Bioengineering options and strategies for the optimization of anaerobic digestion processes

References

• Weiland P. Biogas production: current state and perspectives. Appl Microbiol Biotechnol. 2011;85:849–860. doi: 10.1007/s00253-009-2246-7
   Web of Science ®Google Scholar
• Chan YJ, Chong MF, Law CL, Hassell DG. A review on anaerobic–aerobic treatment of industrial and municipal wastewater. Chem Eng J. 2009;155:1–18. doi: 10.1016/j.cej.2009.06.041
   Web of Science ®Google Scholar
• Parkin G, Owen W. Fundamentals of anaerobic digestion of wastewater sludges. J Environ Eng. 1986;112:867–920. doi: 10.1061/(ASCE)0733-9372(1986)112:5(867)
   Web of Science ®Google Scholar
• Sekiguchi Y, Kamagata Y, Harada H. Recent advances in methane fermentation technology. Curr Opin Biotechnol. 2001;12:277–282. doi: 10.1016/S0958-1669(00)00210-X
   PubMed Web of Science ®Google Scholar
• Mata-Alvarez J, Macé S, Llabrés P. Anaerobic digestion of organic solid wastes. An overview of research achievements and perspectives. Bioresour Technol. 2000;74:3–16.
   Web of Science ®Google Scholar
• Bouallagui H, Touhami Y, Ben Cheikh R, Hamdi M. Bioreactor performance in anaerobic digestion of fruit and vegetable wastes. Process Biochem. 2005;40:989–995. doi: 10.1016/j.procbio.2004.03.007
   Web of Science ®Google Scholar
• Bishop C, Shumway C. The economics of dairy anaerobic digestion with coproduct marketing. Appl Econ Perspect Policy. 2009;31:394–410.
   Google Scholar
• Kryvoruchko V, Machmüller A, Bodiroza V, Amon B, Amon T. Anaerobic digestion of by-products of sugar beet and starch potato processing. Biomass Bioenergy. 2009;33:620–627. doi: 10.1016/j.biombioe.2008.10.003
   Web of Science ®Google Scholar
• Clemens J, Trimborn M, Weiland P, Amon B. Mitigation of greenhouse gas emissions by anaerobic digestion of cattle slurry. Agric Ecosyst Environ. 2006;112:171–177. doi: 10.1016/j.agee.2005.08.016
   Web of Science ®Google Scholar
• Iacovidou E, Ohandja DG, Voulvoulis N. Food waste co-digestion with sewage sludge – realising its potential in the UK. J Environ Manage. 2012;112:267–274. doi: 10.1016/j.jenvman.2012.07.029
   PubMed Web of Science ®Google Scholar
• Ward AJ, Hobbs PJ, Holliman PJ, Jones DL. Optimisation of the anaerobic digestion of agricultural resources. Bioresour Technol. 2008;99:7928–7940. doi: 10.1016/j.biortech.2008.02.044
   PubMed Web of Science ®Google Scholar
• Ince O. Performance of a two-phase anaerobic digestion system when treating dairy wastewater. Water Res. 1998;32:2707–2713. doi: 10.1016/S0043-1354(98)00036-0
   Web of Science ®Google Scholar
• Demirer GN, Chen S. Two-phase anaerobic digestion of unscreened dairy manure. Process Biochem. 2005;40:3542–3549. doi: 10.1016/j.procbio.2005.03.062
   Web of Science ®Google Scholar
• Stroot PG, McMahon KD, Mackie RI, Raskin L. Anaerobic codigestion of municipal solid waste and biosolids under various mixing conditions. 1. Digester performance. Water Res. 2001;35:1804–1816. doi: 10.1016/S0043-1354(00)00439-5
   PubMed Web of Science ®Google Scholar
• Appels L, Baeyens J, Degrève J, Dewil R. Principles and potential of the anaerobic digestion of waste-activated sludge. Prog Energy Combust Sci. 2008;34:755–781. doi: 10.1016/j.pecs.2008.06.002
   Web of Science ®Google Scholar
• Bouallagui H, Marouani L, Hamdi M. Performances comparison between laboratory and full-scale anaerobic digesters treating a mixture of primary and waste activated sludge. Resour Conserv Recy. 2010;55:29–33. doi: 10.1016/j.resconrec.2010.06.012
   Web of Science ®Google Scholar
• Angelidaki I, Ahring BK, Ahring BK. Methods for increasing the biogas potential from the recalcitrant organic matter contained in manure. Water Sc Technol. 2000;41: 189–194.
   PubMed Web of Science ®Google Scholar
• Khanal SK, Grewell D, Sung S, van Leeuwen J. Ultrasound applications in wastewater sludge pretreatment: a review. Crit Rev Environ Sci Technol. 2007;37:277–313. doi: 10.1080/10643380600860249
   Web of Science ®Google Scholar
• Wang W, Hou H, Hu S, Gao X. Performance and stability improvements in anaerobic digestion of thermally hydrolyzed municipal biowaste by a biofilm system. Bioresour Technol. 2010;101:1715–1721. doi: 10.1016/j.biortech.2009.10.010
   PubMed Web of Science ®Google Scholar
• Apul OG, Sanin FD. Ultrasonic pretreatment and subsequent anaerobic digestion under different operational conditions. Bioresour Technol. 2010;101:8984–8992. doi: 10.1016/j.biortech.2010.06.128
   PubMed Web of Science ®Google Scholar
• Stafford DA. The effects of mixing and volatile fatty acid concentrations on anaerobic digester performance. Biomass. 1982;2:43–55. doi: 10.1016/0144-4565(82)90006-3
   Web of Science ®Google Scholar
• Zhang Y, Banks CJ. Co-digestion of the mechanically recovered organic fraction of municipal solid waste with slaughterhouse wastes. Biochem Eng J. 2012;68:129–137. doi: 10.1016/j.bej.2012.07.017
   Web of Science ®Google Scholar
• Zhang Y, Banks CJ, Heaven S. Co-digestion of source segregated domestic food waste to improve process stability. Bioresour Technol. 2012;114:168–178. doi: 10.1016/j.biortech.2012.03.040
   PubMed Web of Science ®Google Scholar
• Zhang Y, Zamudio Canas EM, Zhu Z, Linville JL, Chen S, He Q. Robustness of archaeal populations in anaerobic co-digestion of dairy and poultry wastes. Bioresour Technol. 2011;102(2):779–785. doi: 10.1016/j.biortech.2010.08.104
   PubMed Web of Science ®Google Scholar
• Siles JA, Martin MA, Chica AF, Martin A. Anaerobic co-digestion of glycerol and wastewater derived from biodiesel manufacturing. Bioresour Technol. 2010;101:6315–6321. doi: 10.1016/j.biortech.2010.03.042
   PubMed Web of Science ®Google Scholar
• Chen G, Zheng Z, Yang S, Fang C, Zou X, Zhang J. Improving conversion of Spartina alterniflora into biogas by co-digestion with cow feces. Fuel Process Technol. 2010;91:1416–1421. doi: 10.1016/j.fuproc.2010.05.015
   Web of Science ®Google Scholar
• Chen G, Zheng Z, Yang S, Fang C, Zou X, Luo Y. Experimental co-digestion of corn stalk and vermicompost to improve biogas production. Waste Manage. 2010;30:1834–1840. doi: 10.1016/j.wasman.2010.03.014
   PubMed Web of Science ®Google Scholar
• Callaghan FJ, Luecke K, Wase DA, Thayanithy K, Forster CF. Co-digestion of cattle slurry and waste milk under shock loading conditions. J Chem Technol Boitechnol. 1999;68:405–410. doi: 10.1002/(SICI)1097-4660(199704)68:4<405::AID-JCTB648>3.0.CO;2-X
   Web of Science ®Google Scholar
• Callaghan FJ, Wase DAJ, Thayanithy K, Forster CF. Continuous co-digestion of cattle slurry with fruit and vegetable wastes and chicken manure. Biomass Bioenergy. 2002;22:71–77. doi: 10.1016/S0961-9534(01)00057-5
   Web of Science ®Google Scholar
• Yen H.-W, Brune DE. Anaerobic co-digestion of algal sludge and waste paper to produce methane. Bioresour Technol. 2007;98:130–134. doi: 10.1016/j.biortech.2005.11.010
   PubMed Web of Science ®Google Scholar
• Wang H, Lehtomäki A, Tolvanen K, Puhakka J, Rintala J. Impact of crop species on bacterial community structure during anaerobic co-digestion of crops and cow manure. Bioresour Technol. 2009;100:2311–2315. doi: 10.1016/j.biortech.2008.10.040
   PubMed Web of Science ®Google Scholar
• Martin-Gonzalez L, Castro R, Pereira MA, Alves MM, Font X, Vicent T. Thermophilic co-digestion of organic fraction of municipal solid wastes with FOG wastes from a sewage treatment plant: reactor performance and microbial community monitoring. Bioresour Technol. 2011;102:4734–4741. doi: 10.1016/j.biortech.2011.01.060
   PubMed Web of Science ®Google Scholar
• Supaphol S, Jenkins SN, Intomo P, Waite IS, Donnell AG. Microbial community dynamics in mesophilic anaerobic co-digestion of mixed waste. Bioresour Technol. 2011;102:4021–4027. doi: 10.1016/j.biortech.2010.11.124
   PubMed Web of Science ®Google Scholar
• Ãlvarez JA, Otero L, Lema JM. A methodology for optimising feed composition for anaerobic co-digestion of agro-industrial wastes. Bioresour Technol. 2010;101: 1153–1158. doi: 10.1016/j.biortech.2009.09.061
   PubMed Web of Science ®Google Scholar
• McMahon KD, Stroot PG, Mackie RI, Raskin L. Anaerobic codigestion of municipal solid waste and biosolids under various mixing conditions II: microbial population dynamics. Water Res. 2001;35:1817–1827. doi: 10.1016/S0043-1354(00)00438-3
   PubMed Web of Science ®Google Scholar
• Kaparaju P, Buendia I, Ellegaard L, Angelidakia I. Effects of mixing on methane production during thermophilic anaerobic digestion of manure: lab-scale and pilot-scale studies. Bioresour Technol. 2008;99:4919–4928. doi: 10.1016/j.biortech.2007.09.015
   PubMed Web of Science ®Google Scholar
• Akarsubasi AT, Ince O, Kirdar B, Oz NA, Orhon D, Curtis TP, Head IM, Ince BK. Effect of wastewater composition on archaeal population diversity. Water Res. 2005;39:1576–1584. doi: 10.1016/j.watres.2004.12.041
   PubMed Web of Science ®Google Scholar
• Rincón B, Borja R, González JM, Portillo MC, Sáiz-Jiménez C. Influence of organic loading rate and hydraulic retention time on the performance, stability and microbial communities of one-stage anaerobic digestion of two-phase olive mill solid residue. Biochem Eng J. 2008;40:253–261. doi: 10.1016/j.bej.2007.12.019
   Web of Science ®Google Scholar
• Chen S, Zamudio Cañas EM, Zhang Y, Zhu Z, He Q. Impact of substrate overloading on archaeal populations in anaerobic digestion of animal waste. J Appl Microbiol. 2012;113:1371–1379. doi: 10.1111/jam.12001
   PubMed Web of Science ®Google Scholar
• Gomez E, Martin J, Michel FC. Effects of organic loading rate on reactor performance and archaeal community structure in mesophilic anaerobic digesters treating municipal sewage sludge. Waste Manage Res. 2011;29: 1117–1123. doi: 10.1177/0734242X11417985
   PubMed Web of Science ®Google Scholar
• Bialek K, Kumar A, Mahony T, Lens PNL, O'Flaherty V. Microbial community structure and dynamics in anaerobic fluidized-bed and granular sludge-bed reactors: influence of operational temperature and reactor configuration. Microbl Biotechnol. 2012;5:738–752. doi: 10.1111/j.1751-7915.2012.00364.x
   PubMed Web of Science ®Google Scholar
• Fernández AS, Hashsham SA, Dollhopf SL, Raskin L, Glagoleva O, Dazzo FB, Hickey RF, Criddle CS, Tiedje JM. Flexible community structure correlates with stable community function in methanogenic bioreactor communities perturbed by glucose. Appl Environ Microbiol. 2000;66:4058–4067. doi: 10.1128/AEM.66.9.4058-4067.2000
   PubMed Web of Science ®Google Scholar
• Fernández A, Huang S, Seston S, Xing J, Hickey R, Criddle C, Tiedje J. How stable is stable? Function versus community composition. Appl Environ Microbiol. 1999;65:3697–3697.
   PubMed Web of Science ®Google Scholar
• Kaewpipat K, GradyJr CP. Microbial population dynamics in laboratory-scale activated sludge reactors. Water Sci Technol. 2002;46:19–27.
   PubMed Web of Science ®Google Scholar
• Zumstein E, Moletta R, Godon J.-J. Examination of two years of community dynamics in an anaerobic bioreactor using fluorescence polymerase chain reaction (PCR) single-strand conformation polymorphism analysis. Environ Microbiol. 2000;2:69–78. doi: 10.1046/j.1462-2920.2000.00072.x
   PubMed Web of Science ®Google Scholar
• Wang X, Wen X, Criddle C, Yan H, Zhang Y, Ding K. Bacterial community dynamics in two full-scale wastewater treatment systems with functional stability. J Appl Microbiol. 2010;109:1218–1226. doi: 10.1111/j.1365-2672.2010.04742.x
   PubMed Web of Science ®Google Scholar
• Wang X, Wen X, Yan H, Ding K, Zhao F, Hu M. Bacterial community dynamics in a functionally stable pilot-scale wastewater treatment plant. Bioresour Technol. 2011;102:2352–2357. doi: 10.1016/j.biortech.2010.10.095
   PubMed Web of Science ®Google Scholar
• Feng XM, Karlsson A, Svensson BH, Bertilsson S. Impact of trace element addition on biogas production from food industrial waste – linking process to microbial communities. FEMS Microbiol Ecol. 2011;74:226–240. doi: 10.1111/j.1574-6941.2010.00932.x
   Web of Science ®Google Scholar
• Blume F, Bergmann I, Nettmann E, Schelle H, Rehde G, Mundt K, Klocke M. Methanogenic population dynamics during semi-continuous biogas fermentation and acidification by overloading. J Appl Microbiol. 2010;109: 441–450.
   PubMed Web of Science ®Google Scholar
• Demirel B, Scherer P. The roles of acetotrophic and hydrogenotrophic methanogens during anaerobic conversion of biomass to methane: a review. Rev Sci Biotechnol. 2008;7:173–190. doi: 10.1007/s11157-008-9131-1
   Google Scholar
• Talbot G, Topp E, Palin MF, Massé D. Evaluation of molecular methods used for establishing the interactions and functions of microorganisms in anaerobic bioreactors. Water Res. 2008;42:513–537. doi: 10.1016/j.watres.2007.08.003
   PubMed Web of Science ®Google Scholar
• Kröber M, Bekel T, Diaz NN, Goesmann A, Jaenicke S, Krause L, Miller D, Runte KJ, Viehöver P, Pühler A, Schlüter A. Phylogenetic characterization of a biogas plant microbial community integrating clone library 16S-rDNA sequences and metagenome sequence data obtained by 454-pyrosequencing. J Biotechnol. 2009;142:38–49. doi: 10.1016/j.jbiotec.2009.02.010
   PubMed Web of Science ®Google Scholar
• Schlüter A, Bekel T, Diaz NN, Dondrup M, Eichenlaub R, Gartemann K.-H, Krahn I, Krause L, Krömeke H, Kruse O, Mussgnug JH, Neuweger H, Niehaus K, Pühler A, Runte KJ, Szczepanowski R, Tauch A, Tilker A, Viehöver P, Goesmann A. The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology. J Biotechnol. 2008;136:77–90. doi: 10.1016/j.jbiotec.2008.05.008
   PubMed Web of Science ®Google Scholar
• Werner JJ, Knights D, Garcia ML, Scalfone NB, Smith S, Yarasheski K, Cummings TA, Beers AR, Knight R, Angenent LT. Bacterial community structures are unique and resilient in full-scale bioenergy systems. Proc Natl Acad Sci US A. 2012;108:4158–4163. doi: 10.1073/pnas.1015676108
   Web of Science ®Google Scholar
• Braber K. Anaerobic digestion of municipal solid waste: a modern waste disposal option on the verge of breakthrough. Biomass Bioenergy. 1995;9:365–376. doi: 10.1016/0961-9534(95)00103-4
   Web of Science ®Google Scholar
• O'Flaherty V, Collins G, Mahony T, se. The microbiology and biochemistry of anaerobic bioreactors with relevance to domestic sewage treatment. Rev Environ Sci Biotechnol. 2006;5:39–55. doi: 10.1007/s11157-005-5478-8
   Google Scholar
• Hori T, Haruta S, Ueno Y, Ishii M, Igarashi Y. Dynamic transition of a methanogenic population in response to the concentration of volatile fatty acids in a thermophilic anaerobic digester. Appl Environ Microbiol. 2006;72:1623–1630. doi: 10.1128/AEM.72.2.1623-1630.2006
   PubMed Web of Science ®Google Scholar
• Garcia J.-L, Patel BKC, Ollivier B. Taxonomic, phylogenetic, and ecological diversity of methanogenic archaea. Anaerobe. 2000;6:205–226. doi: 10.1006/anae.2000.0345
   PubMed Web of Science ®Google Scholar
• Van Den Berg L, Lamb KA, Murray WD, Armstrong DW. Effects of sulphate, iorn and hydrogen on the microbiological conversion of acetic acid to methane. J Appl Bacteriol. 1980;48:437–447. doi: 10.1111/j.1365-2672.1980.tb01033.x
   Google Scholar
• Conrad R. Contribution of hydrogen to methane production and control of hydrogen concentrations in methanogenic soils and sediments. FEMS Microbiol Ecol. 1999;28: 193–202. doi: 10.1111/j.1574-6941.1999.tb00575.x
   Web of Science ®Google Scholar
• Schnürer A, Zellner G, Svensson BH. Mesophilic syntrophic acetate oxidation during methane formation in biogas reactors. FEMS Microbiol Ecol. 1999;29:249–261. doi: 10.1016/S0168-6496(99)00016-1
   Web of Science ®Google Scholar
• Zhang B, Cai WM, He PJ. Influence of lactic acid on the two-phase anaerobic digestion of kitchen wastes. J Environ Sci. 2007;19:244–249. doi: 10.1016/S1001-0742(07)60040-0
   Web of Science ®Google Scholar
• Qu X, Mazéas L, Vavilin VA, Epissard J, Lemunier M, Mouchel J.-M, He P.-j, Bouchez T. Combined monitoring of changes in δ 13CH4 and archaeal community structure during mesophilic methanization of municipal solid waste. FEMS Microbiol Ecol. 2009;68:236–245. doi: 10.1111/j.1574-6941.2009.00661.x
   PubMed Web of Science ®Google Scholar
• Wang Y, Zhang Y, Wang J, Meng L. Effects of volatile fatty acid concentrations on methane yield and methanogenic bacteria. Biomass Bioenergy. 2009;33:848–853. doi: 10.1016/j.biombioe.2009.01.007
   Web of Science ®Google Scholar
• Laukenmann S, Polag D, Heuwinkel H, Greule M, Gronauer A, Lelieveld J, Keppler F. Identification of methanogenic pathways in anaerobic digesters using stable carbon isotopes. Eng Life Sci. 2011;10:509–514. doi: 10.1002/elsc.201000074
   Web of Science ®Google Scholar
• Allison SD, Martiny JBH. Resistance, resilience, and redundancy in microbial communities. Proc Natl Acad Sci. 2008;105:11512–11519. doi: 10.1073/pnas.0801925105
   PubMed Web of Science ®Google Scholar
• Wang Q, Garrity GM, Tiedje JM, Cole JR. Na&inodot;¨ve bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol. 2007;73:5261–5267. doi: 10.1128/AEM.00062-07
   PubMed Web of Science ®Google Scholar
• Thauer RK, Kaster A.-K, Seedorf H, Buckel W, Hedderich R. Methanogenic archaea: ecologically relevant differences in energy conservation. Nat Rev Microbiol. 2008;6: 579–591. doi: 10.1038/nrmicro1931
   PubMed Web of Science ®Google Scholar
• Luo H, Sun Z, Arndt W, Shi J, Friedman R, Tang J. Gene order phylogeny and the evolution of methanogens. PLoS ONE. 2009;4:e6069. doi: 10.1371/journal.pone.0006069
   Google Scholar
• Liu Y, Whitman WB. Metabolic, phylogenetic, and ecological diversity of the methanogenic archaea. Ann New York Acad Sci. 2008;1125:171–189. doi: 10.1196/annals.1419.019
   PubMed Web of Science ®Google Scholar
• Delbès C, Moletta R, Godon J.-J. Bacterial and archaeal 16S rDNA and 16S rRNA dynamics during an acetate crisis in an anaerobic digestor ecosystem. FEMS Microbiol Ecol. 2001;35:19–26. doi: 10.1016/S0168-6496(00)00107-0
   PubMed Web of Science ®Google Scholar
• Leclerc M, Delbes C, Moletta R, Godon J.-J. Single strand conformation polymorphism monitoring of 16S rDNA Archaea during start-up of an anaerobic digester. FEMS Microbiol Ecol. 2001;34:213–220. doi: 10.1111/j.1574-6941.2001.tb00772.x
   PubMed Web of Science ®Google Scholar
• Lee C, Kim J, Shin SG, Hwang S. Monitoring bacterial and archaeal community shifts in a mesophilic anaerobic batch reactor treating a high-strength organic wastewater. FEMS Microbiol Ecol. 2008;65:544–554. doi: 10.1111/j.1574-6941.2008.00530.x
   PubMed Web of Science ®Google Scholar
• Xia Y, Cai L, Zhang T, Fang HHP. Effects of substrate loading and co-substrates on thermophilic anaerobic conversion of microcrystalline cellulose and microbial communities revealed using high-throughput sequencing. Int J Hydrogen Energy. 2012;37:13652–13659. doi: 10.1016/j.ijhydene.2012.02.079
   Web of Science ®Google Scholar
• Nelson MC, Morrison M, Schanbacher F, Yu Z. Shifts in microbial community structure of granular and liquid biomass in response to changes to infeed and digester design in anaerobic digesters receiving food-processing wastes. Bioresour Technol. 2012;107:135–143. doi: 10.1016/j.biortech.2011.12.070
   PubMed Web of Science ®Google Scholar
• Shen P, Zhang J, Zhang J, Jiang C, Tang X, Li J, Zhang M, Wu B. Changes in microbial community structure in two anaerobic systems to treat bagasse spraying wastewater with and without addition of molasses alcohol wastewater. Bioresour Technol. 2013;131:333–340. doi: 10.1016/j.biortech.2012.12.147
   PubMed Web of Science ®Google Scholar
• Syutsubo K, Nagaya Y, Sakai S, Miya A. Behavior of cellulose-degrading bacteria in thermophilic anaerobic digestion process. Water Sci Technol. 2005;52: 79–84.
   PubMed Web of Science ®Google Scholar
• Tang Y, Shigematsu T, Morimura S, Kida K. Microbial community analysis of mesophilic anaerobic protein degradation process using bovine serum albumin (BSA)-fed continuous cultivation. J Biosci Bioeng. 2005;99: 150–164. doi: 10.1263/jbb.99.150
   PubMed Web of Science ®Google Scholar
• Ziganshin A, Schmidt T, Scholwin F, Il'inskaya O, Harms H, Kleinsteuber S. Bacteria and archaea involved in anaerobic digestion of distillers grains with solubles. Appl Microbiol Biotechnol. 2011;89:2039–2052. doi: 10.1007/s00253-010-2981-9
   PubMed Web of Science ®Google Scholar
• Kampmann K, Ratering S, Kramer I, Schmidt M, Zerr W, Schnell S. Unexpected stability of Bacteroidetes and Firmicutes communities in laboratory biogas reactors fed with different defined substrates. Appl Environ Microbiol. 2012;78:2106–2119. doi: 10.1128/AEM.06394-11
   PubMed Web of Science ®Google Scholar
• Sousa DZ, Pereira MA, Alves JI, Smidt H, Stams AJM, Alves MM. Anaerobic microbial LCFA degradation in bioreactors. Water Sci Technol. 2008;57:439–444. doi: 10.2166/wst.2008.090
   PubMed Web of Science ®Google Scholar
• Sousa DZ, Pereira MA, Stams AJM, Alves MM, Smidt H. Microbial communities involved in anaerobic degradation of unsaturated or saturated long-chain fatty acids. Appl Environ Microbiol. 2007;73:1054–1064. doi: 10.1128/AEM.01723-06
   PubMed Web of Science ®Google Scholar
• Cirne DG, Paloumet X, Bjornsson L, Alves MM, Mattiasson B. Anaerobic digestion of lipid-rich waste – effects of lipid concentration. Renew Energy. 2007;32:965–975. doi: 10.1016/j.renene.2006.04.003
   Web of Science ®Google Scholar
• Xu Q, Gao W, Ding S.-Y, Kenig R, Shoham Y, A.Bayer E, Lamed R. The cellulosome system of Acetivibrio cellulolyticus includes a novel type of adaptor protein and a cell surface anchoring protein. J Bacteriol. 2003;185: 4548–4557. doi: 10.1128/JB.185.15.4548-4557.2003
   PubMed Web of Science ®Google Scholar
• Suen G, Stevenson DM, Bruce DC, Chertkov O, Copeland A, Cheng J.-F, Detter C, Detter JC, Goodwin LA, Han CS, Hauser LJ, Ivanova NN, Kyrpides NC, Land ML, Lapidus A, Lucas S, Ovchinnikova G, Pitluck S, Tapia R, Woyke T, Boyum J, Mead D, Weimer2 PJ. Complete genome of the cellulolytic ruminal bacterium Ruminococcus albus 7. J Bacteriol. 2011;193:5574–5575. doi: 10.1128/JB.05621-11
   PubMed Web of Science ®Google Scholar
• Shin SG, Han G, Lim J, Lee C, Hwang S. A comprehensive microbial insight into two-stage anaerobic digestion of food waste-recycling wastewater. Water Res. 2010;44: 4838–4849. doi: 10.1016/j.watres.2010.07.019
   PubMed Web of Science ®Google Scholar
• McMahon KD, Zheng D, Stams AJM, Mackie RI, Raskin L. Microbial population dynamics during startup and overload conditions of anaerobic digesters treating municipal solid waste and sewage sludge. Biotechnol Bioeng. 2004;7:823–834. doi: 10.1002/bit.20192
   Web of Science ®Google Scholar
• Ariesyady HD, Ito T, Okabe S. Functional bacterial and archaeal community structures of major trophic groups in a full-scale anaerobic sludge digester. Water Res. 2007;41:1554–1568. doi: 10.1016/j.watres.2006.12.036
   PubMed Web of Science ®Google Scholar
• Ariesyady H, Ito T, Yoshiguchi K, Okabe S. Phylogenetic and functional diversity of propionate-oxidizing bacteria in an anaerobic digester sludge. Appl Microbiol Biotechnol. 2007;75:673–683. doi: 10.1007/s00253-007-0842-y
   PubMed Web of Science ®Google Scholar
• Sekiguchi Y, Kamagata Y, Nakamura K, Ohashi A, Harada H. Syntrophothermus lipocalidus gen. nov., sp. nov., a novel thermophilic, syntrophic, fatty-acid-oxidizing anaerobe which utilizes isobutyrate. Int J Syst Evol Microbiol. 2000;50:771–779. doi: 10.1099/00207713-50-2-771
   PubMed Web of Science ®Google Scholar
• Sekiguchi Y, Yamada T, Hanada S, Ohashi A, Harada H, Kamagata Y. Anaerolinea thermophila gen. nov., sp. nov. and Caldilinea aerophila gen. nov., sp. nov., novel filamentous thermophiles that represent a previously uncultured lineage of the domain bacteria at the subphylum level. Int J Syst Evol Microbiol. 2003;53:1843–1851. doi: 10.1099/ijs.0.02699-0
   PubMed Web of Science ®Google Scholar
• Yamada T, Imachi H, Ohashi A, Harada H, Hanada S, Kamagata Y, Sekiguchi Y. Bellilinea caldifistulae gen. nov., sp. nov and Longilinea arvoryzae gen. nov., sp. nov., strictly anaerobic, filamentous bacteria of the phylum Chloroflexi isolated from methanogenic propionate-degrading consortia. Int J Syst Evol Microbiol. 2007;57: 2299–2306. doi: 10.1099/ijs.0.65098-0
   PubMed Web of Science ®Google Scholar
• Yamada T, Sekiguchi Y. Cultivation of uncultured Chloroflexi subphyla: significance and ecophysiology of formerly uncultured Chloroflexi ‘subphylum i’ with natural and biotechnological relevance. Microbes Environ. 2009;24:205–216. doi: 10.1264/jsme2.ME09151S
   PubMed Web of Science ®Google Scholar
• Ganidi N, Tyrrel S, Cartmell E. Anaerobic digestion foaming causes – ‘a review’. Bioresour Technol. 2009;100: 5546–5554. doi: 10.1016/j.biortech.2009.06.024
   PubMed Web of Science ®Google Scholar
• Nielsen PH, Kragelund C, Seviour RJ, Nielsen JL. Identity and ecophysiology of filamentous bacteria in activated sludge. FEMS Microbiol Rev. 2009;33:969–998. doi: 10.1111/j.1574-6976.2009.00186.x
   PubMed Web of Science ®Google Scholar
• Rossetti S, Tomei MC, Nielsen PH, Tandoi V. Microthrix parvicella, a filamentous bacterium causing bulking and foaming in activated sludge systems: a review of current knowledge. FEMS Microbiol Rev. 2005;29: 49–64. doi: 10.1016/j.femsre.2004.09.005
   PubMed Web of Science ®Google Scholar
• Seviour R, Kragelund C, Kong Y, Eales K, Nielsen J, Nielsen P. Ecophysiology of the actinobacteria in activated sludge systems. Antonie van Leeuwenhoek. 2008;94: 21–33. doi: 10.1007/s10482-008-9226-2
   PubMed Web of Science ®Google Scholar
• Shen F.-T, Huang H.-R, Arun AB, Lu H.-L, Lin T.-C, Rekha PD, Young C.-C. Detection of filamentous genus Gordonia in foam samples using genus-specific primers combined with PCRdenaturing gradient gel electrophoresis analysis. Can J Microbiol. 2007;53:768–774. doi: 10.1139/W07-038
   PubMed Web of Science ®Google Scholar
• Baena S, Fardeau ML, Labat M, Ollivier B, Thomas P, Garcia JL, Patel BKC. Aminobacterium colombiense gen. nov. sp. nov., an amino acid-degrading anaerobe isolated from anaerobic sludge. Anaerobe. 1998;4: 241–250. doi: 10.1006/anae.1998.0170
   PubMed Web of Science ®Google Scholar
• Diaz C, Baena S, Fardeau M.-L, Patel BKC. Aminiphilus circumscriptus gen. nov., sp. nov., an anaerobic amino-acid-degrading bacterium from an upflow anaerobic sludge reactor. Int J Syst Evol Microbiol. 2007;57: 1914–1918. doi: 10.1099/ijs.0.63614-0
   PubMed Web of Science ®Google Scholar
• Menes RJ, Muxí L. Anaerobaculum mobile sp. nov., a novel anaerobic, moderately thermophilic, peptide-fermenting bacterium that uses crotonate as an electron acceptor, and emended description of the genus Anaerobaculum. Int J Syst Evol Microbiol. 2002;52:157–164.
   PubMed Web of Science ®Google Scholar
• Vartoukian SR, Palmer RM, Wade WG. The division ‘Synergistes’. Anaerobe. 2007;13:99–106. doi: 10.1016/j.anaerobe.2007.05.004
   PubMed Web of Science ®Google Scholar
• Wijekoon KC, Visvanathan C, Abeynayaka A. Effect of organic loading rate on VFA production, organic matter removal and microbial activity of a two-stage thermophilic anaerobic membrane bioreactor. Bioresour Technol. 2011;102:5353–5360. doi: 10.1016/j.biortech.2010.12.081
   PubMed Web of Science ®Google Scholar
• Krakat N, Schmidt S, Scherer P. Potential impact of process parameters upon the bacterial diversity in the mesophilic anaerobic digestion of beet silage. Bioresour Technol. 2011;102:5692–5701. doi: 10.1016/j.biortech.2011.02.108
   PubMed Web of Science ®Google Scholar
• Montero B, Garcia-Morales JL, Sales D, Solera R. Evolution of microorganisms in thermophilic-dry anaerobic digestion. Bioresour Technol. 2008;99:3233–3243. doi: 10.1016/j.biortech.2007.05.063
   PubMed Web of Science ®Google Scholar
• Lerm S, Kleybocker A, Miethling-Graff R, Alawi M, Kasina M, Liebrich M, Wurdemann H. Archaeal community composition affects the function of anaerobic co-digesters in response to organic overload. Waste Manage. 2012;32:389–399. doi: 10.1016/j.wasman.2011.11.013
   PubMed Web of Science ®Google Scholar
• Karakashev D, Batstone DJ, Angelidaki I. Influence of environmental conditions on methanogenic compositions in anaerobic biogas reactors. Appl Environ Microbiol. 2005;71:331–338. doi: 10.1128/AEM.71.1.331-338.2005
   PubMed Web of Science ®Google Scholar
• Karakashev D, Batstone DJ, Trably E, Angelidaki I. Acetate oxidation is the dominant methanogenic pathway from acetate in the absence of methanosaetaceae. Appl Environ Microbiol. 2006;72:5138–5141. doi: 10.1128/AEM.00489-06
   PubMed Web of Science ®Google Scholar
• Griffin ME, McMahon KD, Mackie RI, Raskin L. Methanogenic population dynamics during start-up of anaerobic digesters treating municipal solid waste and biosolids. Biotechnol Bioeng. 1998;57:342–355. doi: 10.1002/(SICI)1097-0290(19980205)57:3<342::AID-BIT11>3.0.CO;2-I
   PubMed Web of Science ®Google Scholar
• Ros M, Franke-Whittle IH, Morales AB, Insam H, Ayuso M, Pascual JA. Archaeal community dynamics and abiotic characteristics in a mesophilic anaerobic co-digestion process treating fruit and vegetable processing waste sludge with chopped fresh artichoke waste. Bioresour Technol. 2013;136:1–7. doi: 10.1016/j.biortech.2013.02.058
   PubMed Web of Science ®Google Scholar
• Delbès C, Moletta R, Godon J.-J. Monitoring of activity dynamics of an anaerobic digester bacterial community using 16S rRNA polymerase chain reaction-single-strand conformation polymorphism analysis. Environ Microbiol. 2000;2:506–515. doi: 10.1046/j.1462-2920.2000.00132.x
   PubMed Web of Science ®Google Scholar
• Demirel B, Yenig uuml, n O. The effects of change in volatile fatty acid (VFA) composition on methanogenic upflow filter reactor (UFAF) performance. Environ Technol. 2002;23:1179–1187. doi: 10.1080/09593332308618336
   PubMed Web of Science ®Google Scholar
• Angelidaki I, Ahring BK. Thermophilic anaerobic digestion of livestock waste: the effect of ammonia. Appl Microbiol Biotechnol. 1993;38:560–564.
   Web of Science ®Google Scholar
• Angenent LT, Sung S, Raskin L. Methanogenic population dynamics during startup of a full-scale anaerobic sequencing batch reactor treating swine waste. Water Res. 2002;36:4648–4654. doi: 10.1016/S0043-1354(02)00199-9
   PubMed Web of Science ®Google Scholar
• Borja R, Sanchez E, Weiland P. Influence of ammonia concentration on thermophilic anaerobic digestion of cattle manure in upflow anaerobic sludge blanket (UASB) reactors. Process Biochem. 1996;31:477–483. doi: 10.1016/0032-9592(95)00099-2
   Web of Science ®Google Scholar
• Buenda IM, Fernández FJ, Villaseaor J, Rodraguez L. Feasibility of anaerobic co-digestion as a treatment option of meat industry wastes. Bioresour Technol. 2009;100: 1903–1909. doi: 10.1016/j.biortech.2008.10.013
   PubMed Web of Science ®Google Scholar
• Hansen KH, Angelidaki I, Ahring BKR. Anaerobic digestion of swine manure: inhibition by ammonia. Water Res. 1998;32:5–12. doi: 10.1016/S0043-1354(97)00201-7
   Web of Science ®Google Scholar
• Ripley LE, Boyle WC, Converse JC. Improved alkalimetric monitoring for anaerobic digestion of high-strength waste. J Water Pollut Control Fed. 1986;58:406.
   Web of Science ®Google Scholar
• Calli B, Mertoglu B, Inanc B, Yenigun O. Methanogenic diversity in anaerobic bioreactors under extremely high ammonia levels. Enzyme Microb Technol. 2005;37: 448–455. doi: 10.1016/j.enzmictec.2005.03.013
   Web of Science ®Google Scholar
• Xia Y, Massé DI, McAllister TA, Kong Y, Seviour R, Beaulieu C. Identity and diversity of archaeal communities during anaerobic co-digestion of chicken feathers and other animal wastes. Bioresour Technol. 2011;110: 111–119. doi: 10.1016/j.biortech.2012.01.107
   Web of Science ®Google Scholar
• Calli B, Mertoglu B, Inanc B, Yenigun O. Community changes during start-up in methanogenic bioreactors exposed to increasing levels of ammonia. Environ Technol. 2005;26:85–91. doi: 10.1080/09593332608618585
   PubMed Web of Science ®Google Scholar
• Chen Y, Cheng JJ, Creamer KS. Inhibition of anaerobic digestion process: a review. Bioresour Technol. 2008;99:4044–4064. doi: 10.1016/j.biortech.2007.01.057
   PubMed Web of Science ®Google Scholar
• Koster IW, Lettinga G. Anaerobic digestion at extreme ammonia concentrations. Biol Wastes. 1988;25:51–59. doi: 10.1016/0269-7483(88)90127-9
   Web of Science ®Google Scholar
• Callander IJ, Barford JP. Precipitation, chelation, and the availability of metals as nutrients in anaerobic digestion. I. Methodology. Biotechnol Bioeng. 1983;25:1947–1957. doi: 10.1002/bit.260250805
   PubMed Web of Science ®Google Scholar
• Callander IJ, Barford JP. Precipitation, chelation, and the availability of metals as nutrients in anaerobic digestion. II. Applications. Biotechnol Bioeng. 1983;25:1959–1972. doi: 10.1002/bit.260250806
   PubMed Web of Science ®Google Scholar
• Murray WD, Van Den Berg L. Effects of nickel, cobalt, and molybdenum on performance of methanogenic fixed-film reactors. Appl Environ Microbiol. 1981;42:502–505.
   PubMed Web of Science ®Google Scholar
• Hoban DJ, Van Den Berg L. Effect of iron on conversion of acetic acid to methane during methanogenic fermentations. J Appl Bacteriol. 1979;47:153–159. doi: 10.1111/j.1365-2672.1979.tb01179.x
   PubMedGoogle Scholar
• Raju NR, Devi SS, Nand K. Influence of trace elements on biogas production from mango processing waste in 1.5 m3 KVIC digesters. Biotechnol Lett. 1991;13:461–464. doi: 10.1007/BF01031002
   Web of Science ®Google Scholar
• spinosa A, Rosas L, Ilangovan K, Noyola A. Effect of trace metals on the anaerobic degradation of volatile fatty acids in molasses stillage. Water Sci Technol. 1995;32: 121–129. doi: 10.1016/0273-1223(96)00146-1
   Web of Science ®Google Scholar
• Wilkie A, Goto M, Bordeaux FM, Smith PH. Enhancement of anaerobic methanogenesis from napiergrass by addition of micronutrients. Biomass. 1986;11:135–146. doi: 10.1016/0144-4565(86)90043-0
   Web of Science ®Google Scholar
• Jarvis Ã, Nordberg Ã, Jarlsvik T, Mathisen B, Svensson BH. Improvement of a grass-clover silage-fed biogas process by the addition of cobalt. Biomass Bioenergy. 1997;12: 453–460. doi: 10.1016/S0961-9534(97)00015-9
   Web of Science ®Google Scholar
• Zandvoort MH, van Hullebusch ED, Golubnic S, Gieteling J, Lens PNL. Induction of cobalt limitation in methanol-fed UASB reactors. J Chem Technol Biotechnol. 2006;81:1486–1495. doi: 10.1002/jctb.1559
   Web of Science ®Google Scholar
• Facchin V, Cavinato C, Fatone F, Pavan P, Cecchi F, Bolzonella D. Effect of trace element supplementation on the mesophilic anaerobic digestion of foodwaste in batch trials: the influence of inoculum origin. Biochem Eng J. 2013;70:71–77. doi: 10.1016/j.bej.2012.10.004
   Web of Science ®Google Scholar
• Zhang Y, Yan L, Chi L, Long X, Mei Z, Zhang Z. Startup and operation of anaerobic EGSB reactor treating palm oil mill effluent. J Environ Sci. 2008;20:658–663. doi: 10.1016/S1001-0742(08)62109-9
   Web of Science ®Google Scholar
• Pobeheim H, Munk B, Johansson J, Guebitz GM. Influence of trace elements on methane formation from a synthetic model substrate for maize silage. Bioresour Technol. 2010;101:836–839. doi: 10.1016/j.biortech.2009.08.076
   PubMed Web of Science ®Google Scholar
• Kim M, Ahn Y.-H, Speece RE. Comparative process stability and efficiency of anaerobic digestion; mesophilic vs. thermophilic. Water Res. 2002;36:4369–4385. doi: 10.1016/S0043-1354(02)00147-1
   PubMed Web of Science ®Google Scholar
• Jiang Y, Heaven S, Banks CJ. Strategies for stable anaerobic digestion of vegetable waste. Renew Energy. 2012;44: 206–214. doi: 10.1016/j.renene.2012.01.012
   Web of Science ®Google Scholar
• Climenhaga MA, Banks CJ. Anaerobic digestion of catering wastes: effect of micronutrients and solids retention time. Water Sci Technol. 2008;57(5):687–692. doi: 10.2166/wst.2008.092
   PubMed Web of Science ®Google Scholar
• Zhang L, Jahng D. Long-term anaerobic digestion of food waste stabilized by trace elements. Waste Manage. 2012;32:1509–1515. doi: 10.1016/j.wasman.2012.03.015
   PubMed Web of Science ®Google Scholar
• Banks CJ, Zhang Y, Jiang Y, Heaven S. Trace element requirements for stable food waste digestion at elevated ammonia concentrations. Bioresour Technol. 2012;104:127–135. doi: 10.1016/j.biortech.2011.10.068
   PubMed Web of Science ®Google Scholar
• Takashima M, Speece RE, Parkin GF. Mineral requirements for methane fermentation. Crit Rev Environ Control. 1990;19:465–479. doi: 10.1080/10643389009388378
   Web of Science ®Google Scholar
• Demirel B, Scherer P. Trace element requirements of agricultural biogas digesters during biological conversion of renewable biomass to methane. Biomass Bioenergy. 2011;35:992–998. doi: 10.1016/j.biombioe.2010.12.022
   Web of Science ®Google Scholar
• Fermoso FG, Collins G, Bartacek J, O'Flaherty V, Lens P. Acidification of methanol-fed anaerobic granular sludge bioreactors by cobalt deprivation: induction and microbial community dynamics. Biotechnol Bioeng. 2008;99:49–58. doi: 10.1002/bit.21528
   PubMed Web of Science ®Google Scholar
• Deflaun MF, Steffan R. Bioaugmentation. In: Bitton G, editor. Encyclopedia of environmental microbiology. New York: Wiley-Interscience; 2002. p. 434–442.
   Google Scholar
• Rittmann BE, Whiteman R. Bioaugmentation: a coming of age. Water Qual Int. 1994;1:16.
   Google Scholar
• El Fantroussi S, Agathos SN. Is bioaugmentation a feasible strategy for pollutant removal and site remediation? Curr Opin Microbiol. 2005;8:268–275. doi: 10.1016/j.mib.2005.04.011
   PubMed Web of Science ®Google Scholar
• Gentry TJ, Rensing C, Pepper IL. New approaches for bioaugmentation as a remediation technology. Crit Rev Environ Sci Technol. 2004;34:447–494. doi: 10.1080/10643380490452362
   Web of Science ®Google Scholar
• Vogel TM. Bioaugmentation as a soil bioremediation approach. Curr Opin Biotechnol. 1996;7:311–316. doi: 10.1016/S0958-1669(96)80036-X
   PubMed Web of Science ®Google Scholar
• Schauer-Gimenez AE, Zitomer DH, Maki JS, Struble CA. Bioaugmentation for improved recovery of anaerobic digesters after toxicant exposure. Water Res. 2010;44:3555–3564. doi: 10.1016/j.watres.2010.03.037
   PubMed Web of Science ®Google Scholar
• Satoh H, Okabe S, Yamaguchi Y, Watanabe Y. Evaluation of the impact of bioaugmentation and biostimulation by in situ hybridization and microelectrode. Water Res. 2003;37:2206–2216. doi: 10.1016/S0043-1354(02)00617-6
   PubMed Web of Science ®Google Scholar
• Limbergen HV, Top EM, Verstraete W. Bioaugmentation in activated sludge: current features and future perspectives. Appl Microbiol Biotechnol. 1998;50:16–23. doi: 10.1007/s002530051250
   Web of Science ®Google Scholar
• Nancharaiah YV, Joshi HM, Hausner M, Venugopalan VP. Bioaugmentation of aerobic microbial granules with Pseudomonas putida carrying TOL plasmid. Chemosphere. 2008;71:30–35. doi: 10.1016/j.chemosphere.2007.10.062
   PubMed Web of Science ®Google Scholar
• Westerholm M, Leven L, Schnuer A. Bioaugmentation of syntrophic acetate-oxidizing culture in biogas reactors exposed to increasing levels of ammonia. Appl Environ Microbiol. 2012;78:7619–7625. doi: 10.1128/AEM.01637-12
   PubMed Web of Science ®Google Scholar
• Savant D, Ranade D. Application of Methanobrevibacter acididurans in anaerobic digestion. Water Sci Technol. 2004;50:109–114.
   PubMed Web of Science ®Google Scholar
• Savant DV, Shouche YS, Prakash S, Ranade DR. Methanobrevibacter acididurans sp. nov., a novel methanogen from a sour anaerobic digester. Int J Syst Evol Microbiol. 2002;52:1081–1087. doi: 10.1099/ijs.0.01903-0
   PubMed Web of Science ®Google Scholar
• Nielsen HB, Mladenovska Z, Ahring BK. Bioaugmentation of a two-stage thermophilic (C) anaerobic digestion concept for improvement of the methane yield from cattle manure. Biotechnol Bioeng. 2007;97:1638–1643. doi: 10.1002/bit.21342
   PubMed Web of Science ®Google Scholar
• Costa JC, Barbosa SG, Alves MM, Sousa DZ. Thermochemical pre- and biological co-treatments to improve hydrolysis and methane production from poultry litter. Bioresour Technol. 2012;111:141–147. doi: 10.1016/j.biortech.2012.02.047
   PubMed Web of Science ®Google Scholar
• Cavaleiro AJ, Sousa DZ, Alves MM. Methane production from oleate: assessing the bioaugmentation potential of Syntrophomonas zehnderi. Water Res. 2010;44: 4940–4947. doi: 10.1016/j.watres.2010.07.039
   PubMed Web of Science ®Google Scholar
• Cirne DG, Björnsson L, Alves M, Mattiasson B. Effects of bioaugmentation by an anaerobic lipolytic bacterium on anaerobic digestion of lipid-rich waste. J Chem Technol Biotechnol. 2006;81:1745–1752. doi: 10.1002/jctb.1597
   Web of Science ®Google Scholar
• Tale VP, Maki JS, Struble CA, Zitomer DH. Metha- nogen community structure–activity relationship and bioaugmentation of overloaded anaerobic digesters. Water Res. 2011;45: 5249–5256. doi: 10.1016/j.watres.2011.07.035
   PubMed Web of Science ®Google Scholar
• Saravanane R, Murthy DVS, Krishnaiah K. Bioaugmentation and anaerobic treatment of pharmaceutical effluent in fluidized bed reactor. J Environ Sci Health A. 2001;36: 779–791. doi: 10.1081/ESE-100103760
   Web of Science ®Google Scholar
• Hashsham SA, Fernández AS, Dollhopf SL, Dazzo FB, Hickey RF, Tiedje JM, Criddle CS. Parallel processing of substrate correlates with greater functional stability in methanogenic bioreactor communities perturbed by glucose. Appl Environ Microbiol. 2000;66:4050–4057. doi: 10.1128/AEM.66.9.4050-4057.2000
   PubMed Web of Science ®Google Scholar
• Briones A, Raskin L. Diversity and dynamics of microbial communities in engineered environments and their implications for process stability. Curr Opin Biotechnol. 2003;14:270–276. doi: 10.1016/S0958-1669(03)00065-X
   PubMed Web of Science ®Google Scholar
• Palatsi J, Laureni M, Andres MV, Flotats X, Nielsen HB, Angelidaki I. Strategies for recovering inhibition caused by long chain fatty acids on anaerobic thermophilic biogas reactors. Bioresour Technol. 2009;100:4588–4596. doi: 10.1016/j.biortech.2009.04.046
   PubMed Web of Science ®Google Scholar
• Bjerketorp J, Ng Tze Chiang A, Hjort K, Rosenquist M, Liu W.-T, Jansson JK. Rapid lab-on-a-chip profiling of human gut bacteria. J Microbiol Methods. 2008;72: 82–90. doi: 10.1016/j.mimet.2007.10.011
   PubMed Web of Science ®Google Scholar
• Franke-Whittle IH, Goberna M, Pfister V, Insam H. Design and development of the ANAEROCHIP microarray for investigation of methanogenic communities. J Microbiol Methods. 2009;79:279–288. doi: 10.1016/j.mimet.2009.09.017
   PubMed Web of Science ®Google Scholar
• Sundh I, Carlsson H, Nordberg Ãk, Hansson M, Mathisen B. Effects of glucose overloading on microbial community structure and biogas production in a laboratory-scale anaerobic digester. Bioresour Technol. 2003;89:237–243. doi: 10.1016/S0960-8524(03)00075-0
   PubMed Web of Science ®Google Scholar
• Frostegård A, Tunlid A, Baath E. Use and misuse of PLFA measurements in soils. Soil Biol Biochem. 2011;43: 1621–1625. doi: 10.1016/j.soilbio.2010.11.021
   Web of Science ®Google Scholar
• Gattinger A, Günthner A, Schloter M, Munch JC. Characterisation of Archaea in soils by polar lipid analysis. Acta Biotechnol. 2003;23:21–28. doi: 10.1002/abio.200390003
   Google Scholar
• Radl V, Gattinger A, Chronáková A, Nemcová A, Cuhel J, Simek M, Munch JC, Schloter M, Elhottová D. Effects of cattle husbandry on abundance and activity of methanogenic archaea in upland soils. ISME J. 2007;1:443–452. doi: 10.1038/ismej.2007.60
   PubMed Web of Science ®Google Scholar
• Oravecz O, Elhottova D, Kristufek V, Sustr V, Frouz J, Triska J, Marialigeti K. Application of ARDRA and PLFA analysis in characterizing the bacterial communities of the food, gut and excrement of saprophagous larvae of Penthetria holosericea (Diptera: Bibionidae): a pilot study. Folia Microbiol. 2004;49:83–93.
   Google Scholar
• Schwarzenauer T, Illmer P. PLFA profiles for microbial community monitoring in anaerobic digestion. Folia Microbiol. 2012;57:331–333. doi: 10.1007/s12223-012-0136-3
   PubMed Web of Science ®Google Scholar
• Buyer JS, Sasser M. High throughput phospholipid fatty acid analysis of soils. Appl Soil Ecol. 2012;61:127–130. doi: 10.1016/j.apsoil.2012.06.005
   Web of Science ®Google Scholar
• McMahon KD, Martin HG, Hugenholtz P. Integrating ecology into biotechnology. Curr Opin Biotechnol. 2007;18:287–292. doi: 10.1016/j.copbio.2007.04.007
   PubMed Web of Science ®Google Scholar