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Articles

Genetic differentiation and distribution of Pyropia acanthophora (Bangiales, Rhodophyta) in the Philippines

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Pages 104-115 | Received 25 Jan 2016, Accepted 26 Jul 2016, Published online: 19 Jan 2017

References

  • Aguilar-Rosas, R. & Aguilar-Rosas, L.E. (2003). El género Porphyra (Bangiales, Rhodophyta) en la costa Pacifico di México. I. Porphyra suborbiculata Kjellman. Hydrobiologia, 13: 51–56.
  • Arnaud-Haond, S., Vonau, V., Rouxel, C., Bonhomme, F., Prou, J., Goyard, E. & Boudry, P. (2008). Genetic structure at different spatial scales in the pearl oyster (Pinctada margaritifera cumingii) in French Polynesian lagoons: beware of sampling strategy and genetic patchiness. Marine Biology, 155: 147–157.
  • Brodie, J., Hayes, P.K., Barker, G.L., Irvine, L.M. & Bartsch, I. (1998). A reappraisal of Porphyra and Bangia (Bangiales, Rhodophyta) in the northeast Atlantic based on the rbcL-rbcS intergenic spacer. Journal of Phycology, 34: 1069–1074.
  • Brodie, J., Bartsch, I., Neefus, C., Orfinidis, S., Bray, T. & Mathieson, A. (2007). New insights into the cryptic diversity of the North Atlantic-Mediterranean ‘Porphyra leucosticta’ complex: P. olivii sp. nov. and P. rosengurttii (Bangiales, Rhodophyta). European Journal of Phycology, 42: 3–28.
  • Broom, J.R., Jones, W.A., Hill, D.F., Knight, G.A. & Nelson, W.A. (1999). Species recognition in New Zealand Porphyra using 18S rDNA sequencing. Journal of Applied Phycology, 11: 421–428.
  • Broom, J.E., Nelson, W.A., Yarish, C., Jones, W.A., Aguilar-Rosas, R. & Aguilar-Rosas, L.E. (2002). A reassessment of the taxonomic status of Porphyra suborbiculata, Porphyra carolinensis and Porphyra lilliputiana (Bangiales, Rhodophyta) based on molecular and morphological data. European Journal of Phycology, 37: 227–235.
  • Broom, J.E., Nelson, W.A., Farr, T.J., Phillips, L.E. & Clayton M. (2010). Relationships of the Porphyra (Bangiales, Rhodophyta) flora of the Falkland Islands: a molecular survey using rbcL and nSSU sequence data. Australian Systematic Botany, 23: 27–37.
  • Clement, M., Posada, D. & Crandall, K.A. (2000). TCS: a computer program to estimate gene genealogies. Molecular Ecology, 9: 1657–1659.
  • Cordero, Jr., P.A. (1974). Phycological observations I: Genus Porphyra of the Philippines, its species and their occurrences. Bulletin of Japanese Society of Phycology, 22: 134–142.
  • Creed, M., Fujii, M.T., Barreto, M.B. de B., Guimarães, S.M.P. de B., Cassano, V., Pereira, S.M.B., Carvalho, M. de F., de O. & Khader, S. (2010). Rhodophyceae. In Catálogo de plantas e fungos do Brasil Vol. 1 (Forzza, R.C., editor), 416–436. Andrea Jakobsson Estúdio, Instituto de Pesquisas Jardim Botânico do Rio de Janeiro, Rio de Janeiro.
  • Dumilag, R.V., Aguinaldo, Z-Z., Mintu, C.B., Quinto, M.P., Ame, E.C., Andres, R.C., Monotilla, W. D. & Yap, S.L. (2016). Morphological and molecular confirmation of the occurrence of Pyropia tanegashimensis (Bangiales, Rhodophyta) from Palaui Is., Sta. Ana, Cagayan, Philippines. Phytotaxa, 255: 83–90.
  • Faugeron, S., Valero, M., Destombe, C., Martínez, E.A. & Correa J.A. (2001). Hierarchical spatial structure and discriminant analysis of genetic diversity in the red alga Mazzaella laminarioides (Gigartinales, Rhodophyta). Journal of Phycology, 37: 705–716.
  • Fernández, R., Lemer, S., McIntyre, E. & Giribet, G. (2014). Comparative phylogeography and population genetic structure of three widespread mollusc species in the Mediterranean and near Atlantic. Marine Ecology, 36: 701–715.
  • Freshwater, W.D., Tudor, K., O’Shaughnessy, K. & Wysor, B. (2010). DNA barcoding in the red algal order Gelidiales: comparison of COI with rbcL and verification of the “barcoding gap”. Cryptogamie, Algologie, 31: 435–449.
  • Geraldino, P.J.L., Yang, E.C. & Boo, S.M. (2006). Morphology and molecular phylogeny of Hypnea flexicaulis (Gigartinales, Rhodophyta) from Korea. Algae, 21: 417–423.
  • Griffin, N.J., Bolton, J.J. & Anderson, R.J. (1999). Porphyra aeodis sp. nov. (Bangiales, Rhodophyta), an epiphyte of Aeodes orbitosa from South Africa. European Journal of Phycology, 34: 505–512.
  • Guillemin, M., Contreras-Porcia, L. Ramírez, M.E., Macaya, E.C., Contador, C.B., Woods, H., Wyatt, C. & Brodie, J. (2016). The bladed Bangiales (Rhodophyta) of the South Eastern Pacific: molecular species delimitation reveals extensive diversity. Molecular Phylogenetics and Evolution, 94: 814–826.
  • Guiry, M.D. & Guiry, G.M. (2016). AlgaeBase. World-wide electronic publication, National University of Ireland, Galway. http://www.algaebase.org; searched on 25 May 2016.
  • Hanisak, M.D. (1998). Seaweed cultivation: global trends. World Aquaculture Magazine, 29: 18–21.
  • Harden, L.K., Morales, K.M. & Hughey, J.R. (2016). Identification of a new marine algal species Pyropia nitida sp. nov. (Bangiales: Rhodophyta) from Monterey, California. Mitochondrial DNA Part A: DNA Mapping, Sequencing, and Analysis, 4: 3058–3062.
  • Haroun, R.J., Gil-Rodriguez, M.C., Díaz De Castro J. & Prud’Homme van Reine, W.F. (2002). A checklist of the marine plants from Canary Islands (Central Eastern Atlantic Ocean). Botanica Marina, 45: 139–169.
  • Hebert, P.D.N., Cywinska, A., Ball, S.L. & deWaard, J.R. (2003). Biological identifications through DNA barcodes. Proceedings of the Royal Society B: Biological Sciences, 270: 313–322.
  • Humm, H. J. (1979). The Marine Algae of Virginia, Special Papers in Marine Science No. 3. University of Virginia, Charlottesville.
  • Istini, S., Zatnika, A. & Sujatmiko, W. (1998). The seaweed resources of Indonesia. In Seaweed Resources of the World (Critchley, A.T. & Ohno, M., editors), 92–98. Kanagawa International Fisheries Training Centre, Japan International Agency.
  • John, D.M., Prud’homme van Reine, W.F., Lawson, G.W., Kostermans, T.B. & Price, J.H. (2004). A taxonomic and geographical catalogue of the seaweeds of the western coast of Africa and adjacent islands. Beihefte zur Nova Hedwigia, 127: 1–339.
  • Johnson, M.S. & Black, R. (1982). Chaotic genetic patchiness in an inter-tidal limpet, Siphonaria sp. Marine Biology, 70: 157–164.
  • Jones, W.A., Griffin, N.J., Jones, D.T., Nelson, W.A., Farr, T.J. & Broom, J.E. (2004). Phylogenetic diversity in South African Porphyra (Bangiales, Rhodophyta) determined by nuclear SSU sequence analysis. European Journal of Phycology, 39: 197–211.
  • Kavale, M.G., Kazi, M.A. & Sreenadhan, N. (2015a). Pyropia acanthophora var. robusta (Bangiales, Rhodophyta) from Goa, India. Indian Journal of Geo-Marine Sciences, 44: 1–8.
  • Kavale, M.G., Kazi, M.A., Sreenadhan, N. & Singh, V.V. (2015b). Morphological, ecological and molecular characterization of Pyropia vietnamensis (Bangiales, Rhodophyta) from the Konkan region, India. Phytotaxa, 224: 45–58.
  • Kucera, H. & Saunders, G.W. (2012). A survey of Bangiales (Rhodophyta) based on multiple molecular markers reveals cryptic diversity. Journal of Phycology, 48: 869–882.
  • Kunimoto, M., Kito, H., Kaminishi, Y., Mizukami, Y. & Murase, N. (1999). Molecular divergence of the SSU rRNA gene and internal transcribed spacer 1 in Porphyra yezoensis (Rhodophyta). Journal of Applied Phycology, 11: 211–216.
  • Lee, Y. & Kang, S. (2001). A catalogue of the seaweeds in Korea. Cheju National University Press, Jeju, Korea.
  • Levring, T. (1953). The marine algae of Australia. I. Rhodophyta: Goniotrichales, Bangiales and Nemalionales. Arkiv för Botanik, Uppsala, 2: 457–530.
  • Lewmanomont, K. (1998). The seaweed resources of Thailand. In Seaweed Resources of the World (Critchley, A.T. & Ohno, M., editors), 70–78. Kanagawa International Fisheries Training Centre, Japan International Agency.
  • Liang, W.-D., Yang, Y.J., Tang, T.Y. & Chuang, W.-S. (2008). Kuroshio in the Luzon Strait. Journal of Geophysical Research-Oceans, 113: C08048, 1–19.
  • Librado, P. & Rozas, J. (2009). DnaSP v5: a software for comprehensive analysis of DNA polymorphism data. Bioinformatics, 25: 1451–1452.
  • Lindstrom, S.C. (2008). Cryptic diversity, biogeography and genetic variation in Northeast Pacific species of Porphyra sensu lato (Bangiales, Rhodophyta). Journal of Applied Phycology, 20: 951–962.
  • Lindstrom, S.C., Hughey, J.R. & Aguilar Rosas, L.E. (2015). Four new species of Pyropia (Bangiales, Rhodophyta) from the west coasts of North America: the Pyropia lanceolata species complex updated. PhytoKeys, 52: 1–22.
  • Lu, W., Yan, X.-H. & Jiang, Y. (2014). Winter bloom and associated upwelling northwest of the Luzon Island: a coupled physical-biological modeling approach. Journal of Geophysical Research-Oceans, 120: 533–546.
  • Martínez, E.A., Cárdenas, L. & Pinto, R. (2003). Recovery and genetic diversity of the intertidal kelp Lessonia nigrescens (Phaeophyceae) 20 years after El Niño 1982/83. Journal of Phycology, 39: 504–508
  • Masuda, M., Ohno, M. & Trono, G.C. Jr. (1991). A taxonomic assessment of Porphyra suborbiculata Kjellman, a food species from the Philippines. Japan Journal of Phycology, 39: 375–380.
  • Mateo-Cid, L.E., Mendoza-Gonzalez, A.C., Díaz-Larrea, J., Sentíes, A., Pedroche, P.F. & Sánchez Heredia, J.D. (2012). A new species of Pyropia (Rhodophyta, Bangiaceae), from the Pacific coast of Mexico, based on morphological and molecular evidence. Phytotaxa, 54: 1–12.
  • McIvor, L., Maggs, C.A., Provan, J. & Stanhope, M.J. (2001). rbcL sequences reveal multiple cryptic introductions of the Japanese red alga Polysiphonia harveyi. Molecular Ecology, 10: 911–919.
  • Milstein, D. & Oliveira, M.C. (2005). Molecular phylogeny of Bangiales (Rhodophyta) based on small subunit rDNA sequencing: emphasis on Brazilian Porphyra species. Phycologia, 44: 212–221.
  • Milstein, D., Medeiros, A., Oliveira, E.C. & Oliveira, M.C. (2012). Will a DNA barcoding approach be useful to identify Porphyra species (Bangiales, Rhodophyta)? A case study with Brazilian taxa. Journal of Applied Phycology, 24: 837–845.
  • Milstein, D., Madeiros, A.S., Oliveira, E.C. & Oliveira, M.C. (2015). Native or introduced? A re-evaluation of Pyropia species (Bangiales, Rhodophyta) from Brazil based on molecular analysis. European Journal of Phycology, 50: 37–45.
  • Mols-Mortensen A., Neefus, C.D., Nielsen, R., Gunnarsson K., Egilsdóttir, Pedersen P.M. & Brodie J. (2012). New insights into the biodiversity and genetic relationships of foliose Bangiales (Rhodophyta) in Iceland and the Faroe Islands. European Journal of Phycology, 47: 146–159.
  • Mols-Mortensen A., Neefus, C.D., Pedersen P.M. & Brodie, J. (2014). Diversity and distribution of foliose Bangiales (Rhodophyta) in West Greenland: a link between North Atlantic and North Pacific. European Journal of Phycology, 49: 1–10.
  • Mumford, T.F. Jr. & Miura, A. (1998). Porphyra as food: cultivation and economics. In Algae and Human Affairs (Lembi, C.A. & Waaland, J.R., editors), 87–117. Cambridge University Press, Cambridge.
  • Muths, D., Jollivet, D., Gentil, F. & Davoult, D. (2009). Large-scale genetic patchiness among NE Atlantic populations of the brittle star Ophiothrix fragilis. Aquatic Biology, 5: 117–132.
  • Neefus, C.D., Mathieson, A.C., Bray, T.L. & Yarish, C. (2008). The distribution, morphology, and ecology of three introduced Asiatic Porphyra (Bangiales, Rhodophyta) in the northwestern Atlantic. Journal of Phycology, 44: 1399–1414.
  • Nelson, W.A. & Broom, J.E.S. (2010). The identity of Porphyra columbina (Bangiales, Rhodophyta) originally described from the New Zealand subantarctic islands. Australian Systematic Botany, 23: 16–26.
  • Nelson, W.A. & D’Archino, R. (2014). Three new macroalgae from the Three Kings Islands New Zealand including the first southern Pacific Ocean record of the Furcellariaceae (Rhodophyta). Phycologia, 53: 602–613.
  • Nelson, W.A., Sutherland, J.E., Hwang, M.S. & Choi, H.-G. (2014). New distributional record for Pyropia koreana: confirmed to occur on the South Island, New Zealand. Algae, 29: 177–181.
  • Ogawa, H. (2001). Porphyra in South Asian Waters. In Proceedings of the 11th JSPS Joint Seminar on Marine Science (Taira, M.A., Uematsu, M., Michida, Y. & Kaneko, T., editors), 94–101. Center for International Cooperation, Ocean Research Institute, University of Tokyo, Tokyo, Japan.
  • Oliveira Filho, E.C. de & Coll, J. (1975). The genus Porphyra C. Ag. (Rhodophyta, Bangiales) in the American south Atlantic I. Brazilian species. Botanica Marina, 18: 191–197.
  • Payo, D.A., Leliaert, F., Verbruggen, H., D’hondt, S. & Calumpong, H.P. (2013). Extensive cryptic species diversity and fine-scale endemism in the marine red alga Portieria in the Philippines. Proceedings of the Royal Society B, 280: 20122660.
  • Posada, D. (2008). jModelTest: phylogenetic model averaging. Molecular Biology and Evolution, 25: 1253–1256.
  • Quisumbing, E. (1951). Medicinal plants of the Philippines. Republic of the Philippines, Department of Agriculture and Natural Resources, Technical Bulletin, 16: 1–1234.
  • Ramírez, M.E., Contreras Porcia, L., Guillemin, M.-L., Brodie, J., Valdivia, C., Flores Molina, M.R., Núñez, A., Bulboa Contador, C. & Lovazzano, C. (2014). Pyropia orbicularis sp. nov. (Rhodophyta, Bangiaceae) based on a population previously known as Porphyra columbina from the central coast of Chile. Phytotaxa, 158: 133–153.
  • Rivera, R.A. (2014). Physicochemical properties and quality evaluation of Porphyra acanthophora in the Philippines. MSc. thesis. Pukyong National University.
  • Ronquist, F. & Huelsenbeck, J.P. (2003). MrBayes 3: Bayesian phylogenetic inference under mixed models. Bioinformatics, 19: 1572–1574.
  • Sánchez, N., Vergès, A., Peteiro, C., Sutherland, J. & Brodie, J. (2014). Diversity of bladed Bangiales (Rhodophyta) in western Mediterranean: recognition of the genus Themis and descriptions of T. ballesterosii sp. nov., T. iberica sp. nov., and Pyropia parva sp. nov. Journal of Phycology, 50: 908–929.
  • Saunders, G.W. (2005). Applying DNA barcoding to red macroalgae: a preliminary appraisal holds promise for future applications. Philosophical Transactions of the Royal Society London Biology, 360: 1879–1888.
  • Sherwood, A.R., Kurihara, A., Conklin, K.Y., Sauvage, T. & Presting, G.G. (2010). The Hawaiian Rhodophyta biodiversity survey (2006–2010): a summary of principal findings. BMC Plant Biology, 10: 258.
  • Soe-Htun, U. & Zaw Zaw Pe, U. (1986). Studies on the cultivation of conchocelis filaments in Porphyra crispata Kjellman. Burma Research Congress.
  • Sutherland, J.E., Lindstrom, S.C., Nelson, W.A., Brodie, J., Lynch, M.D.J., Hwang, M.S., Choi, H., Miyata, M., Kikuchi, N., Oliveira, M.C., Farr, T., Neefus, C., Mols-Mortensen, A., Milstein, D. & Müller, K.M. (2011). A new look at an ancient order: generic revision of the Bangiales (Rhodophyta). Journal of Phycology, 47: 1131–1151.
  • Tamura, K., Peterson. D., Peterson. N., Stecher, G., Nei. M. & Kumar. S. (2011). MEGA.5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution, 28: 2731–2739.
  • Tan, J., Lim, P.-E., Phang, S.-M., Hong, D.D., Sunarpi, H. & Hurtado, A.Q. (2012). Assessment of four molecular markers as potential DNA barcodes for red algae Kappaphycus Doty and Eucheuma J. Agardh (Solieriaceae, Rhodophyta). PLoS ONE, 7: e52905.
  • Tanaka, T. & Pham-Hoàng, H. (1962). Notes on some marine algae from Viet-Nam-I. Memoirs of the Faculty of Fisheries, Kagoshima University, 11: 24–40.
  • Teasdale, B., West, A., Taylor, H. & Klein, A. (2002). A simple restriction fragment length polymorphism (RFLP) assay to discriminate common Porphyra (Bangiophyceae, Rhodophyta) taxa from Northwest Atlantic. Journal of Applied Phycology, 14: 293–298.
  • Thiers, B. (2016). Index Herbariorum: A global directory of public herbaria and associated staff. New York Botanical Garden’s Virtual Herbarium. http://sweetgum.nybg.org/science/ih/.
  • Thompson, J.D., Higgins, D.J. & Gibson, T.J. (1994). CLUSTALW: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position specific gap penalties and weight matrix choice. Nucleic Acids Research, 22: 4673–4680.
  • Torrano-Silva, B.N., Amancio, C.E. & Oliviera, E.C. (2010). Exotic marine macroalgae on Brazilian coast: a revision. Oecologia Australis, 14: 403–414.
  • Trono, G.C. Jr. & Ganzon-Fortes, E.T. (1988). Philippine Seaweeds. National Book Store, Manila.
  • Turner, H., Hovenkamp, P. & van Welzen, P.C. (2001). Biogeography of Southeast Asia and the West Pacific. Journal of Biogeography, 28: 217–230.
  • Vergés, A., Sánchez, N., Peteiro, C., Polo, L. & Brodie, J. (2013a). Pyropia suborbiculata (Bangiales, Rhodophyta): first records from the northeastern Atlantic and Mediterranean of this North Pacific species. Phycologia, 52: 121–129.
  • Vergés, A., Comalada, N., Sánchez, N. & Brodie, J. (2013b). A reassessment of the foliose Bangiales (Rhodophyta) in the Balearic Islands including the proposed synonymy of Pyropia olivii with Pyropia koreana. Botanica Marina, 56: 229–240.
  • Verlaque, M. (2001). Checklist of macroalgae of Thau Lagoon (Hérault, France), a hot spot of marine species introduction in Europe. Oceanologica Acta, 24: 291–249.
  • Wang, G., Wang, D. & Zhou, T. (2012). Upper layer circulation in the Luzon Strait. Aquatic Ecosystem Health and Management, 15: 39–45.
  • Watson, K., Cheney, D. & Levine, I. (1998). Can the aquacultured non-indigenous red alga Porphyra yezoensis recruit in Eastport, Maine? Journal of Phycology, 34 ( Suppl.): 62.
  • Watson, K., Levine, I. & Cheney, D. (1999). Biomonitoring of an aquacultured introduced seaweed, Porphyra yezoensis (Rhodophyta, Bangiophycidae) in Cobscook Bay, Maine, USA. In Marine Invasions (Pederson, J., editor), 260–264. Proceedings of the First National Conference, January 24–27, 1999, Massachusetts Institute of Technology Sea Grant College Program, Cambridge, MA.
  • West, A.L., Mathieson, A.C., Klein, A.S., Neefus, C.D. & Bray, T.L. (2005). Molecular ecological studies of New England species of Porphyra (Rhodophyta, Bangiales). Beihefte zur Nova Hedwigia, 80: 1–24.
  • Wynne, M.J. (2005). A check-list of benthic marine algae of the tropical and subtropical western Atlantic: second revision. Beihefte zur Nova Hedwigia, 129: 1–152.
  • Xie, Z., Lin, S., Liu, L., Ang, P.O. Jr & Shyu, J. (2015). Genetic diversity and taxonomy of foliose Bangiales (Rhodophyta) from Taiwan based on rbcL and cox1 sequences. Botanica Marina, 58: 189–2012.
  • Yang, E.C., Kim, M.S., Geraldino, P.J., Sahoo, D., Shin, J.-A. & Boo, S.M. (2008). Mitochondrial cox1 and rbcL genes of Gracilaria vermiculophylla (Gracilariaceae, Rhodophyta). Journal of Applied Phycology, 20: 161–168.
  • Yarish, C.R., Wilkes, R., Chopin, T., Fei, X.G., Mathieson, A.C., Klein, A.S., Neefus, C.D., Mitman, G.G. & Levine, I. (1998). Domestication of indigenous Porphyra (nori) species for commercial cultivation in Northeastern America. World Aquaculture, 29: 26–29.
  • Yoshida, T. (1997). Japanese marine algae: new combinations, new names and new species. Phycological Research, 45: 163–167.
  • Yoshida, T. (1998). Marine Algae of Japan. Uchida Rokakuho Publishing Co. Ltd, Tokyo.
  • Yoshida, T., Nakajima, Y. & Nakata, Y. (1990). Check-list of marine algae of Japan (revised in 1990). Japanese Journal of Phycology, 38: 269–320.

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