1,058
Views
36
CrossRef citations to date
0
Altmetric
Original Articles

Molecular phylogeny of the marine sand-dwelling dinoflagellate Herdmania litoralis and an emended description of the closely related planktonic genus Archaeperidinium Jörgensen

, , , &
Pages 98-112 | Received 20 Jun 2010, Accepted 07 Feb 2011, Published online: 08 Apr 2011

References

  • Abé , TH . 1936 . Report of the biological survey of Mutsu Bay. 29. Notes on the protozoan fauna of Mutsu Bay. II. Genus Peridinium; subgenus Archaeperidinium . Sci. Rep. Tohoku Univ., Ser. 4, Biology , 10 : 639 – 686 .
  • Abé , TH . 1981 . Studies on the family Peridinidae. An unfinished monograph of armoured Dinoflagellata . Publ. Seto Mar. Biol. Lab., Special Publ. Ser. , 6 : 1 – 413 .
  • Balech , E . 1964a . El plancton de Mar del Plata durante el periodo 1961–62 (Buenos Aires, Argentina) . Bol. Inst. Biología Marina, Mar del Plata, Argentina , 4 : 1 – 49 .
  • Balech , E . 1964b . Tercera contribucion al conocimiento del genero Peridinium . Revista Inst. Nac. Invest. Ci., Hidrobiol. , 1 : 179 – 201 .
  • Balech , E . 1974 . El genero Protoperidinium Bergh, 1881 (Peridinium Ehrenberg, 1831, Partim) . Revista Mus. Argent. Ci. Nat., Bernardino Rivadavia Inst. Nac. Invest. Ci. Nat., Hidrobiol. , 4 : 1 – 79 .
  • Chomérat , N and Couté , A . 2008 . Protoperidinium bolmonense sp. nov. (Peridiniales, Dinophyceae), a small dinoflagellate from a brackish hypereutrophic lagoon (south of France) . Phycologia , 47 : 392 – 403 .
  • Dodge , JD . 1981 . Three new generic names in the Dinophyceae; Herdmania, Sclerodinium and Triadinium to replace Heteraulacus and Goniodoma . Br. Phycol. J. , 16 : 273 – 280 .
  • DODGE, J.D. (1982). Marine Dinoflagellates of the British Isles. Her Majesty's Stationery Office, London. 303 pp.
  • FENSOME, R.A., TAYLOR, F.J.R., NORRIS, G., SARJEANT, W.A.S., WHARTON, D.I. & WILLIAMS, G.L. (1993). A Classification of Living and Fossil Dinoflagellates. Micropaleontology Special Publication 7. Sheridan Press, Hanover, Pennsylvania.
  • Fukuyo , Y , Kittaka , J and Hirano , R . 1977 . Studies on the cysts of marine dinoflagellates. I. Protoperidinium minutum (Kofoid) Loeblich . Bull. Plankt. Soc. Jap. , 24 : 11 – 18 .
  • Gribble , KE and Anderson , DM . 2007 . High intraindividual, intraspecific, and interspecific variability in large subunit ribosomal DNA in the heterotrophic dinoflagellates Protoperidinium, Diplopsalis, and Preperidinium (Dinophyceae) . Phycologia , 46 : 315 – 324 .
  • Handy , SM , Bachvaroff , TR , Timme , RE , Coats , DW , Kim , S and Delwiche , CF . 2009 . Phylogeny of four dinophysiacean genera (Dinophyceae, Dinophysiales) Based on rDNA sequences from single cells and environmental samples . J. Phycol. , 45 : 1163 – 1174 .
  • Higgins , D , Thompson , J , Gibson , T , Thompson , JD , Higgins , DG and Gibson , TJ . 1994 . CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice . Nucleic Acids Res. , 22 : 4673 – 4680 .
  • Hoppenrath , M . 2000a . Morphology and taxonomy of the marine sand-dwelling genus Thecadinium (Dinophyceae), with the description of two new species from the North German Wadden Sea . Phycologia , 39 : 96 – 108 .
  • Hoppenrath , M . 2000b . An emended description of Herdmania litoralis Dodge (Dinophyceae) including the plate formula . Nova Hedwigia , 71 : 481 – 489 .
  • Hoppenrath , M . 2000c . Morphology and taxonomy of six marine sand-dwelling Amphidiniopsis species (Dinophyceae, Peridiniales), four of them new, from the German Bight, North Sea . Phycologia , 39 : 482 – 497 .
  • Hoppenrath , M , Saldarriaga , JF , Schweikert , M , Elbrächter , M and Taylor , FJR . 2004 . Description of Thecadinium mucosum sp. nov. (Dinophyceae), a new sand-dwelling marine dinoflagellate, and an emended description of Thecadinium inclinatum Balech . J. Phycol. , 40 : 946 – 961 .
  • HOPPENRATH, M., ELBRÄCHTER, M. & DREBES, G. (2009a). Marine Phytoplankton. Selected Microphytoplankton Species from the North Sea around Helgoland and Sylt. Kleine Senckenberg-Reihe 49. 264 pp.
  • Hoppenrath , M , Koeman , RPT and Leander , BS . 2009b . Morphology and taxonomy of a new marine sand-dwelling Amphidiniopsis species (Dinophyceae, Peridiniales), A. aculeata sp. nov., from Cap Feret, France . Mar. Biodiv. , 39 : 1 – 7 .
  • Horiguchi , T , Yoshizawa-Ebata , J and Nakayama , T . 2000 . Halostylodinium arenarium, gen. et sp. nov. (Dinophyceae), a coccoid sand-dwelling dinoflagellate from subtropical Japan . J. Phycol. , 36 : 960 – 971 .
  • Huelsenbeck , JP and Ronquist , F . 2001 . MRBAYES: Bayesian inference of phylogenetic trees . Bioinformatics , 17 : 754 – 755 .
  • Jörgensen , E . 1912 . Bericht über die von der schwedischen hydrographisch-biologischen Kommission in den schwedischen Gewässern in den Jahren 1909–10 eingesammelten Planktonproben . Svenska Hydrograph.-Biol. Komm. Skr. , 4 : 1 – 20 .
  • Kawami , H , Wezel. , R , Koeman , RPT and Matsuoka , K . 2009 . Protoperidinium tricingulatum sp. nov. (Dinophyceae), a new motile form of a round, brown, and spiny dinoflagellate cyst . Phycol. Res. , 57 : 259 – 267 .
  • Kofoid , CH . 1907 . Dinoflagellata of the San Diego Region, III. Descriptions of new species. Contributions from the Laboratory of the Marine Biological Association of the United Kingdom XVII . University of California Publications. Zoology , 3 : 299 – 340 .
  • LEBOUR, M.V. (1925). The Dinoflagellates of the Northern Seas. Marine Biological Association of the United Kingdom, Plymouth. 250 pp.
  • Maddison , DR and Maddison , WP . 2000 . MacClade 4: Analysis of Phylogeny and Character Evolution Version 4.0 , Sunderland, MA : Sinauer Associates .
  • Meunier , A . 1919 . Microplankton de la mer Flamande, Part III. Les Péridiniens . Mém. Mus. R. Hist. Natur. Belgique , 8 : 1 – 116 .
  • Okolodkov , YB . 2005 . Protoperidinium Bergh (Dinoflagellata) in the southeastern Mexican Pacific Ocean: part I . Bot. Mar. , 48 : 284 – 296 .
  • Paulsen , O . 1907 . The Peridiniales of the Danish waters . Medd. Komm. Havundersøg. Kbh., ser. Plankt. , 1 : 1 – 26 .
  • Posada , D . 2008 . jModelTest: phylogenetic model averaging . Mol. Biol. Evol. , 25 : 1253 – 1256 .
  • Ribeiro , S , Lundholm , N , Amorim , A and Ellegaard , M . 2010 . Protoperidinium minutum (Dinophyceae) from Portugal: cyst-theca relationship and phylogenetic position on the basis of single-cell SSU and LSU rDNA sequencing . Phycologia , 49 : 48 – 63 .
  • Ronquist , F and Huelsenbeck , JP . 2003 . MRBAYES 3: Bayesian phylogenetic inference under mixed models . Bioinformatics , 19 : 1572 – 1574 .
  • Saldarriaga , JF , Taylor , FJR , Cavalier-Smith , T , Menden-Deuer , S and Keeling , PJ . 2004 . Molecular data and the evolutionary history of the dinoflagellates . Eur. J. Protistol. , 40 : 85 – 111 .
  • SCHILLER, J. (1937). Dinoflagellatae (Peridineae) in monographischer Behandlung. 2. Teil, Lieferung 4. In Kryptogamen-Flora von Deutschland, Österreich und der Schweiz (Rabenhorst, L., editor). Akademische Verlagsgesellschaft, Leipzig. 589 pp.
  • Siano , R and Montresor , M . 2005 . Morphology, ultrastructure and feeding behaviour of Protoperidinium vorax sp. nov. (Dinophyceae, Peridiniales) . Eur. J. Phycol. , 40 : 221 – 232 .
  • Stamatakis , A . 2006 . RAxML-VI-HPC: Maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models . Bioinformatics , 22 : 2688 – 2690 .
  • Stamatakis , A , Hoover , P and Rougemont , J . 2008 . A rapid bootstrap algorithm for the RAxML web-servers . Syst. Biol. , 57 : 758 – 771 .
  • Takano , Y and Horiguchi , T . 2004 . Surface ultrastructure and molecular phylogenetics of four unarmored heterotrophic dinoflagellates, including the type species of the genus Gyrodinium . Phycol. Res. , 52 : 107 – 116 .
  • Tamura , K , Dudley , J , Nei , M and Kumar , S . 2007 . MEGA4: molecular evolutionary genetics analysis (MEGA) software version 4.0 . Mol. Biol. Evol. , 24 : 1596 – 1599 .
  • TAYLOR, F.J.R. (1976). Dinoflagellates from the International Indian Ocean Expedition: a Report on Material Collected by the R.V. ‘‘Anton Bruun’’ 1963–1964. E. Schweizerbart'sche Verlagsbuchhandlung, Stuttgart. 246 pp.
  • Uhlig , G . 1964 . Eine einfach methode zur extraktion der vagilen, mesopsammalen mikrofauna . Helgol. wiss. Meeresunters. , 11 : 178 – 185 .
  • Yamaguchi , A , Kawamura , H and Horiguchi , T . 2006 . A further phylogenetic study of the heterotrophic dinoflagellate genus Protoperidinium (Dinophyceae) based on small and large subunit ribosomal RNA gene sequences . Phycol. Res. , 54 : 317 – 329 .
  • Zonneveld , KAF and Dale , B . 1994 . The cyst-motile stage relationships of Protoperidinium monospinum (Paulsen) Zonneveld et Dale comb. nov. and Gonyaulax verior (Dinophyta, Dinophyceae) from the Oslo Fjord (Norway) . Phycologia , 33 : 359 – 368 .

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.