaoyao Zhao. 2015. “Additive Manufacturing-Enabled Design Theory and Methodology: A Critical Review.” International Journal of Advanced Manufacturing Technology 80 (1-4): 327–342.
   Web of Science ®Google Scholar