Vitamin B and vitamin D as modulators of gut microbiota in overweight individuals

References

• Albarracin CA, Fuqua BC, Evans JL, Goldfine ID. 2008. Chromium picolinate and biotin combination improves glucose metabolism in treated, uncontrolled overweight to obese patients with type 2 diabetes. Diabetes Metab Res Rev. 24(1):41–51.
   PubMed Web of Science ®Google Scholar
• Almuzara M, Cittadini R, Estraviz ML, Ellis A, Vay C. 2018. First report of Comamonas kerstersii causing urinary tract infection. New Microbes New Infect. 24:4–7.
   PubMedGoogle Scholar
• Bahmani F, Karamali M, Shakeri H, Asemi Z. 2014. The effects of folate supplementation on inflammatory factors and biomarkers of oxidative stress in overweight and obese women with polycystic ovary syndrome: a randomized, double-blind, placebo-controlled clinical trial. Clin Endocrinol. 81(4):582–587.
   PubMed Web of Science ®Google Scholar
• Bailey RL, Dodd KW, Goldman JA, Gahche JJ, Dwyer JT, Moshfegh AJ, Sempos CT, Picciano MF. 2010a. Estimation of total usual calcium and vitamin D intakes in the United States. J Nutr. 140(4):817–822.
   PubMed Web of Science ®Google Scholar
• Bailey RL, Gahche JJ, Lentino CV, Dwyer JT, Engel JS, Thomas PR, Betz JM, Sempos CT, Picciano MF. 2010b. Dietary supplement use in the United States, 2003–2006. J Nutr. 141(2):261–266.
   PubMed Web of Science ®Google Scholar
• Bailey RL, Gahche JJ, Miller PE, Thomas PR, Dwyer JT. 2013. Why US adults use dietary supplements. JAMA Intern Med. 173(5):355–361.
   PubMed Web of Science ®Google Scholar
• Baltaci D, Kutlucan A, Turker Y, Yilmaz A, Karacam S, Deler H, Ucgun T, Kara IH. 2013. Association of vitamin B12 with obesity, overweight, insulin resistance and metabolic syndrome, and body fat composition; primary care-based study. Med Glas (Zenica). 10:203–210.
   PubMedGoogle Scholar
• Barbera P, Kozlov AM, Czech L, Morel B, Darriba D, Flouri T, Stamatakis A. 2019. EPA-ng: massively parallel evolutionary placement of genetic sequences. Syst Biol. 68(2):365–369.
   PubMed Web of Science ®Google Scholar
• Clavel T, Duck W, Charrier C, Wenning M, Elson C, Haller D. 2010. Enterorhabdus caecimuris sp. nov., a member of the family Coriobacteriaceae isolated from a mouse model of spontaneous colitis, and emended description of the genus Enterorhabdus Clavel et al. 2009. Int J Syst Evol Microbiol. 60(7):1527–1531.
   PubMedGoogle Scholar
• Colldén H, Landin A, Wallenius V, Elebring E, Fändriks L, Nilsson M, Ryberg H, Poutanen M, Sjögren K, Vandenput L, et al. 2019. The gut microbiota is a major regulator of androgen metabolism in intestinal contents. Am J Physiol Endocrinol Metab. 317(6):E1182–E1192.
   PubMed Web of Science ®Google Scholar
• Conlon M, Bird A. 2014. The impact of diet and lifestyle on gut microbiota and human health. Nutrients. 7(1):17–44.
   PubMed Web of Science ®Google Scholar
• Czech L, Stamatakis A. 2019. Scalable methods for analyzing and visualizing phylogenetic placement of metagenomic samples. PLoS One. 14(5):e0217050.
   PubMed Web of Science ®Google Scholar
• Da R, Aa A, Ms K, Sn I, Sa L, Sn P, Ps N, Al O. 2019. Micronutrient Requirements and Sharing Capabilities of the Human Gut Microbiome. Frontiers in microbiology. 10:1316.
   Google Scholar
• Degnan PH, Taga ME, Goodman AL. 2014. Vitamin B12 as a modulator of gut microbial ecology. Cell Metab. 20(5):769–778.
   PubMed Web of Science ®Google Scholar
• Dehkordi EH, Sedehi M, Shahraki ZG, Najafi R. 2016. Effect of folic acid on homocysteine and insulin resistance of overweight and obese children and adolescents. Adv Biomed Res. 5(1):88.
   PubMedGoogle Scholar
• Dh P, Gw T, P H, Rg B. 2014. STAMP: statistical analysis of taxonomic and functional profiles. Bioinformatics (Oxford, England). 30:3123–3124.
   PubMed Web of Science ®Google Scholar
• Douglas GM, Beiko RG, Langille M. 2018. Predicting the functional potential of the microbiome from marker genes using PICRUSt. Methods Mol Biol. 1849:169–177.
   PubMedGoogle Scholar
• Eddy SR. 2011. Accelerated profile HMM searches. PLoS Comput Biol. 7(10):e1002195.
   PubMed Web of Science ®Google Scholar
• Ejtahed HS, Angoorani P, Hasani-Ranjbar S, Siadat SD, Ghasemi N, Larijani B, Soroush AR. 2018. Adaptation of human gut microbiota to bariatric surgeries in morbidly obese patients: a systematic review. Microb Pathog. 116:13–21.
   PubMed Web of Science ®Google Scholar
• Fitzpatrick CR, Copeland J, Wang PW, Guttman DS, Kotanen PM, Johnson MT. 2018. Assembly and ecological function of the root microbiome across angiosperm plant species. Proc Natl Acad Sci U S A. 115(6):E1157–E1165.
   PubMed Web of Science ®Google Scholar
• Fu L, Qiu Y, Shen L, Cui C, Wang S, Wang S, Xie Y, Zhao X, Gao X, Ning G, et al. 2018. The delayed effects of antibiotics in type 2 diabetes, friend or foe? J Endocrinol. 238(2):137–149.
   PubMed Web of Science ®Google Scholar
• Geiker NRW, Veller M, Kjoelbaek L, Jakobsen J, Ritz C, Raben A, Astrup A, Lorenzen JK, Larsen LH, Bugel S. 2018. Effect of low energy diet for eight weeks to adults with overweight or obesity on folate, retinol, vitamin B12, D and E status and the degree of inflammation: a post hoc analysis of a randomized intervention trial. Nutr Metab (Lond)). 15(1):24.
   PubMedGoogle Scholar
• Giannelli V, Di Gregorio V, Iebba V, Giusto M, Schippa S, Merli M, Thalheimer U. 2014. Microbiota and the gut-liver axis: bacterial translocation, inflammation and infection in cirrhosis. World J Gastroenterol. 20(45):16795–16810.
   PubMed Web of Science ®Google Scholar
• Hall M, Beiko RG. 2018. 16S rRNA Gene Analysis with QIIME2. Methods Mol Biol. 1849:113–129.
   PubMedGoogle Scholar
• Kameyama K, Itoh K. 2014. Intestinal colonization by a Lachnospiraceae bacterium contributes to the development of diabetes in obese mice. Microb Environ. 29(4):427–430.
   PubMed Web of Science ®Google Scholar
• Kaplan RC, Wang Z, Usyk M, Sotres-Alvarez D, Daviglus ML, Schneiderman N, Talavera GA, Gellman MD, Thyagarajan B, Moon JY, et al. 2019. Gut microbiome composition in the Hispanic Community Health Study/Study of Latinos is shaped by geographic relocation, environmental factors, and obesity. Genome Biol. 20(1):219.
   PubMed Web of Science ®Google Scholar
• Kelly CJ, Alexeev EE, Farb L, Vickery TW, Zheng L, Eric LC, Kitzenberg DA, Battista KD, Kominsky DJ, Robertson CE, et al. 2019. Oral vitamin B12 supplement is delivered to the distal gut, altering the corrinoid profile and selectively depleting Bacteroides in C57BL/6 mice. Gut Microbes. 10(6):654–662.
   PubMedGoogle Scholar
• Kerns JC, Arundel C, Chawla LS. 2015. Thiamin deficiency in people with obesity. Adv Nutr. 6(2):147–153.
   PubMed Web of Science ®Google Scholar
• Lotfi-Dizaji L, Mahboob S, Aliashrafi S, Vaghef-Mehrabany E, Ebrahimi-Mameghani M, Morovati A. 2019. Effect of vitamin D supplementation along with weight loss diet on meta-inflammation and fat mass in obese subjects with vitamin D deficiency: a double-blind placebo-controlled randomized clinical trial. Clin Endocrinol. 90(1):94–101.
   PubMed Web of Science ®Google Scholar
• Louca S, Doebeli M. 2018. Efficient comparative phylogenetics on large trees. Bioinformatics. 34(6):1053–1055.
   PubMed Web of Science ®Google Scholar
• Luedde M, Winkler T, Heinsen FA, Ruhlemann MC, Spehlmann ME, Bajrovic A, Lieb W, Franke A, Ott SJ, Frey N. 2017. Heart failure is associated with depletion of core intestinal microbiota. ESC Heart Fail. 4(3):282–290.
   PubMed Web of Science ®Google Scholar
• Mcdonald D, Hyde E, Debelius JW, Morton JT, Gonzalez A, Ackermann G, Aksenov AA, Behsaz B, Brennan C, Chen Y, et al. 2018. American Gut: an open platform for citizen science microbiome research. mSystems. 3(3):e00031–18.
   PubMed Web of Science ®Google Scholar
• Mousa A, Naderpoor N, Wilson K, Plebanski M, De Courten MPJ, Scragg R, De Courten B. 2020. Vitamin D supplementation increases adipokine concentrations in overweight or obese adults. Eur J Nutr. 59(1):195–204.
   PubMed Web of Science ®Google Scholar
• Naruta E, Buko V. 2001. Hypolipidemic effect of pantothenic acid derivatives in mice with hypothalamic obesity induced by aurothioglucose. Exp Toxicol Pathol. 53(5):393–398.
   PubMedGoogle Scholar
• Oliai Araghi S, van Dijk SC, Ham AC, Brouwer-Brolsma EM, Enneman AW, Sohl E, Swart KMA, van der Zwaluw NL, van Wijngaarden JP, Dhonukshe-Rutten RAM, et al. 2015. BMI and body fat mass is inversely associated with vitamin D levels in older individuals. J Nutr Health Aging. 19(10):980–985.,
   PubMed Web of Science ®Google Scholar
• Pramono A, Jocken JWE, Essers YPG, Goossens GH, Blaak EE. 2019. Vitamin D and tissue-specific insulin sensitivity in humans with overweight/obesity. J Clin Endocrinol Metab. 104(1):49–56.
   PubMed Web of Science ®Google Scholar
• Rial SA, Karelis AD, Bergeron KF, Mounier C. 2016. Gut microbiota and metabolic health: the potential beneficial effects of a medium chain triglyceride diet in obese individuals. Nutrients. 8(5):281.
   Web of Science ®Google Scholar
• Ribeiro FM, Ribeiro CFA, G ACM, Castro AP, Almeida JA, Franco OL, Petriz BA. 2019. Limited Effects of Low-to-Moderate Aerobic Exercise on the Gut Microbiota of Mice Subjected to a High-Fat Diet. Nutrients. 11(1):149.
   Web of Science ®Google Scholar
• Rodionov DA, Arzamasov AA, Khoroshkin MS, Iablokov SN, Leyn SA, Peterson SN, Novichkov PS, Osterman AL. 2019. Micronutrient requirements and sharing capabilities of the human gut microbiome. Front Microbiol. 10:1316.
   PubMed Web of Science ®Google Scholar
• Seidell JC, Halberstadt J. 2015. The global burden of obesity and the challenges of prevention. Ann Nutr Metab. 66(2):7–12.
   PubMedGoogle Scholar
• Sharma V, Rodionov DA, Leyn SA, Tran D, Iablokov SN, Ding H, Peterson DA, Osterman AL, Peterson SN. 2019. B-Vitamin sharing promotes stability of gut microbial communities. Front Microbiol. 10:1485.
   PubMed Web of Science ®Google Scholar
• Sittipo P, Shim JW, Lee YK. 2019. Microbial metabolites determine host health and the status of some diseases. Int J Mol Sci. 20:E5296.
   PubMed Web of Science ®Google Scholar
• Waterhouse M, Hope B, Krause L, Morrison M, Protani MM, Zakrzewski M, Neale RE. 2019. Vitamin D and the gut microbiome: a systematic review of in vivo studies. Eur J Nutr. 58(7):2895–2910.
   PubMed Web of Science ®Google Scholar
• Wu GD, Chen J, Hoffmann C, Bittinger K, Chen YY, Keilbaugh SA, Bewtra M, Knights D, Walters WA, Knight R, et al. 2011. Linking long-term dietary patterns with gut microbial enterotypes. Science. 334(6052):105–108.
   PubMed Web of Science ®Google Scholar
• Wu Y, Chi X, Zhang Q, Chen F, Deng X. 2018. Characterization of the salivary microbiome in people with obesity. PeerJ. 6:e4458.
   PubMed Web of Science ®Google Scholar
• Xie J, Peters BM, Li B, Li L, Yu G, Xu Z, Shirtliff ME. 2017. Clinical features and antimicrobial resistance profiles of important Enterobacteriaceae pathogens in Guangzhou representative of Southern China, 2001–2015. Microb Pathog. 107:206–211.
   PubMed Web of Science ®Google Scholar
• Ye Y, Doak TG. 2009. A parsimony approach to biological pathway reconstruction/inference for genomes and metagenomes. PLoS Comput Biol. 5(8):e1000465.
   PubMed Web of Science ®Google Scholar
• Zhang HH, Liu J, Lv YJ, Jiang YL, Pan JX, Zhu YJ, Huang MG, Zhang SK. 2020. Changes in intestinal microbiota of type 2 diabetes in mice in response to dietary supplementation with instant tea or matcha. Can J Diabetes. 44(1):44–52.
   PubMed Web of Science ®Google Scholar