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Article

Molecular characterization and antimicrobial resistance profiles of Mycobacterium tuberculosis complex in environmental substrates from three dairy farms in Eastern Cape, South Africa

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Pages 215-224 | Received 16 Feb 2019, Accepted 07 Jul 2019, Published online: 15 Jul 2019

References

  • Abayomi A, Cowan M. 2014. The HIV/AIDS epidemic in South Africa: convergence with tuberculosis, socioecological vulnerability, and climate change patterns. SAMJ. 104(8):583–584.
  • Adams A, Bolin S, Fine A, Bolin C, Kaneene J. 2013. Comparison of PCR versus culture for detection of Mycobacterium bovis after experimental inoculation of various matrices held under environmental conditions for extended periods. Appl Environ Microbiol. 79(20):6501–6506. doi:10.1128/AEM.02032-13.
  • Addo KK, Addo SO, Mensah GI, Mosi L,Bonsu FA. 2017. Genotyping and drug susceptibility testing of mycobacterial isolates from population-based tuberculosis prevalence survey in Ghana. Bmc Infect Dis. 17(1):743. doi:10.1186/s12879-017-2853-3.
  • AIDS2014_Globa_Factsheet. 2014. Global fact sheet: HIV/AIDS. 20th International AIDS Conference, Melbourne (Australia); 2014 Jul 20–25; [accessed 2018 Aug 20]. https://www.aids2014.org/webcontent/file/AIDS2014_Global_Factsheet_April_2014.pdf.
  • Ayele WY, Neill SD, Zinsstag J, Weiss MG, Pavlik I. 2004. Bovine tuberculosis: an old disease but a new threat to Africa. Int J Tuberc Lung Dis. 8(8):924–937.
  • Bapat PR, Dodkey RS, Shekhawat SD, Husain AA, Nayak AR, Kawle AP, Daginawala HF, Singh LK, Kashyap RS. 2017. Prevalence of zoonotic tuberculosis and associated risk factors in Central Indian populations. J Epidemiol Glob Health. 7(4):277–283. doi:10.1016/j.jegh.2017.08.007.
  • Barasona JA, Vicente J, Díez-Delgado I, Aznar J, Gortázar C, Torres MJ. 2017. Environmental presence of mycobacterium tuberculosis complex in aggregation points at the wildlife/livestock interface. Transbound Emerg Dis. 64(4):1148–1158. doi:10.1111/tbed.12382.
  • Barbier E, Boschiroli ML, Gueneau E, Rochelet M, Payne A, de Cruz K, Blieux AL, Fossot C,Hartmann A. 2016. First molecular detection of Mycobacterium bovis in environmental samples from a french region with endemic bovine tuberculosis. J Appl. Microbiol. 120(5):1193–1207.
  • Berhan A, Berhan Y, Yizengaw D. 2013. A meta-analysis of drug resistant tuberculosis in sub-Saharan Africa: how strongly associated with previous treatment and HIV co-infection?. Ethiop J Health Sci. 23(3):271–282.
  • Berrada ZL, Lin SG, Rodwell TC, Nguyen D, Schecter GF, Pham L, Janda JM, Elmaraachli W, Catanzaro A, Desmond E. 2016. Rifabutin and rifampin resistance levels and associated rpoB mutations in clinical isolates of Mycobacterium tuberculosis complex. Diagn Microbiol Infect Dis. 85(2):177–181. doi:10.1016/j.diagmicrobio.2016.01.019.
  • Bolaños CA, Paula CL, Guerra ST, Franco MM, Ribeiro MG. 2017. Diagnosis of mycobacteria in bovine milk: an overview. Rev Inst Med Trop São Paulo. 59:e40. doi:10.1590/s1678-9946201759040.
  • Brites D, Loiseau C, Menardo F, Borrell S, Boniotti MB, Warren R, Dippenaar A, Parsons SDC, Beisel C, Behr MA, et al. 2018. A new phylogenetic framework for the animal-adapted Mycobacterium tuberculosis complex. Front Microbiol. 9:2820. doi:10.3389/fmicb.2018.02820
  • CDC. 2012. Mycobacterium bovis (Bovine Tuberculosis) in human. Centers for Disease Control and Prevention factsheets. [Internet]. [accessed 2018 Aug 19]. https://www.cdc.gov/tb/publications/factsheets/general/mbovis.pdf.
  • Cox HS, McDermid C, Azevedo V, Muller O, Coetzee D, Simpson J, Barnard M, Coetzee G, van Cutsem G, Goemaere E. 2011. Epidemic levels of drug resistant tuberculosis (MDR and XDR-TB) in a high HIV prevalence setting in Khayelitsha, South Africa. PLoS One. 5:e13901. doi:10.1371/journal.pone.0013901
  • de Kantor IN, LoBue PA, Thoen CO. 2010. Human tuberculosis caused by Mycobacterium bovis in the United States, Latin America and the Caribbean [Serialised article. Tuberculosis: a re-emerging disease in animals and humans. Number 3 in the series]. Int J Tuberc Lung Dis. 14(11):1369–1373.
  • Desikan P, Kharate A, Panwalkar N, Khurana J, Mirza S, Chaturvedi A, Varathe R, Chourey M, Kumar P, Doshi N, et al. 2016. Frequency of mutations in rifampicin and isoniazid resistant isolates of M. tuberculosis: an analysis from Central India. Germs. 6(4):125–131. doi:10.11599/germs.2016.1096.
  • Feliciano C, Nascimento M, Anselmo L, Pocente R, Bellissimo-Rodrigues F, Bollela V. 2015. Role of a GenoType MTBDRplus line probe assay in early detection of multidrug-resistant tuberculosis at a Brazilian reference center. Braz J Med Biol Res. 48:759–764. doi:10.1590/1414-431x20154458.
  • Fine A, O’Brien D, Winterstein S, Kaneene J. 2011. An effort to isolate mycobacterium bovis from environmental substrates during investigations of bovine tuberculosis transmission sites (Cattle Farms and Wildlife Areas) in Michigan USA. ISRN Vet Sci. 2011(2011):787181.
  • Fitzgerald SD, Kaneene JB. 2013. Wildlife reservoirs of bovine tuberculosis worldwide: hosts, pathology, surveillance, and control. Vet Pathol. 50(3):488–499.
  • Ghodbane R, Mba Medie F, Lepidi H, Nappez C, Drancourt M. 2014. Long-term survival of tuberculosis complex mycobacteria in soil. Microbiology. 160:496–501. doi:10.1099/mic.0.082503-0.
  • Katale BZ, Mbugi EV, Kendal S, Fyumagwa RD, Kibiki GS, Godfrey-Faussett P, Keyyu JD, van Helden P, Matee MI. 2012. Bovine tuberculosis at the human-livestock-wildlife interface: is it a public health problem in Tanzania? A review. Onderstepoort J Vet. 79(2):84–97. doi:10.4102/ojvr.v79i2.463.
  • Kazwala RR, Kambarage DM, Daborn CJ, Nyange J, Jiwa SFH, Sharp JM. 2001. Risk factors associated with the occurrence of bovine tuberculosis in cattle in the Southern Highlands of Tanzania. Vet Res Commun. 25(8):609–614. doi:10.1023/A:1012757011524.
  • Liébana E, Aranaz A, Mateos A, Vilafranca M, Gomez-Mampaso E, Tercero JC, Alemany J, Suarez G, Domingo M, Dominguez L. 1995. Simple and rapid detection of Mycobacterium tuberculosis complex organisms in bovine tissue samples by PCR. J Clin Microbiol. 33(1):33–36.
  • Lienhardt C, Nahid P, Rich ML, Bansbach C, Kendall EA, Churchyard G, González-Angulo L, D’Ambrosio L, Migliori GB, Raviglione M. 2017. Target regimen profiles for treatment of tuberculosis: a WHO document. Eur Respir J. 49(1):1602352. doi:10.1183/13993003.02352-2016.
  • Manjelievskaia J, Erck D, Piracha S, Schrager L. 2016. Drug-resistant TB: deadly, costly and in need of a vaccine. Trans R Soc Trop Med Hyg. 110(3):186–191. doi:10.1093/trstmh/trw006.
  • Meiring C, van Helden PD, Goosen WJ. 2018. TB control in humans and animals in South Africa: a perspective on problems and successes. Front Vet Sci. 5:298. doi:10.3389/fvets.2018.00040.
  • Müller B, Dürr S, Alonso S, Hattendorf J, Laisse CJM, Parsons SDC, van Helden PD, Zinsstag J. 2013. Zoonotic Mycobacterium bovis–induced tuberculosis in humans. Emerg Infect Dis. 19(6):899–908. doi:10.3201/eid1909.130682.
  • Oloya J, Muma JB, Opuda-Asibo J, Djonne B, Kazwala R, Skjerve E. 2007. Risk factors for herd-level bovine tuberculosis seropositivity in transhumant cattle in Uganda. Prev Vet Med. 80(4):318–329. doi:10.1016/j.prevetmed.2007.03.004.
  • Plikaytis BB, Crawford JT, Woodley CL, Butler WR, Eisenach KD, Cave MD, Shinnick TM. 1993. Rapid, amplification-based fingerprinting of Mycobacterium tuberculosis. J Gen Microbiol. 139:1537–1542. doi:10.1099/00221287-139-7-1537.
  • Riojas MA, McGough KJ, Rider-Riojas CJ, Rastogi N,Hazbón MH. 2018. Phylogenomic analysis of the species of the Mycobacterium tuberculosis complex demonstrates that Mycobacterium africanum. Mycobacterium bovis, Mycobacterium caprae, Mycobacterium microti and Mycobacterium pinnipedii are later heterotypic synonyms of Mycobacterium tuberculosis. IJSEM . 68(1):324–332.
  • Rufai SB, Kumar P, Singh A, Prajapati S, Balooni V, Singh S. 2014. Comparison of XPERT MTB/RIF with line probe assay for detection of rifampin-monoresistant Mycobacterium tuberculosis. J Clin Microbiol. 52(6):1846–1852. doi:10.1128/JCM.00749-14.
  • SANAC. 2018. Let our actions count: South Africa’s National Strategic Plan for HIV, TB and STIs 2017-2022. [Internet]. [accessed 2018 Sept 11]. http://sanac.org.za/wp-content/uploads/2017/05/NSP_FullDocument_FINAL.pdf.
  • Schmidt CW. 2008. Linking TB and the environment: an overlooked mitigation strategy. Environ Health Persp. 116(11):A478–A485. doi:10.1289/ehp.116-a478.
  • Sharma A, Bloss E, Heilig CM, Click ES. 2016. Tuberculosis caused by Mycobacterium africanum, United States, 2004-2013. Emerg Infect Dis. 22(3):396–403. doi:10.3201/eid2203.151505.
  • Silaigwana B, Green E, Ndip RN. 2012. Molecular detection and drug resistance of Mycobacterium tuberculosis complex from cattle at a dairy farm in the Nkonkobe Region of South Africa: a pilot study. Int J Environ Res Public Health. 9(6):2045–2056. doi:10.3390/ijerph9020343.
  • Tolani M, D’souza D, Mistry N. 2012. Drug resistance mutations and heteroresistance detected using the GenoType MTBDRplusassay and their implication for treatment outcomes in patients from Mumbai, India. BMC Infect Dis. 12:9. doi:10.1186/1471-2334-12-166.
  • Tschopp R, Schelling E, Hattendorf J, Aseffa A, Zinsstag J. 2009. Risk factors of bovine tuberculosis in cattle in rural livestock production systems in Ethiopia. Prev Vet Med. 89(3–4):205–211. doi:10.1016/j.prevetmed.2009.02.006.
  • Tseng ST, Tai CH, Li CR, Lin CF, Shi ZY. 2015. The mutations of katG and inhA genes of isoniazid-resistant Mycobacterium tuberculosis isolates in Taiwan. J Microbiol Immunol Infect. 48(3):249–255. doi:10.1016/j.jmii.2013.08.018.
  • WHO. 2018. Tuberculosis. [Internet]. [accessed 2018 Aug 16]. http://www.who.int/news-room/fact-sheets/detail/tuberculosis.
  • Yakrus MA, Driscoll J, McAlister A, Sikes D, Hartline D, Metchock B, Starks A. 2016. Molecular and growth-based drug susceptibility testing of Mycobacterium tuberculosis complex for ethambutol resistance in the United States. Tubercu Res Treat. 2016 Article ID 3404860:5. doi:10.1155/2016/3404860.

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