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Original Articles

Phytoplankton community diversity is influenced by environmental factors in the coastal East China Sea

, , , &
Pages 107-118 | Received 10 Sep 2014, Accepted 06 Aug 2015, Published online: 30 Nov 2015

REFERENCES

  • Akob, D.M., Mills, H.J. & Kostka, J.E. (2007). Metabolically active microbial communities in uranium-contaminated subsurface sediments. FEMS Microbiology Ecology, 59: 95–107.
  • Alonso-Saez, L., Balague, V. & Sa, E.L. (2007). Seasonality in bacterial diversity in north-west Mediterranean coastal waters: assessment through clone libraries, fingerprinting and fish. FEMS Microbiology Ecology, 60: 98–112.
  • Andersson, I. & Backlund, A. (2008). Structure and function of Rubisco. Plant Physiology and Biochemistry, 46: 275–291.
  • Aubry, F.B., Bastianini, M., Bertaggia, R., Baroni, A. & Socal, G. (2000). Seasonal dynamics of Dinophysis in coastal waters of the NW Adriatic Sea, 1990–1996. Botanica Marina, 43: 423–430.
  • Bhadury, P. & Ward, B.B. (2009). Molecular diversity of marine phytoplankton communities based on key functional genes. Journal of Phycology, 45: 1335–1347.
  • Burkhard, B. & Wessels, D.C.J. (1991). Rock inhabiting blue-green algae/cyanobacteria from hot arid regions. Archiv für Hydrobiologie, 64: 385–398.
  • Chen, G.W. & Ni, S.D. (1988). Taxonomic studies on three genera of Dinophyceae in South China Sea. Oceanologia et Limnologia Sinica, 19: 238–248. [in Chinese]
  • Chen, Y. L., Chen, H., Gong, G., Lin, Y., Jan, S. & Takahashi, M. (2004). Phytoplankton production during a summer coastal upwelling in the East China Sea. Continental Shelf Research, 24: 1321–1338.
  • Díez, B., Pedrós-Alió, C.C., Marsh, T. L. & Massana, R. (2001). Application of denaturing gradient gel electrophoresis (DGGE) to study the diversity of marine picoeukaryotic assemblages and comparison of DGGE with other molecular techniques. Applied and Environmental Microbiology, 67: 2942–2951.
  • Dillon, J.G., Tatsumi, C.M., Tandingan, P.G. & Castenholz, R.W. (2002). Effect of environmental factors on the synthesis of scytonemin, a UV-screening pigment, in a cyanobacterium, Chroococcidiopsis sp. Archives of Microbiology, 177: 322–331.
  • Dong Y., Zhao Y., Zhang W.Y., Li Y., Zhou F., Zhang W.C. & Xiao T. (2014). Bacterial diversity and community structure in the East China Sea by 454 sequencing of the 16S rRNA gene. Chinese Journal of Oceanology and Limnology, 32: 527–541.
  • Dor, I., Carl, N. & Baldinger, I. (1991). Polymorphism and salinity tolerance as a criterion for differentiation of three new species of Chroococcidiopsis, Chroococcales. Archiv für Hydrobiologie, 64: 411–421.
  • Fan, W. & Song, J. (2014). A numerical study of the seasonal variation of nutrients in the Changjiang River estuary and its adjacent area. Ecological Modelling, 291: 69–81.
  • Felsenstein, J. (1989). PHYLIP – Phylogeny Inference Package (Version 3.2). Cladistics, 5: 164–166.
  • Forney, L.J., Zhou, X. & Brown, C.J. (2004). Molecular microbial ecology: land of the one-eyed king. Current Opinion in Microbiology, 7: 210–220.
  • Furuya, K., Hayashi, M., Yabushita, Y. & Ishikawa, A. (2003). Phytoplankton dynamics in the East China Sea in spring and summer as revealed by HPLC-derived pigment signatures. Deep-sea Research Part II, 50: 367–387.
  • Gao, B. & Shao, A. (2011). Study on characteristics, mechanisms and strategies on Harmful Algal Blooms in China coastal waters. Marine Forecasts, 28: 68–77. [in Chinese]
  • Ghosh, S. & Love, N.G. (2011). Application of rbcL based molecular diversity analysis to algae in wastewater treatment plants. Bioresource Technology, 102: 3619–3622.
  • Gong, G., Wen, Y., Wang, B. & Liu, G. (2003). Seasonal variation of chlorophyll a concentration, primary production and environmental conditions in the subtropical East China Sea. Deep-sea Research Part II, 50: 1219–1236.
  • Guo, L., Chen, Y., Wang, F., Meng, X., Xu, Z. & Zhuang, G. (2014). Effects of Asian dust on the atmospheric input of trace elements to the East China Sea. Marine Chemistry, 163: 19–27.
  • Guo, S.J., Tian, W., Dai, M.H., Liu, Z. & Sun, J. (2011). Phytoplankton assemblages in the East China Sea in summer 2009. Advances in Marine Science, 29: 474–486. [in Chinese]
  • Hall, T.A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/nt. Nucleic Acids Symposium Series, 41: 95–98.
  • Jiao, N.Z., Yang, Y.H., Hong, N., Ma, Y., Harada, S., Koshikawa, H. & Watanabe, M. (2005). Dynamics of autotrophic picoplankton and heterotrophic bacteria in the East China Sea. Continental Shelf Research, 25: 1265–1279.
  • Koike, K., Otobe, H., Takagi, M., Yoshida, T., Ogata, T. & Ishimaru, T. (2001). Recent occurrence of Dinophysis fortii, Dinophyceae in the Okkirai Bay, Sanriku, Northern Japan, and related environmental factors. Journal of Oceanography, 57: 165–175.
  • Li, C. & Luan, F. (1998). A preliminary study on the distribution of size-fractionated chlorophyl-l a in the euphotic zone of the East China Sea in spring. Marine Sciences, 4: 59–62. [in Chinese]
  • Li, J., Glibert, P.M., Zhou, M.J., Lu, S.H. & Lu, D.D. (2009). Relationships between nitrogen and phosphorus forms and ratios and the development of dinoflagellate blooms in the East China Sea. Marine Ecology Progress Series, 383: 11–26.
  • Liu, L.S., Li, Z.C, Zhou, J., Zheng, B.H. & Tang, J.L. (2011). Temporal and spatial distribution of red tide in Yangtze River Estuary and adjacent waters. Environmental Science, 32: 2497–2504. [in Chinese]
  • Liu, Z.L., Ning, X. R. & Cai, Y. M. (2001). Primary productivity and standing stock of the phytoplankton in the Hangzhou Bay to the Zhoushan Fishing Ground during autumn. Acta Oceanologica Sinica, 23: 93–99. [in Chinese]
  • Lu, S.H. & Hodgkiss, I.J. (2004). Harmful algal bloom causative collected from Hong Kong waters. Hydrobiologia, 512: 231–238.
  • Luo, M.B., Lu, J.J., Wang, Y.L., Shen, X.Q. & Chao, M. (2007). Horizontal distribution and dominant species of phytoplankton in the East China Sea. Acta Ecologica Sinica, 27: 5076–5085. [in Chinese]
  • MacKenzie, L., McNabb, P., Holland, P., Beuzenberg, V., Selwood, A. & Suzuki, T. (2002). Complex toxin profiles in phytoplankton and Greenshell mussels (Perna canaliculus), revealed by LC–MS/MS analysis. Toxicon, 40: 1321–1330.
  • Mao, D.P., Zhou, Q., Chen, C.Y. & Quan, Z.X. (2012). Coverage evaluation of universal bacterial primers using the metagenomic datasets. BMC Microbiology, 12: 66.
  • Massana, R., Balague, V. & Guillou, L. (2004). Picoeukaryotic diversity in an oligotrophic coastal site studied by molecular and culturing approaches. FEMS Microbiology Ecology, 50: 231–243.
  • Medlin, L.K. & Kaczmarska, I. (2004). Evolution of the diatoms V: morphological and cytological support for the major clades and a taxonomic revision. Phycologia, 43: 245–270.
  • Meyer, H.B., Irigoien, X. & Head, R.N. (1998). Selective feeding on natural phytoplankton by Calanus finmarchicus before, during and after the 1997 spring bloom in the Norwegian Sea. Limnology and Oceanography, 44: 154–165.
  • Nicklisch, A., Shatwell, T. & Koehler, J. (2008). Analysis and modelling of the interactive effects of temperature and light on phytoplankton growth and relevance for the spring bloom. Journal of Plankton Research, 30: 75–91.
  • Not, F., Latasa, M. & Marie, D. (2004). A single species, Micromonas pusilla (Prasinophyceae), dominates the eukaryotic picoplankton in the Western English Channel. Applied and Environmental Microbiology, 70: 4064–4072.
  • Not, F., Latasa, M., Massana, R., Colson, C., Marie, D. & Eikrem, W. (2005). Late summer community composition and abundance of photosynthetic picoeukaryotes in Norwegian and Barents Seas. Limnology and Oceanography, 50: 1677–1686.
  • Paul, J.H., Alfreider, A. & Wawrik, B. (2000). Micro- and macrodiversity in rbcL sequences in ambient phytoplankton populations from the southeastern Gulf of Mexico. Marine Ecology Progress Series, 198: 9–18.
  • Pinhassi, J. & Hagstrom, A. (2000). Seasonal succession in marine bacterioplankton. Aquatic Microbial Ecology, 21: 245–256.
  • Prasad, A., Nienow, J.A. & Livingston R.J. (2002). The marine diatom genus Tryblioptychus hendey (Thalassiosiraceae, Coscinodiscophyceae): fine structure, taxonomy, systematics and distribution. Diatom Research, 17: 291–308.
  • Romari, K. & Vaulot, D. (2004). Composition and temporal variability of picoeukaryote communities at a coastal site of the English Channel from 18S rDNA sequences. Limnology and Oceanography, 49: 784–798.
  • Samanta, B., Bhadury, P. & Mock, T. (2014). Analysis of diversity of chromophytic phytoplankton in a mangrove ecosystem using rbcL gene sequencing. Journal of Phycology, 50: 328–340.
  • Schloss, P.D. & Handelsman, J. (2005). Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Applied and Environmental Microbiology, 71: 1501–1506.
  • Shamsudin, L. (1999). The blue green algal bloom in the nearshore waters of Cukai Bay facing the South China Sea. Environmental Monitoring and Assessment, 59: 123–134.
  • Sidari, L., Cok, S., Cabrini, M., Tubaro, A. & Honsell, G. (1995). Temporal distribution of toxic phytoplankton in the Gulf of Trieste (Northern Adriatic Sea) in 1991 and 1992. In Proceedings of Sixth International Conference on Toxic Marine Phytoplankton (Lassus, P., Arzul, G., Erard, E., Gentien, P. & Marcaillou, C., editors), 231–236. Lavoisier, Intercept Ltd, Paris.
  • Smith, S., Vigilant, L. & Morin, P.A. (2002). The effects of sequence length and oligonucleotide mismatches on 5’ exonuclease assay efficiency. Nucleic Acids Research, 30: 1–11.
  • Sommer, U. (1994). Are marine diatoms favored by high Si: N ratio? Marine Ecology Progress Series, 115: 309–315.
  • Sun, J., Yu, Z.G., Gao, Y.H., Zhou, Q.Q., Zhen, Y. & Chen, H.T. (2010). Phytoplankton diversity in the East China Sea and Yellow Sea measured by PCR-DGGE and its relationships with environmental factors. Chinese Journal of Oceanology and Limnology, 28: 315–322.
  • Tabita, F. R. (1999). Microbial ribulose 1, 5-bisphosphate carboxylase/oxygenase: a different perspective. Photosynthesis Research, 60: 1–28.
  • Tabita, F.R., Hanson, T.E., Li, H.Y., Satagopan, S., Singh, J. & Chan, S. (2007). Function, structure, and evolution of the RubisCO-like proteins and their RubisCO homologs. Microbiology and Molecular Biology Reviews, 71: 576–599.
  • Tabita, F.R., Hanson, T.E., Satagopan, S., Witte, B.H. & Kreel, N.E. (2008). Phylogenetic and evolutionary relationships of RubisCO and the RubisCO-like proteins and the functional lessons provided by diverse molecular forms. Philosophical Transactions of the Royal Society B, 363: 2629–2640.
  • Takahashi, Y., Takishita, K., Koike, K., Maruyama, T., Nakayama, T. & Kobiyama, A. (2005). Development of molecular probes for Dinophysis, Dinophyceae plastid: a tool to predict blooming and explore plastid origin. Marine Biotechnology, 7: 95–103.
  • Tamura, K., Dudley, J. & Nei, M. (2007). MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Molecular Biology and Evolution, 224: 1596–1599.
  • Theriot, E.C., Cannone, J.J., Gutell, R. R. & Alverson, A. J. (2009). The limits of nuclear-encoded SSU rDNA for resolving the diatom phylogeny. European Journal of Phycology, 44: 277–290.
  • Thompson, J.D., Gibson, T.J. & Plewniak, F. (1997). The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research, 25: 4876–4882.
  • Tian, R. & An, J. (2012). Relationship between aerosol transport routes and red tide occurrences in the East China Sea. Environmental Earth Sciences, 9: 32–38.
  • Tian, W., Sun, J., Fan, X.P. & Wang, M. (2010). Phytoplankton community in coastal waters of the East China Sea in spring 2008. Advances in Marine Science, 28: 170–178. [in Chinese]
  • Treusch, A. H., Demir-Hilton, E. & Vergin, K. L. (2011). Phytoplankton distribution patterns in the northwestern Sargasso Sea revealed by small subunit rRNA genes from plastids. SME Journal, 6: 481–492.
  • Varela-Alvarez, E., Andreakis, N., Lago-Leston, A., Pearson, G.A., Serrao, E.A., Procaccini, G., Duarte, C. M. & Marba, N. (2006). Genomic DNA isolation from green and brown algae (Caulerpales and Fucales) for microsatellite library construction. Journal of Phycology, 42: 741–745.
  • Vaulot, D., Eikrem, W., Viprey, M. & Moreau, H. (2008). The diversity of small eukaryotic phytoplankton(≤ 3µm) in marine ecosystems. FEMS Microbiology Ecology, 32: 795–820.
  • Von Wintzingerode, F., Gobel, U.B. & Stackebrandt, E. (1997). Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis. FEMS Microbiology Ecology, 21: 213–229.
  • Wang, J.H., Qin, Y.T., Liu, C.C., Sun, Y., Cheng, X. & Xu, R. (2007). A background investigation of toxic algae and biotoxin in the Yangtze estuary. Transactions of Oceanology and Limnology, 53: 52–61. [in Chinese]
  • Wang, X.D., Sun, J., Liu, D.Y. & Wang, M. (2005). Control of phytoplankton community by marine mesozooplankton selective grazing. Advances in Marine Science, 23: 525–533. [in Chinese]
  • Weng, H.X., Tian, R.X., Ji, Z.Q. & Yu, X.A. (2011). Potential relationships between atmospheric particulate matter transported by winter monsoons and red tides in the East China Sea. Chinese Science Bulletin, 56: 297–305.
  • Wilhelm, G. & Avan, N. A. (2001). Taxon-specific growth and selective microzooplankton grazing of phytoplankton in the Northeast Atlantic. Journal of Marine Systems, 30: 241–261.
  • Wojtal, A.Z. & Kwandrans, J. (2006). Diatoms of the Wyżyna Krakowsko-Częstochowska upland (Spoland) – Coscinodiscophyceae (Thalassiosirophycidae). Polish Botanical Journal, 51: 177–207.
  • Worden, A.Z., Lee, J-H. & Mock, T. (2009). Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryote Micromonas. Science, 10: 267–272.
  • Wu, H., Zhu, J.R., Shen, J. & Wang, H. (2011). Tidal modulation on the Changjiang River plume in summer. Journal of Geophysical Research, 116: doi 10.1029/2011JC007209.
  • Xia, J.L., Liu, P., Wan, M.X., Wang, R.M., Li, L. & Qiu, G.Z. (2010). Cloning and sequence analysis of rbcL gene from Chlorella sorokiniana and comparison with 18S rDNA gene in taxonomy. Progress in Modern Biomedicine, 10: 4601–4605. [in Chinese]
  • Xiao, T., Yue, H. D. & Zhang, W. C. & Wang, R. (2003). Distribution of Synechococcus spp. in the East China Sea and its role in microbial food web. Oceanologia et Limnologia Sinica, 34: 33–43. [in Chinese]
  • Yang, S., Han, X., Zhang, G., Sun, B., Wang, X. & Shi, X. (2014). Seasonal changes in phytoplankton biomass and dominant species in the Changjiang River estuary and adjacent seas: General trends based on field survey data 1959–2009. Journal of Ocean University of China, 13: 926–934.
  • Yasumoto, T., Oshima, Y., Sugaware, W., Fukuyo, Y., Oguri, H., Igarashi, T. & Fujita, N. (1980). Identification of Dinophysis fortii as the causative organism of diarrhetic shellfish poisoning. Bulletin of the Japanese Society for the Science of Fish, 46: 1405–1411.
  • Zhang, W. & Wang, R. (2001). Grazing pressure of microzooplankton on phytoplankton and primary production in marine ecosystem. Acta Oceanologica Sinica, 21: 1360–1366. [in Chinese]
  • Zhaxybayeva, O., Doolittle, W.F., Papke, R.T. & Gogarten. J.P. (2009). Intertwined evolutionary histories of marine Synechococus and Prochlorococcus marinus. Genome Biology and Evolution, l: 325–339.
  • Zhou, M., Li, J., Luckas, B., Yu, R. C., Yan, T. & Hummert, C. (1999). A recent shellfish toxin investigation in China. Marine Pollution Bulletin, 39: 331–334.
  • Zhou, M., Shen, Z. & Yu, R. (2008). Responses of a coastal phytoplankton community to increased nutrient input from the Changjiang (Yangtze) River. Continental Shelf Research, 28: 1483–1489.
  • Zhu, L., Chen, Y., Guo, L. & Wang, F. (2013). Estimate of dry deposition fluxes of nutrients over the East China Sea: the implication of aerosol ammonium to non-sea-salt sulfate ratio in nutrient deposition of coastal oceans. Atmospheric Environment, 69: 131–138.
  • Zingone, A., Sarno, D. & Forlani, G. (1999). Seasonal dynamics in the abundance of Micromonas pusilla (Prasinophyceae) and its viruses in the Gulf of Naples (Mediterranean Sea). Journal of Plankton Research, 21: 2143–2159.

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