Enrichment and activity of methanotrophic microorganisms from municipal wastewater sludge

References

• Knittel K, Boetius A. Anaerobic oxidation of methane: progress with an unknown process. Ann Rev Microbiol. 2009;63:311–334. doi: 10.1146/annurev.micro.61.080706.093130
   PubMed Web of Science ®Google Scholar
• Reeburgh WS. Oceanic methane biogeochemistry. Chem Rev. 2007;107:486–513. doi: 10.1021/cr050362v
   PubMed Web of Science ®Google Scholar
• Chernicharo CA. Princípios do tratamento biológico de águas residuárias: Reatores anaeróbios. 2 edição ed. Belo Horizonte: Departamento de Engenharia Sanitária e Ambiental – DESA/UFMG, Editora UFMG; 2007.
   Google Scholar
• Luesken FA. Applied aspects of nitrite-dependent methane oxidation. Nijmegen: Radboud University Nijmegen; 2011.
   Google Scholar
• Cakir FY, Stenstrom MK. Greenhouse gas production: a comparison between aerobic and anaerobic wastewater treatment technology. Water Resour. 2005;39:4197–4203.
   Google Scholar
• Bogner J, PIipatti R, Hashimoto S, Diaz C, Mareckova K, Diaz L, Kjeldsen P, Monni S, Faaij A, Gao Q, Zhang T, Ahmed MA, Sutamihardja RT, Gregory R. Mitigation of global greenhouse gas emissions from waste: conclusions and strategies from the Intergovernmental Panel on Climate Change (IPCC) Fourth Assessment Report. Working Group III (Mitigation). Waste Manag Res. 2008;26:11–32. doi: 10.1177/0734242X07088433
   PubMed Web of Science ®Google Scholar
• Souza CL, Chernicharo CAL. Methane losses in UASB reactors treating domestic wastewater: mass balance and possible improvements. Proc 10th IWA specialist conference on small water and wastewater treatment systems; 2011.
   Google Scholar
• Souza CL, Chernicharo CA, Aquino SF. Quantification of dissolved methane in UASB reactors treating domestic wastewater under different operating conditions. Water Sci Technol. 2011;64:2259–2264. doi: 10.2166/wst.2011.695
   PubMed Web of Science ®Google Scholar
• Greenfield PF, Batstone DJ. Anaerobic digestion: impact of future GHG mitigation policies on methane generation and usage. Montreal: Publisher; 2004.
   Google Scholar
• Hanson RS, Hanson TE. Methanotrophic bacteria. Microbiol Mol Biol Rev. 1996;60:439–471.
   Google Scholar
• Ettwig KF, Shima S, van de Pas-Schoonen KT, Kahnt J, Medema MH, Op den Camp HJ, Jetten MS, Strous M. Denitrifying bacteria anaerobically oxidize methane in the absence of Archaea. Environ Microbiol. 2008;10:3164–3173. doi: 10.1111/j.1462-2920.2008.01724.x
   PubMed Web of Science ®Google Scholar
• Hu S, Zeng RJ, Burow LC, Lant P, Keller J, Yuan Z. Enrichment of denitrifying anaerobic methane oxidizing microorganisms. Environ Microbiol Rep. 2009;1:377–384. doi: 10.1111/j.1758-2229.2009.00083.x
   PubMed Web of Science ®Google Scholar
• Luesken FA, Zhu B, Alen T, Butler MK, Diaz MR, Song B, Op den Camp HJ, Jetten MS, Ettwig KF. pmoA primers for detection of anaerobic methanotrophs. Appl Environ Microbiol. 2011;77:3877–3880. doi: 10.1128/AEM.02960-10
   PubMed Web of Science ®Google Scholar
• Liebner S, Wagner D. Abundance, distribution and potential activity of Methane oxidising bacteria in permafrost soils from the Lena Delta, Siberia. Environ Microbiol. 2007;9:107–117. doi: 10.1111/j.1462-2920.2006.01120.x
   PubMed Web of Science ®Google Scholar
• Whittenbury R, Krieg NR. Methylococcacea fam. nov. In: Krieg NR, Holt JG, editor. Bergey's manual of systematic bacteriology. Vol. I, Baltimore: Williams and Wilkins; 1984. p. 256–262.
   Google Scholar
• Bowman JP, Sly LI, Stackebrandt E. The phylogenetic position of the family Methylococcaceae. Inter J Systemat Evol Microbiol. 1995;45:182–185.
   Google Scholar
• Lee JH, Kim TG, Cho KS. Isolation and characterization of a facultative methanotroph degrading malodor-causing volatile sulfur compounds. J Hazard Mater. 2012;15:224–229. doi: 10.1016/j.jhazmat.2012.07.047
   Web of Science ®Google Scholar
• Dunfield PF, Yuryev A, Senin P, Smirnova AV, Stott MB, Hou S, Ly B, Saw JH, Zhou Z, Ren Y, Wang J, Mountain BW, Crowe MA, Weatherby TM, Bodelier PL, Liesack W, Feng L, Wang L, Alam M. Methane oxidation by an extremely acidophilic bacterium of the phylum Verrucomicrobia. Nature. 2007;450:879–882. doi: 10.1038/nature06411
   PubMed Web of Science ®Google Scholar
• Boetius A, Ravenschlag K, Schubert CJ, Rickert D, Widdel F, Gieseke A, Amann R, Jorgensen BB, Witte U, Pfannkuche O. A marine microbial consortium apparently mediating anaerobic oxidation of methane. Nature. 2000;407:623–626. doi: 10.1038/35036572
   PubMed Web of Science ®Google Scholar
• Orphan VJ, House CH, Hinrichs KU, Mckeengans KD, Delong EF. Multiple archaeal groups mediate methane oxidation in anoxic cold seep sediments. Microbiology. 2002;99:7663–7668.
   Google Scholar
• Knittel K, Boetius A. Anaerobic oxidation of Methane: progress with an unknown process. Ann Rev Microbiol. 2009;63:311–334. doi: 10.1146/annurev.micro.61.080706.093130
   PubMed Web of Science ®Google Scholar
• Ettwig KF, van Alen T, van de Pas-Schoonen KT, Jetten MS, Strous M. Enrichment and molecular detection of denitrifying methanotrophic bacteria of the NC10 phylum. Appl Environ Microbiol. 2009;75:3656–3662. doi: 10.1128/AEM.00067-09
   PubMed Web of Science ®Google Scholar
• Ettwig KF. Nitrite-dependent methane oxidation. Nijmegen: Radboud University Nijmegen; 2010.
   Google Scholar
• Valentine DL. Biogeochemistry and microbial ecology of methane oxidation in anoxic environments: a review. Antonie van Leeuwenhoek. 2002;81:271–282. doi: 10.1023/A:1020587206351
   PubMed Web of Science ®Google Scholar
• Hinrichs KU, Hayes JM, Sylva SP, Brewer PG, DeLong EF. Methane-consuming archaebacteria in marine sediments. Nature. 1999;398:802–805. doi: 10.1038/19751
   PubMed Web of Science ®Google Scholar
• Nauhaus K, Treude T, Boetius A, Kruger M. Environmental regulation of the anaerobic oxidation of methane: a comparison of ANME-I and ANME-II communities. Environ Microbiol. 2005;7:98–106. doi: 10.1111/j.1462-2920.2004.00669.x
   PubMed Web of Science ®Google Scholar
• Meulepas RJW, Jagersma CG, Zhang Y, Petrillo M, Cai HZ, Buisman CJN, Stams AJM, Lens PNL. Trace methane oxidation and the methane dependency of sulfate reduction in anaerobic granular sludge. FEMS Microbiol Ecol. 2010;72:261–271. doi: 10.1111/j.1574-6941.2010.00849.x
   PubMed Web of Science ®Google Scholar
• Barnes RO, Goldberg ED. Methane production and consumption in anoxic marine sediments. Geology. 1976;4:297–300. doi: 10.1130/0091-7613(1976)4<297:MPACIA>2.0.CO;2
   Web of Science ®Google Scholar
• Smemo KA, Yavitt JB. Anaerobic oxidation of methane: an underappreciated aspect of methane cycling in peatland ecosystems? Biogeosciences. 2011;8:779–793. doi: 10.5194/bg-8-779-2011
   Web of Science ®Google Scholar
• Raghoebarsing AA, Pol A, Pas-Schoonen KTvd, Smolders AJP, Ettwig KF, Rijpstra WIC, Schouten S, Damst JSS, Camp HJMOd, Jetten MSM, Strous M. A microbial consortium couples anaerobic methane oxidation to denitrification. Nature. 2006;440:918–921. doi: 10.1038/nature04617
   PubMed Web of Science ®Google Scholar
• Strous M, Heijnen JJ, Kuenen JG, Jetten MSM. The sequencing batch reactor as a poweful tool for the study of slowly growing anaerobic ammonium-oxidizing microorganisms. Appl Environ Microbiol. 1998;50:589–596.
   Web of Science ®Google Scholar
• GARCIA PPG. Caracterização dos microrganismos oxidadores de sulfeto e metano em reator UASB. Belo Horizonte: UFMG; 2009.
   Google Scholar
• Thomsen TR, Finster K, Ramsing NB. Biogeochemical and molecular signatures of anaerobic methane oxidation in a marine sediment. Appl Environ Microbiol. 2001;67:1646–1656. doi: 10.1128/AEM.67.4.1646-1656.2001
   PubMed Web of Science ®Google Scholar
• Luesken FA, van Alen TA, van der Biezen E, Frijters C, Toonen G, Kampman C, Hendrickx TL, Zeeman G, Temmink H, Strous M, Op den Camp HJ, Jetten MS. Diversity and enrichment of nitrite-dependent anaerobic methane oxidizing bacteria from wastewater sludge. Appl Microbiol Biotechnol. 2011;92:845–854. doi: 10.1007/s00253-011-3361-9
   PubMed Web of Science ®Google Scholar
• APHA. Standard methods for the examination of water and wastewater. 21st ed. Washington, DC: American Public Health Association; 2005.
   Google Scholar
• Egli K, Langer C, Siegrist H-R, Zehnder AJB, Wagner M, van der Meer JR. Community analysis of ammonia and nitrite oxidizers during start-up of nitritation reactors. Appl Environ Microbiol. 2003;69:3213–3222. doi: 10.1128/AEM.69.6.3213-3222.2003
   PubMed Web of Science ®Google Scholar
• Holmes AJ, Costello A, Lindstrom ME, Murrell JC. Evidence that particulate methane monooxygenase and ammonia monooxygenase may be evolutionary related. FEMS Microbiol Lett. 1995;132:203–208. doi: 10.1111/j.1574-6968.1995.tb07834.x
   PubMed Web of Science ®Google Scholar
• Caporaso G, Kuczynski J, Stombaugh J, Bittinger K, Bushman F, Costello E, Fierer N, Pena A, Goodrich J, Gordon J, Huttley YG, Kelley S, Knights D, Koenig J, Ley R, Lozupone C, Mc Donald D, Muegge B, Pirrung M, Reeder J, Sevinsky J, Turnbaugh P, Walters W, Widmann J, Yatsunenko T, Zaneveld J, Knight R. QIIME allows analysis of high-throughput community sequencing data. Nat Methods. 2010;7:335–336. doi: 10.1038/nmeth.f.303
   PubMed Web of Science ®Google Scholar
• Edgar RC. Search and clustering orders of magnitude faster than BLAST. Bioinformatics. 2010;26:2460–2461. doi: 10.1093/bioinformatics/btq461
   PubMed Web of Science ®Google Scholar
• Tamura K, Dudley J, Nei M, Kumar S. MEGA 4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol. 2007;24:1596–1599. doi: 10.1093/molbev/msm092
   PubMed Web of Science ®Google Scholar
• Mcdonald IR, Upton M, Hall G, Pickup RW, Edwards C, Saunders JR, Ritchie DA, Murrel JC. Molecular ecological analysis of methanogens and methanotrophs in blanket bog peat. Microb Ecol. 1999;38:225–233. doi: 10.1007/s002489900172
   PubMed Web of Science ®Google Scholar
• Wang X, Hu M, Xia Y, Wen X, Ding K. Pyrosequencing analysis of bacterial diversity in 14 wastewater treatment systems in China. Appl Environ Microbiol. 2012;78:7042–7047. doi: 10.1128/AEM.01617-12
   PubMed Web of Science ®Google Scholar
• Ganesan A, Chaussonnerie S, Tarrade A, Dauga C, Bouchez T, Pelletier E, Le Paslier D, Sghir A. Cloacibacillus evryensis gen. nov., sp. nov., a novel asaccharolytic, mesophilic, amino-acid-degrading bacterium within the phylum ‘Synergistetes’, isolated from an anaerobic sludge digester. Inter J Syst Evol Microbiol. 2008;58:2003–2012. doi: 10.1099/ijs.0.65645-0
   PubMed Web of Science ®Google Scholar
• Mac Conell ÉFA. Caracterização da comunidade bacteriana de filtros biológicos percoladores tratando efluente anaeróbio. Belo Horizonte: Universidade Federal de Minas Gerais; 2014.
   Google Scholar
• Costa MC, Carvalho L, Leal CD, Dias MF, Martins KL, Garcia GB, Mancuelo ID, Hipólito T, Mac Conell EFA, Okada D, Etchebehere C, Chernicharo CA, Araújo JC. Impact of inocula and operating conditions on the microbial community structure of two anammox reactors. Environ Technol. 2014;35:1–12. doi: 10.1080/09593330.2014.883432
   PubMed Web of Science ®Google Scholar
• Silva MRL. Caracterização da comunidade microbiana de biofilme anaeróbio em presença de bifenilas policloradas. São Carlos: Universidade de São Paulo; 2012.
   Google Scholar
• Cardinali-Rezende J, Araújo JC, Almeida PGS, Chernicharo CAL, Sanz JL, Chartone-Souza E, Nascimento AMA. Organic loading rate and food-to-microorganism ratio shape prokaryotic diversity in a demo-scale up-flow anaerobic sludge blanket reactor treating domestic wastewater. Antonie van Leeuwenhoek. 2013;104:993–1003. doi: 10.1007/s10482-013-0018-y
   PubMed Web of Science ®Google Scholar
• Leclerc M, Céline D, René M, Jean-Jacques G. Single strand conformation polymorphism monitoring of 16S rDNA Archaea during start-up of an anaerobic digester. FEMS Microbiol Ecol. 2001;34:213–220. doi: 10.1111/j.1574-6941.2001.tb00772.x
   PubMed Web of Science ®Google Scholar
• Raskin L, Stromley JM, Rittmann BE, Stahl DA. Group-specific 16S rRNA hybridization probes to describe natural communities of methanogens. Appl Environ Microbiol. 1994;60:1232–1240.
   PubMed Web of Science ®Google Scholar
• Vos PD, Garrity GM, Jones D, Krieg NR, Ludwig W, Rainey FA, Schleifer KH, Whitman WB. Bergey's manual of systematic bacteriology. Vol. Three. The Firmicutes. 2nd ed. New York, NY: Springer; 2009.
   Google Scholar
• Donachie SP, Hou S, Lee KS. The Hawaiian archipelago: a microbial diversity hotspot. Microb Ecol. 2004;48:509–520. doi: 10.1007/s00248-004-0217-1
   PubMed Web of Science ®Google Scholar
• Pereira AD, Leal CD, Dias MF, Etchebehere C, Chernicharo CAL, Araújo JC. Effect of phenol on the nitrogen removal performance and microbial community structure and composition of an anammox reactor. Bioresour Technol. 2014;166:103–111. doi: 10.1016/j.biortech.2014.05.043
   PubMed Web of Science ®Google Scholar
• Tessaro S. Estudo da comunidade de bactérias metanotróficas em uma cronossequência de solos da Amazônia. São Paulo: Universidade de São Paulo; 2012.
   Google Scholar
• Greene EA, Brunelle V, Jenneman GE, Voordouw G. Synergistic inhibition of microbial sulfide production by combinations of the metabolic inhibitor nitrite and biocides. Appl Environ Microbiol. 2006;72:7897–7901. doi: 10.1128/AEM.01526-06
   PubMed Web of Science ®Google Scholar
• Jiang G, Gutierrez O, Sharma KR, Yuan Z. Effects of nitrite concentration and exposure time on sulfide and methane production in sewer systems. Water Res. 2010;44:4241–4251. doi: 10.1016/j.watres.2010.05.030
   PubMed Web of Science ®Google Scholar
• Mohanakrishnan J, Gutierrez O, Sharma KR, Guisasola A, Werner U, Meyer RL, Keller J, Yuan Z. Impact ofnitrate addition on biofilm properties and activities in risingmain sewers. Water Res. 2009;43:4225–4237. doi: 10.1016/j.watres.2009.06.021
   PubMed Web of Science ®Google Scholar
• Krieg NR, Staley JT, Brown DR, Hedlund BP, Paster BJ, Ward NL, Ludwig W, Whitman WB. Bergey's manual of systematic bacteriology. Vol. Four. The Bacteroidetes, Spirochaetes, Tenericutes (Mollicutes), Acidobacteria, Fibrobacteres, Fusobacteria, Dictyoglomi, Gemmatimonadetes, Lentisphaerae, Verrucomicrobia, Chlamydiae and Planctomycetes. 2nd ed. New York, NY: Springer; 2010.
   Google Scholar
• Cruz-Martinez K, Suttle KB, Brodie EL, Power ME, Andersen GL, Banfield JF. Despite strong seasonal responses, soil microbial consortia are more resilient to long-term changes in rainfall than overlying grassland. ISME J. 2009;3:738–744. doi: 10.1038/ismej.2009.16
   PubMed Web of Science ®Google Scholar
• Niemann H, Losekann T, de Beer D, Elvert M, Nadalig T, Knittel K, Amann R, Sauter EJ, Schluter M, Klages M, Foucher JP, Boetius A. Novel microbial communities of the Haakon Mosby mud volcano and their role as a methane sink. Nature. 2006;443:854–858. doi: 10.1038/nature05227
   PubMed Web of Science ®Google Scholar
• Ferrer M, Guazzaroni M-E, Richter M, García-Salamanca A, Yarza P, Suárez-Suárez A, Solano J, Alcaide M, Dillewijn Pv, Molina-Henares MA, López-Cortés N, Al-Ramahi Y, Guerrero C, Acosta A, Eugenio LId, Martínez V, Marques S, Rojo F, Santero E, Genilloud O, Pérez-Pérez J, Rosselló-Móra R, Ramos JL. Taxonomic and functional metagenomic profiling of the microbial community in the anoxic sediment of a sub-saline shallow lake (Laguna de Carrizo, Central Spain). Microbial Ecol. 2011;62:824–837. doi: 10.1007/s00248-011-9903-y
   PubMed Web of Science ®Google Scholar
• Schubert CJ, Coolen MJL, Neretin JN, Schippers A, Abbas B, Durisch-Kaiser E, Wehrli B, Hopmans EC, Damsté JSS, Wakeham J, Kuypers MMM. Aerobic and anaerobic methanotrophs in the Black Sea water column. Environ Microbiol. 2006;8:1844–1856. doi: 10.1111/j.1462-2920.2006.01079.x
   PubMed Web of Science ®Google Scholar
• Cvejic JH, Bodrossy L, Kovács KL, Rohmer M. Bacterial triterpenoids of the hopane series from the methanotrophic bacteria Methylocaldum spp.: phylogenetic implications and first evidence for an unsaturated aminobacteriohopanepolyol. FEMS Microbiol Lett. 2000;182:361–365. doi: 10.1111/j.1574-6968.2000.tb08922.x
   PubMed Web of Science ®Google Scholar
• Lieberman RL, Rosenzweig AC. Biological methane oxidation: regulation, biochemistry, and active site structure of particulate methane monooxygenase. Crit Rev Biochem Mol Biol. 2004;39:147–164. doi: 10.1080/10409230490475507
   PubMed Web of Science ®Google Scholar
• Brenner DJ, Krieg NR, Stakey JT. Bergey's manual of systematic bacteriology. Vol. Two. The Proteobacteria – Part B: Gammaproteobacteria. New York, NY: Springer; 2005.
   Google Scholar
• Gerardi MH. Wastewater bacteria. Hoboken, NJ: John Wiley & Sons, Inc; 2006.
   Google Scholar