The composition of faecal microbiota is related to the amount and variety of dietary fibres

References

• Arora T, Bäckhed F. 2016. The gut microbiota and metabolic disease: current understanding and future perspectives. J Intern Med. 280:339–349.
   PubMed Web of Science ®Google Scholar
• Arumugam M, Raes J, Pelletier E, Le Paslier D, Yamada T, Mende DR, Fernandes GR, Tap J, Bruls T, Batto J-M, et al. 2011. Enterotypes of the human gut microbiome. Nature. 473(7346):174–180.
   PubMed Web of Science ®Google Scholar
• Belenguer A, Duncan SH, Holtrop G, Anderson SE, Lobley GE, Flint HJ. 2007. Impact of pH on lactate formation and utilization by human fecal microbial communities. Appl Environ Microbiol. 73(20):6526–6533.
   PubMed Web of Science ®Google Scholar
• Bengtsson S, Aman P. 1990. Isolation and chemical characterization of water-soluble arabinoxylans in rye grain. Carbohydr Polym. 12(3):267–277.
   Web of Science ®Google Scholar
• Berding K, Holscher HD, Arthur AE, Donovan SM. 2018. Fecal microbiome composition and stability in 4- to 8-year old children is associated with dietary patterns and nutrient intake. J Nutr Biochem. 56:165–174.
   PubMed Web of Science ®Google Scholar
• Burkitt D, Walker A, Painter N. 1972. Effect of dietary fibre on stools and transit-times, and its role in the causation of disease. Lancet. 30:1408–1411.
   Google Scholar
• Cummings JH. 1984. Constipation, dietary fibre and the control of large bowel function. Postgrad Med J. 60:811–819.
   PubMed Web of Science ®Google Scholar
• Cummings JH, Antoine J-M, Azpiroz F, Bourdet-Sicard R, Brandtzaeg P, Calder PC, Gibson GR, Guarner F, Isolauri E, Pannemans D, et al. 2004. PASSCLAIM 1 – gut health and immunity. Eur J Nutr. 43(S2):ii118–ii173.
   PubMedGoogle Scholar
• Dahl WJ, Stewart ML. 2015. Dietetics: health implications of dietary fiber. J Acad Nutr Diet. 115(11):1861–1869.
   PubMed Web of Science ®Google Scholar
• David LA, Materna AC, Friedman J, Campos-Baptista MI, Blackburn MC, Perrotta A, Erdman SE, Alm EJ. 2014. Host lifestyle affects human microbiota on daily timescales. Genome Biol. 15(7):R89.
   PubMed Web of Science ®Google Scholar
• De Filippis F, Pellegrini N, Laghi L, Gobbetti M, Ercolini D. 2016. Unusual sub-genus associations of faecal Prevotella and Bacteroides with specific dietary patterns. Microbiome. 4(1):1–6.
   PubMedGoogle Scholar
• Dodevska MS, Djordjevic BI, Sobajic SS, Miletic ID, Djordjevic PB, Dimitrijevic-Sreckovic VS. 2013. Characterisation of dietary fibre components in cereals and legumes used in Serbian diet. Food Chem. 141(3):1624–1629.
   PubMed Web of Science ®Google Scholar
• Dodevska MS, Sobajic SS, Djordjevic BI. 2015. Fibre and polyphenols of selected fruits, nuts and green leafy vegetables used in Serbian diet. J Serb Chem Soc. 80(1):21–33.
   Web of Science ®Google Scholar
• Dominianni C, Sinha R, Goedert JJ, Pei Z, Yang L, Hayes RB, Ahn J. 2015. Sex, body mass index, and dietary fiber intake influence the human gut microbiome. PLoS One 10(4):e0124599.
   PubMed Web of Science ®Google Scholar
• Falony G, Joossens M, Vieira-Silva S, Wang J, Darzi Y, Faust K, Kurilshikov A, Bonder MJ, Valles-Colomer M, Vandeputte D, et al. 2016. Population-level analysis of gut microbiome variation. Science. 352(6285):560–564.
   PubMed Web of Science ®Google Scholar
• Falony G, Verschaeren A, De Bruycker F, De Preter V, Verbeke K, Leroy F, De Vuyst L. 2006. Cross-feeding between Bifidobacterium longum BB536 and acetate-converting, butyrate-producing colon bacteria during growth on oligofructose. Appl Environ Microbiol. 75(18):5884–5892.
   Google Scholar
• Fehlbaum S, Prudence K, Kieboom J. 2018. In vitro fermentation of selected prebiotics and their effects on the composition and activity of the adult gut microbiota. Int J Mol Sci. 19:pii: E3097.
   Web of Science ®Google Scholar
• Herranz J, Vidal-Valverde C, Rojas-Hidalgo E. 1981. Cellulose, hemicellulose and lignin content of raw and cooked Spanish vegetables. J Food Sci. 46(6):1927–1933.
   Web of Science ®Google Scholar
• Hjorth MF, Ritz C, Blaak EE, Saris WHM, Langin D, Kellebjerg Poulsen S, Larsen TM, Sørensen TIA, Zohar Y, Astrup A. 2017. Pretreatment fasting plasma glucose and insulin modify dietary weight loss success: results from 3 randomized clinical trials. Am J Clin Nutr. 106(2):499–505.
   PubMed Web of Science ®Google Scholar
• Hjorth MF, Roager HM, Larsen TM, Poulsen SK, Licht TR, Bahl MI, Zohar Y, Astrup A. 2018. Pre-treatment microbial Prevotella-to-Bacteroides ratio, determines body fat loss success during a 6-month randomized controlled diet intervention. Int J Obes. 42(3):580–583.
   Web of Science ®Google Scholar
• Holtekjølen AK. 2006. Contents of starch and non-starch polysaccharides in barley varieties of different origin. Food Chem. 94:345–358.
   Web of Science ®Google Scholar
• Hooper LV, Littman DR, Macpherson AJ. 2012. Interactions between the microbiota and the immune system. Science. 336(6086):1268–1273.
   PubMed Web of Science ®Google Scholar
• Kalala G, Kambashi B, Everaert N, Beckers Y, Richel A, Pachikian B, Neyrinck AM, Delzenne NM, Bindelle J. 2017. Characterization of fructans and dietary fibre profiles in raw and steamed vegetables. Int J Food Sci Nutr. 69(6):682–689.
   PubMed Web of Science ®Google Scholar
• Karppinen S, Liukkonen K, Aura A-M, Forssell P, Poutanen K. 2000. In vitro fermentation of polysaccharides of rye, wheat and oat brans and inulin by human faecal bacteria. J Sci Food Agric. 80(10):1469–1476.
   Web of Science ®Google Scholar
• Klindworth A, Pruesse E, Schweer T, Peplies J, Quast C, Horn M, Glöckner FO. 2013. Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies. Nucleic Acids Res. 41:1–11.
   PubMed Web of Science ®Google Scholar
• Kovatcheva-Datchary P, Nilsson A, Akrami R, Lee YS, De Vadder F, Arora T, Hallen A, Martens E, Björck I, Bäckhed F, et al. 2015. Dietary fiber-induced improvement in glucose metabolism is associated with increased abundance of Prevotella. Cell Metab. 22(6):971–982.
   PubMed Web of Science ®Google Scholar
• Lewis JS, Heaton WK. 1997. Increasing butyrate concentration in the distal colon by accelerating intestinal transit. Gut. 41(2):245–251.
   PubMed Web of Science ®Google Scholar
• Liu R, Hong J, Xu X, Feng Q, Zhang D, Gu Y, Shi J, Zhao S, Liu W, Wang X, et al. 2017. Gut microbiome and serum metabolome alterations in obesity and after weight-loss intervention. Nat Med. 23(7):859–868.
   PubMed Web of Science ®Google Scholar
• McDonald JE, Larsen N, Pennington A, Connolly J, Wallis C, Rooks DJ, Hall N, McCarthy AJ, Allison HE. 2016. Characterising the canine oral microbiome by direct sequencing of reverse-transcribed rRNA molecules. PLoS One. 11(6):e0157046.
   PubMed Web of Science ®Google Scholar
• Nicholson JK, Holmes E, Kinross J, Burcelin R, Gibson G, Jia W, Pettersson S. 2012. Host-gut microbiota metabolic interactions. Science. 336(6086):1262–1267.
   PubMed Web of Science ®Google Scholar
• Roager HM, Hansen LBS, Bahl MI, Frandsen HL, Carvalho V, Gøbel RJ, Dalgaard MD, Plichta DR, Sparholt MH, Vestergaard H, et al. 2016. Metabolism and mucosal turnover in the gut. Nat Microbiol. 1(9):16093.
   PubMed Web of Science ®Google Scholar
• Sawicki CM, Livingston KA, Obin M, Roberts SB, Chung M, McKeown NM. 2017. Dietary fiber and the human gut microbiota: application of evidence mapping methodology. Nutrients. 9(2):pii:E125.
   Web of Science ®Google Scholar
• Stephen AM, Cummings JH. 1980. The microbial contribution to human faecal mass. J Med Microbiol. 13(1):45–56.
   PubMed Web of Science ®Google Scholar
• Stephen AM, Wiggins HS, Cummings JH. 1987. Effect of changing transit time on colonic microbial metabolism in man. Gut. 28(5):601–609.
   PubMed Web of Science ®Google Scholar
• Stephen AM, Champ MM, Cloran SJ, Fleith M, van Lieshout L, Mejborn H, Burley VJ. 2017. Dietary fibre in Europe: current state of knowledge on definitions, sources, recommendations, intakes and relationships to health. Nutr Res Rev. 30(2):149–190.
   PubMed Web of Science ®Google Scholar
• Tigchelaar EF, Bonder MJ, Jankipersadsing SA, Fu J, Wijmenga C, Zhernakova A. 2015. Gut microbiota composition associated with stool consistency. Gut. 65(3):540–542.
   PubMed Web of Science ®Google Scholar
• Van den Abbeele P, Taminiau B, Pinheiro I, Duysburgh C, Jacobs H, Pijls L, Marzorati M. 2018. Arabinoxylo-oligosaccharides and inulin impact inter-individual variation on microbial metabolism and composition, which immunomodulates human cells. J Agric Food Chem. 66(5):1121–1130.
   PubMed Web of Science ®Google Scholar
• Vandeputte D, Falony G, Vieira-Silva S, Tito RY, Joossens M, Raes J. 2015. Stool consistency is strongly associated with gut microbiota richness and composition, enterotypes and bacterial growth rates. Gut. 65(1):57–62.
   PubMed Web of Science ®Google Scholar
• Vandeputte D, Falony G, Vieira-Silva S, Wang J, Sailer M, Theis S, Verbeke K, Raes J. 2017. Prebiotic inulin-type fructans induce specific changes in the human gut microbiota. Gut. 66(11):1968–1974.
   PubMed Web of Science ®Google Scholar
• Verbeke KA, Boobis AR, Chiodini A, Edwards CA, Franck A, Kleerebezem M, Nauta A, Raes J, van Tol EAF, Tuohy KM, et al. 2015. Towards microbial fermentation metabolites as markers for health benefits of prebiotics. Nutr Res Rev. 28(1):42–66.
   PubMed Web of Science ®Google Scholar
• Zeevi D, Korem T, Zmora N, Israeli D, Rothschild D, Weinberger A, Ben-Yacov O, Lador D, Avnit-Sagi T, Lotan-Pompan M, et al. 2015. Personalized nutrition by prediction of glycemic responses. Cell. 163(5):1079–1094.
   PubMed Web of Science ®Google Scholar
• Zhernakova A, Kurilshikov A, Bonder MJ, Tigchelaar EF, Schirmer M, Vatanen T, Mujagic Z, Vila AV, Falony G, Vieira-Silva S, et al. 2016. Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity. Science. 352(6285):565–569.
   PubMed Web of Science ®Google Scholar