Auxosporulation in Chaetoceros acadianus sp. nov. (Bacillariophyceae), a new member of the Section Compressa

References

• Altschul, S.F., Gish, W., Miller, M., Myers, E.W. & Lipman, D.J. (1990). Basic local alignment search tool. Journal of Molecular Biology, 215: 403–410.
   PubMed Web of Science ®Google Scholar
• Andersen, R.A. (2005). Algal Culturing Techniques. Elsevier Academic Press, San Diego.
   Google Scholar
• Assmy, P., Hernández-Becerril, D.U. & Montresor, M. (2008). Morphological variability and life cycle traits of the type species of the diatom genus Chaetoceros, C. dichaeta. Journal of Phycology, 44: 152–163.
   PubMed Web of Science ®Google Scholar
• Balzano, S., Percopo, I., Siano, R., Gourvil, P., Chanoine, M., Marie, D., Vaulot, D. & Sarno, D. (2017). Morphological and genetic diversity of Beaufort Sea diatoms with high contributions from the Chaetoceros neogracilis species complex. Journal of Phycology, 53: 161–187.
   PubMed Web of Science ®Google Scholar
• Benson, D.A., Cavanaugh, M., Clark, K., Karsch-Mizrachi, I., Lipman, D.J., Ostell, J. & Sayers, E.W. (2013). GenBank. Nucleic Acids Research, 41: D36–D42.
   PubMed Web of Science ®Google Scholar
• Brunel, J. (1972). Orientation of setae in the genus Chaetoceros, in regard to the apical axis. Journal of the Marine Biological Association of India, 14: 315–327.
   Google Scholar
• Chamnansinp, A., Moestrup, Ø. & Lundholm, N. (2015). Diversity in the marine diatom Chaetoceros (Bacillariophyceae) in Thai waters – revisiting Chaetoceros compressus and Chaetoceros contortus. Phycologia, 54: 161–175.
   Google Scholar
• Cleve-Euler, A. (1951). Die Diatomeen von Schweden und Finnland. Kungliga Svenska Vetenskapsakademiens Handlingar, Fjärde Serien, 2: 1–163.
   Google Scholar
• Cupp, E.E. (1943). Marine Plankton Diatoms of the West Coast of North America. University of California Press, Berkeley.
   Google Scholar
• Darriba, D., Taboada, G.L., Doallo, R. & Posada, D. (2012). jModeltest 2: more models, new heuristics and parallel computing. Nature Methods, 9: 772.
   PubMed Web of Science ®Google Scholar
• Davidovich, N.A., Davidovich, O.I., Podunay, Y.A., Gastineau, R., Kaczmarska, I., Poulíčková, A. & Witkowski, A. (2017). Ardissonea crystallina has a type of sexual reproduction that is unusual for centric diatoms. Scientific Reports, 7: 14670.
   PubMed Web of Science ®Google Scholar
• Drebes, G. (1972). The life history of the centric diatom Bacteriastrum hyalinum Lauder. Nova Hedwigia, 39: 95–110.
   Google Scholar
• Drebes, G. (1974). Marines Phytoplankton. Eine Auswahl der Helgoländer planktonalgen (Diatomeen, Peridineen). Thieme, Stuttgart.
   Google Scholar
• Drebes, G. (1977). Cell structure, cell division, and sexual reproduction of Attheya decora West (Bacillariophyceae, Biddulphiineae). Nova Hedwigia, 54: 167–178.
   Google Scholar
• Eddy, S.R. (1998). Profile hidden Markov models. Bioinformatics, 14: 755–763.
   PubMed Web of Science ®Google Scholar
• Edgar, R.C. (2004). MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Research, 32: 1792–1797.
   PubMed Web of Science ®Google Scholar
• Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution, 39: 1993–2002.
   Web of Science ®Google Scholar
• Felsenstein, J. (2004). Inferring Phylogenies. Sinauer Associates, Sunderland.
   Google Scholar
• French, F.W. III. & Hargraves, P.E. (1985). Spore formation in the life cycle of diatoms Chaetoceros diadema and Leptocylindrus danicus. Journal of Phycology, 21: 477–483.
   Web of Science ®Google Scholar
• Furnas, M.J. (1985). Diel synchronization of sperm formation in the diatom Chaetoceros curvisetum Cleve. Journal of Phycology, 21: 667–671.
   Web of Science ®Google Scholar
• Guindon, S., Dufayard, J.F., Lefort, V., Anisimova, M., Hordijk, W. & Gascuel, O. (2010). New algorithms and methods to estimate maximum-likelihood phylogenies: assessing the performance of PhyML 3.0. Systematic Biology, 59: 307–321.
   PubMed Web of Science ®Google Scholar
• Hall, T.A. (1999). BioEdit: a user-friendly biology sequence alignment editor and analysis program for Windows95/98/NT. Nucleic Acids Symposium Series, 41: 95–98.
   Google Scholar
• Hargraves, P.E. (1972). Studies on marine plankton diatoms. I. Chaetoceros diadema (Ehr.) Gran: life cycle, structural morphology, and regional distribution. Phycologia, 11: 247–257.
   Google Scholar
• Hernández-Becerril, D.U. & Flores Granados, C. (1998). Species of the diatom genus Chaetoceros (Bacillariophyceae) in the plankton from the southern Gulf of Mexico. Botanica Marina, 41: 505–520.
   Web of Science ®Google Scholar
• Hoppenrath, M., Elbrächter, M. & Drebes, G. (2009). Marine Phytoplankton: Selected Microphytoplankton Species from the North Sea Around Helgoland and Sylt. Schweizerbart Science Publishers, Stuttgart.
   Google Scholar
• Hustedt, F. (1962). Die Kieselalgen Deutschlands, Österreichs und der Schweiz unter Berücksichtigung der übrigen Länder Europas sowie der angrenzenden Meeresgebiete. Dr. L. Rabenhorst‘s Kryptogamen-Flora von Deutschlands, Österreichs und der Schweiz, 7: 217–920.
   Google Scholar
• Idei, M., Sato, S., Nagasato, C., Motomura, T., Toyoda, K., Nagumo, T. & Mann, D.G. (2015). Spermatogenesis and auxospore structure in the multipolar centric diatom Hydrosera. Journal of Phycology, 51: 144–158.
   PubMed Web of Science ®Google Scholar
• Iyengar, M.O. & Subrahmanyan, R. (1944). Reduction division and auxospore formation in Cyclotella meneghiniana Kütz. Journal of the Indian Botanical Society, 23: 125–149.
   Google Scholar
• Kaczmarska, I., Martin, J.L., LeGresley, M.M. & Ehrman, J.M. (2005). Diversity of the diatom genus Pseudo-nitzschia Peragallo in the Quoddy Region of the Bay of Fundy, Canada. Harmful Algae, 4: 1–19.
   Web of Science ®Google Scholar
• Kaczmarska, I., Poulíčková, A., Sato, S., Edlund, M.B., Idei, M., Watanabe, T. & Mann, D.G. (2013). Proposals for a terminology for diatom sexual reproduction, auxospores and resting stages. Diatom Research, 28: 263–294.
   Web of Science ®Google Scholar
• Keller, A., Schleicher, T., Schultz, J., Müller, T., Dandekar, T. & Wolf, M. (2009). 5.8S-28S rRNA interaction and HMM-based ITS2 annotation. Gene, 430: 50–57.
   PubMed Web of Science ®Google Scholar
• Kooistra, W.H.C.F., Sarno, D., Hernández-Becerril, D.U., Assmy, P., Prisco, C.D. & Montresor, M. (2010). Comparative molecular and morphological phylogenetic analyses of the taxa in the Chaetocerotaceae (Bacillariophyta). Phycologia, 49: 471–500.
   Web of Science ®Google Scholar
• LeBlanc, K. & Hutchins, D.A. (2005). New applications of a biogenic silica deposition fluorophore in the study of oceanic diatoms. Limnology and Oceanography: Methods, 3: 462–467.
   Web of Science ®Google Scholar
• Lefort, V., Longueville, J.E. & Gascuel, O. (2017). SMS: Smart Model Selection in PhyML. Molecular Biology and Evolution, 34: 2422–2424.
   PubMed Web of Science ®Google Scholar
• Li, Y., Zhu, S., Lundholm, N. & Lü, S. (2015). Morphology and molecular phylogeny of Chaetoceros dayaensis sp. nov. (Bacillariophyceae), characterized by two 90° rotations of the resting spore during maturation. Journal of Phycology, 51: 469–479.
   PubMed Web of Science ®Google Scholar
• Li, Y., Boonprakob, A., Gaonkar, C.C., Kooistra, W.H.C.F., Lange, C.B., Hernández-Becerril, D., Chen, Z., Moestrup, Ø. & Lundholm, N. (2017). Diversity in the globally distributed diatom genus Chaetoceros (Bacillariophyceae): three new species from warm-temperature waters. PLoS ONE, 12: e0168887.
   PubMed Web of Science ®Google Scholar
• MacGillivary, M.L. & Kaczmarska, I. (2011). Survey of the efficacy of a short fragment of the rbcL gene as a supplemental DNA barcode for diatoms. Journal of Eukaryotic Microbiology, 58: 529–536.
   PubMed Web of Science ®Google Scholar
• Mai, J.C. & Coleman, A.W. (1997). The internal transcribed spacer 2 exhibits a common secondary structure in green algae and flowering plants. Journal of Molecular Evolution, 44: 258–271.
   PubMed Web of Science ®Google Scholar
• Meunier, A. (1910). Microplancton des Mers de Barents et de Kara. Duc d’Orléans Campagne Arctique de 1907. Charles Bulens, Brussels.
   Google Scholar
• Mills, K.E. & Kaczmarska, I. (2006). Autogamic reproductive behavior and sex cell structure in Thalassiosira angulata (Bacillariophyta). Botanica Marina, 49: 417–430.
   Web of Science ®Google Scholar
• Moniz, M.B.J. & Kaczmarska, I. (2010). Barcoding of diatoms: nuclear encoded ITS revisited. Protist, 161: 7–34.
   PubMed Web of Science ®Google Scholar
• Posada, D. & Buckley, T.R. (2004). Model selection and model averaging in phylogenetics: advantages of Akaike information criterion and Bayesian approaches over likelihood ratio tests. Systematic Biology, 53: 793–808.
   PubMed Web of Science ®Google Scholar
• Rines, J.E.B. (1999). Morphology and taxonomy of Chaetoceros contortus, with preliminary observations on Chaetoceros compressus (subgenus Hyalochaete, section Compressa). Botanica Marina, 42: 539–551.
   Web of Science ®Google Scholar
• Rines, J.E.B. & Hargraves, P.E. (1988). The Chaetoceros Ehrenberg (Bacillariophyceae) flora of Narragansett Bay, Rhode Island, U.S.A. Bibliotheca Phycologica, 79: 1–196.
   Google Scholar
• Rines, J.E.B. & Hargraves, P.E. (1990). Morphology and taxonomy of Chaetoceros compressus Lauder var. hirtisetus var. nova, with preliminary consideration of closely related taxa. Diatom Research, 5: 113–127.
   Google Scholar
• Rines, J.E.B. & Theriot, E.C. (2003). Systematics of Chaetocerotaceae (Bacillariophyceae). I. A phylogenetic analysis of the family. Phycological Research, 51: 83–98.
   Google Scholar
• Ronquist, F., Teslenko, M., Mark, P.V., Ayres, D.L., Darling, A., Höhna, S., Larget, B., Liu, L., Suchard, M.A. & Huelsenbeck, J.P. (2012). MrBayes 3.2: efficient Bayesian inference and model choice across a large model space. Systematic Biology, 61: 539–542.
   PubMed Web of Science ®Google Scholar
• Roshchin, A.M. (1975). Osobiennosti ontogeneza morskich centritcheskich diatomowych wodoroslei w klonowych culturach. Nautchne Doklady Wyschei Shkoly, Biologitcheskie Nauki, 3: 47–51.
   Google Scholar
• Round, F.E., Crawford, R.M. & Mann, D.G. (1990). The Diatoms. Biology & Morphology of the Genera. Cambridge University Press, Cambridge.
   Google Scholar
• Samanta, B., Kinney, M.E., Heffell, Q., Ehrman, J.M. & Kaczmarska, I. (2017). Gametogenesis and auxospore development in the bipolar centric diatom Brockmanniella brockmannii (Family Cymatosiraceae). Protist, 168: 527–545.
   PubMed Web of Science ®Google Scholar
• Samanta, B., Heffell, Q., Ehrman, J.M. & Kaczmarska, I. (2018). Spermatogenesis in the bipolar centric diatom Plagiogrammopsis vanheurckii (Mediophyceae). Phycologia, 57: 354–359.
   Web of Science ®Google Scholar
• Schütt, F. (1895). Arten von Chaetoceros und Peragallia. Ein Beitrag zur Hochseeflora. Berichte der Deutschen Botanischen Gesellschaft, 13: 35–48.
   Google Scholar
• Seibel, P.N., Müller, T., Dandekar, T., Schultz, J. & Wolf, M. (2006). 4SALE – a tool for synchronous RNA sequence and secondary structure alignment and editing. BMC Bioinformatics, 7: 498.
   PubMed Web of Science ®Google Scholar
• Seibel, P.N., Müller, T., Dandekar, T. & Wolf, M. (2008). Synchronous visual analysis and editing of RNA sequence and secondary structure alignments using 4SALE. BMC Research Notes, 1: 91.
   PubMedGoogle Scholar
• von Stosch, H.A. (1967). Diatomeen. In Handbuch der Pflanzenphysiologie, vol. 18: Vegetative Fortpfllanzung, parthenogenese und Apogamie bei Algen (Ettl, H., Müller, D.G., Neumann, K., von Stosch, H.A. & Weber, W., editors), 657–681. Springer-Verlag, Berlin.
   Google Scholar
• von Stosch, H.A. (1982). On auxospore envelopes in diatoms. Bacillaria, 5: 127–156.
   Google Scholar
• von Stosch, H.A., Theil, G. & Kowallik, K. (1973). Entwicklungsgeschichtliche Untersuchungen an zentrischen Diatomeen V. Bau und Lebenszyklus von Chaetoceros didymum, mit Beobachtungen uber einige anderen Arten der Gattung. Helgoländer wissenschaflicher Meeresuntersuchungen, 25: 384–445.
   Google Scholar
• White, T.J., Bruns, T.D., Lee, S.B. & Taylor, J.W. (1990). Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In PCR Protocols: A Guide to Methods and Applications (Innis, M.A., Gelfand, D.H., Sninsky, J.J. & White, T.J., editors), 315–322. Academic Press, London.
   Google Scholar
• Wolf, M., Friedrich, J., Dandekar, T. & Müller, T. (2005). CBCAnalyzer: inferring phylogenies based on compensatory base changes in RNA secondary structures. In Silico Biology, 5: 291–294.
   PubMedGoogle Scholar
• Zuker, M. (2003). Mfold web server for nucleic acid folding and hybridization prediction. Nucleic Acids Research, 31: 3406–3415.
   PubMed Web of Science ®Google Scholar