990
Views
11
CrossRef citations to date
0
Altmetric
Articles

Hidden diversity in the oomycete genus Olpidiopsis is a potential hazard to red algal cultivation and conservation worldwide

ORCID Icon, ORCID Icon, , , , ORCID Icon, ORCID Icon & ORCID Icon show all
Pages 162-171 | Received 07 Feb 2019, Accepted 06 Aug 2019, Published online: 04 Nov 2019

References

  • Arasaki, S. (1947). Studies on the rot of Porphyra tenera by a Pythium. Bulletin of the Japanese Society of Scientific Fisheries, 13: 74–90.
  • Arasaki, S. (1960). A chytridean parasite on the Porphyra. Bulletin of the Japanese Society of Scientific Fisheries, 26: 543–548.
  • Badis, Y., Klochkova, T.A., Strittmatter, M., Garvetto, A., Murúa, P., Sanderson, J.C., Kim, G.H & Gachon, C.M.M. (2018). Novel species of the oomycete Olpidiopsis potentially threaten European red algal cultivation. Journal of Applied Phycology, 31: 1239–1250.
  • Beakes, G.W., Honda, D. & Thines, M. (2014). Systematics of the Straminipila: Labyrinthulomycota, Hyphochytriomycota, and Oomycota. In The Mycota: Systematics and Evolution (7A) (McLaughlin, D.J. & Spatafora, J.W., editors), 39–97. Springer, Heidelberg.
  • Brasier, C.M. (2008). The biosecurity threat to the UK and global environment from international trade in plants. Plant Pathology, 57: 792–808.
  • Brawley, S.H., Blouin, N.A., Ficko-Blean, E., Wheeler, G., Lohr, M., Goodson, H.V., Jenkins, J., Blaby-Haas, C.E., Helliwell, K., Chan, C.X., Marriage, T., Bhattacharya, D., Klein, A., Badis, Y., Brodie, J., Cao, Y., Collen, J., Dittami, S., Gachon, C., Green, B., Karpowicz, S., Kim, J., Lin, S., Michel, G., Mittag, M., Olson, B., Pangilinan, J., Peng, Y., Qiu, H., Riek, S.Z., Shu, S.Q., Singer, J., Smith, A., Sprecher, B., Wagner, V., Wang, W., Wang, Z., Yan, Z., Yarish, C., Zhuang, Y.Y., Zou, Y., Lindquist, E., Grimwood, J., Barry, K., Rokshar, D., Schumtz, J., Gantt, E., Stiller, J., Grossman, A. & Prochnik, S. (2017). Insights into the red algae and eukaryotic evolution from the genome of Porphyra umbilicalis (Bangiophyceae, Rhodophyta). Proceedings of the National Academy of Sciences USA, 114: E6361–E6370.
  • Brown, M.V., van de Kamp, J., Ostrowski, M., Seymour, J.R., Ingleton, T., Messer, L.F., Jeffries, T., Siboni, N., Laverock, B., Bibiloni-Isaksson, J., Nelson, T.M., Coman, F., Davies, C.H., Frampton, D., Rayner, M., Goosen, K., Robert, S., Holmes, B., Abell, G.C.J., Craw, P., Kahlke, T., Sow, S.L.S., McAllister, K., Windsor, J., Skuza, M., Crossing, R., Patten, N., Malthouse, P., Van Ruth, P.D., Paulsen, I., Fuhrman, J.A., Richardson, A., Koval, J., Bissett, A., Fitzgerald, A., Moltmann, T. & Bodrossy, L. (2018). Systematic, continental scale temporal monitoring of marine pelagic microbiota by the Australian Marine Microbial Biodiversity Initiative. Nature Scientific Data, 5: 180130.
  • Buaya, A.T., Ploch, S., Hanic, L., Nam, B., Nigrelli, L., Kraberg, A. & Thines, M. (2017). Phylogeny of Miracula helgolandica gen. et sp. nov. and Olpidiopsis drebesii sp. nov., two basal oomycete parasitoids of marine diatoms, with notes on the taxonomy of Ectrogella-like species. Mycological Progress, 16: 1041–1050.
  • Buaya, A.T., Ploch, S. & Thines, M. (2019a). Rediscovery and phylogenetic placement of Olpidiopsis gillii (de Wildeman) Friedmann, a holocarpic oomycete parasitoid of freshwater diatoms. Mycoscience, 60: 141–146.
  • Buaya, A.T., Ploch, S., Inaba, S. & Thines, M. (2019b). Holocarpic oomycete parasitoid of red algae are not Olpidiopsis. Fungal Systematics and Evolution, 4: 21–31.
  • Cottier-Cook, E.J., Nagabhatla, N., Badis, Y., Campbell, M., Chopin, T., Dai, W., Fang, J., He, P., Hewitt, C., Kim, G.H., Huo, Y., Jiang, Z., Kema, G., Li, X., Liu, F., Liu, H., Liu, Y., Lu, Q., Luo, Q., Mao, Y., Msuya, F.E., Rebours, C., Shen, H., Stentiford, G.D., Yarish, C., Wu, H., Yang, X., Zhang, J., Zhou, Y. & Gachon, C.M.M. (2016). Safeguarding the future of the global seaweed aquaculture industry. United Nations University (INWEH) and Scottish Association for Marine Science Policy Brief. ISBN 978-92-808-6080-1.
  • Craigie, J.S. & Shacklock, P.F. (1995). Culture of Irish moss. In Cold-water Aquaculture in Atlantic Canada (Boghen, A.D., editor), 243–270. University of Moncton, Moncton.
  • Craigie, J.S. & Correa, J.A. (1996). Etiology of infectious diseases in cultivated Chondrus crispus (Gigartinales, Rhodophyta). Hydrobiologia, 326: 97–104.
  • de Vargas, C., Audic, S., Henry, N., Decelle, J., Mahé, F., Logares, R., Lara, E., Berney, C., Le Bescot, N., Probert, I., Carmichael, M., Poulain, J., Romac, S., Colin, S., Aury, J.-M., Bittner, L., Chaffron, S., Dunthorn, M., Engelen, S., Flegontova, O., Guidi, L., Horák, A., Jaillon, O., Lima-Mendez, G., Lukeš, J., Malviya, S., Morard, R., Mulot, M., Scalco, E., Siano, R., Vincent, F., Zingone, A., Dimier, C., Picheral, M., Searson, S., Kandels-Lewis, S., Acinas, S.G., Bork, P., Bowler, C., Gorsky, G., Grimsley, N., Hingamp, P., Iudicone, D., Not, F., Ogata, H., Pesant, S., Raes, J., Sieracki, M.E., Speich, S., Stemmann, L., Sunagawa, S., Weissenbach, J., Wincker, P. & Karsenti, E. (2015). Eukaryotic plankton diversity in the sunlit ocean. Science, 348: 1261605.
  • Dick, M.W. (2001). Straminipilous fungi: systematics of the peronosporomycetes, including accounts of the marine straminipilous protists, the plasmodiophorids, and similar organisms. Kluwer Academic Publishers, Dordrecht.
  • Ding, H. & Ma, J. (2005). Simultaneous infection by red rot and chytrid diseases in Porphyra yezoensis Ueda. Journal of Applied Phycology, 17: 51–56.
  • Edgar, R.C. (2010). Search and clustering orders of magnitude faster than BLAST. Bioinformatics, 26: 2460–1.
  • Ferdouse, F., Yang, Z., Holdt, S.L., Murúa, P. & Smith, R. (2018). FAO 2018. The global status of seaweed production, trade and utilization. FAO Globefish Research Program, 124: 1–100.
  • Fletcher, K., Uljevic, A., Tsirigoti, A., Antolic, B., Katsaros, C., Nikolic, V., van West, P. & Kuepper, F.C. (2015). New record and phylogenetic affinities of the oomycete Olpidiopsis feldmanni infecting Asparagopsis sp. (Rhodophyta). Diseases of Aquatic Organisms, 117: 45–57.
  • Gachon, C.M.M., Strittmatter, M., Badis, Y., Fletcher, K.I., Van West, P. & Müller, D.G. (2017). Pathogens of brown algae: culture studies of Anisolpidium ectocarpii and A. rosenvingei reveal that the Anisolpidiales are uniflagellated oomycetes. European Journal of Phycology, 52: 133–148.
  • Garvetto, A., Nézan, E., Badis, Y., Bilien, G., Arce, P., Bresnan, E., Gachon, C.M.M. & Siano, R. (2018). Novel widespread marine oomycetes parasitising diatoms, including the toxic genus pseudo-nitzschia: genetic, morphological, and ecological characterisation. Frontiers in Microbiology, 9: 2918.
  • Garvetto, A., Perrineau, M.M., Dressler-Allame, M., Bresnan, E. & Gachon, C.M.M. (2019). “Ectrogella” parasitoids of the diatom Licmophora sp. are polyphyletic. Journal of Eukaryotic Microbiology, doi:10.1111/jeu.12750.
  • Hasset, B.T., Thines, M., Buaya, A., Ploch, S. & Gradinger, R. (2019). A glimpse into the biogeography, seasonality, and ecological functions of arctic marine Oomycota. IMA Fungus, 10: 6.
  • Hayashi, L., Hurtado, A.Q., Msuya, F.E., Bleicher-Lhonneur, G. & Critchley, A.T. (2010). A review of Kappaphycus farming: prospects and constraints. In Seaweeds and their Role in Globally Changing Environments (Seckbach, J., Einav, R. & Israel, A., editors). Springer Netherlands, Dordrecht.
  • Jones, D.R. & Baker, R.H.A. (2007). Introductions of non-native plant pathogens into Great Britain, 1970–2004. Plant Pathology, 56: 891–910.
  • Jung, T., Orlikowski, L., Henricot, B., Abad-Campos, P., Aday, A.G., Aguín Casal, O. & Perez-Sierra, A. (2016). Widespread Phytophthora infestations in European nurseries put forest, semi-natural and horticultural ecosystems at high risk of Phytophthora diseases. Forest Pathology, 46: 134–163.
  • Kim, G.H., Moon, K.-H., Kim, J.-Y., Shim, J. & Klochkova, T.A. (2014). A revaluation of algal diseases in Korean Pyropia (Porphyra) sea farms and their economic impact. ALGAE, 29: 249–265.
  • Kim, G.H., Klochkova, T.A., Lee, D.J. & Im, S.H. (2016). Chloroplast virus causes green-spot disease in cultivated Pyropia of Korea. Algal Research, 17: 293–299.
  • Klochkova, T.A., Shin, Y.J., Moon, K.-H., Motomura, T. & Kim, G.H. (2016). New species of unicellular obligate parasite, Olpidiopsis pyropiae sp. nov., that plagues Pyropia sea farms in Korea. Journal of Applied Phycology, 28: 73–83.
  • Klochkova, T.A., Kwak, M.S. & Kim, G.H. (2017). A new endoparasite Olpidiopsis heterosiphoniae sp. nov. that infects red algae in Korea. Algal Research, 28: 264–269.
  • Kopf, A. et al. (2015). The ocean sampling day consortium. GigaScience, 4: 27.
  • Kumar, S., Stecher, G. & Tamura, K. (2016). MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for bigger datasets. Molecular Biology and Evolution, 33: 1870–4.
  • Kwak, M.S., Klochkova, T.A., Jeong, S. & Kim, G.H. (2017). Olpidiopsis porphyrae var. koreanae, an endemic endoparasite infecting cultivated Pyropia yezoensis in Korea. Journal of Applied Phycology, 29: 2003–2012.
  • Lafferty, K.D., Harvell, C.D., Conrad, J.M., Friedman, C.S., Kent, M.L., Kuris, A.M., Powell, E.N., Rondeau, D. & Saksida, S.M (2015). Infectious diseases affect marine fisheries and aquaculture economics. Annual Review of Marine Science, 7: 471–496.
  • Leinonen, R., Sugawara, H. & Shumway, M. (2011). The sequence read archive. Nucleic Acids Research, 39: D19–21.
  • Loureiro, R., Gachon, C.M. & Rebours, C. (2015). Seaweed cultivation: potential and challenges of crop domestication at an unprecedented pace. The New Phytologist, 206: 489–92.
  • Madhun, A.S., Karlsbakk, E., Isachsen, C.H., Omdal, L.M., Eide Sørvik, A.G., Skaala, Ø., Barlaup, B.T. & Glover, K.A. (2015). Potential disease interaction reinforced: double-virus-infected escaped farmed Atlantic salmon, Salmo salar L., recaptured in a nearby river. Journal of Fish Diseases, 38: 209–219.
  • Mo, Z., Li, S., Kong, F., Tang, X. & Mao, Y. (2016). Characterization of a novel fungal disease that infects the gametophyte of Pyropia yezoensis (Bangiales, Rhodophyta). Journal of Applied Phycology, 28: 395–404.
  • Park, C.S., Kakinuma, M. & Amano, H. (2001). Detection and quantitative analysis of zoospores of Pythium porphyrae, causative organism of red rot disease in Porphyra, by competitive PCR. Journal of Applied Phycology, 13: 433–441.
  • Park, C.S., Kakinuma, M., Sakaguchi, K. & Amano, H. (2003). Genetic variation detected with random amplified polymorphic DNA markers among isolates of the red rot disease fungus Pythium porphyrae isolated from Porphyra yezoensis from Korea and Japan. Fisheries Science, 69: 361–368.
  • Sekimoto, S., Yokoo, K., Kawamura, Y. & Honda, D. (2008). Taxonomy, molecular phylogeny, and ultrastructural morphology of Olpidiopsis porphyrae sp. nov. (Oomycetes, Stramenipiles), a unicellular obligate endoparasite of Bangia and Porphyra spp. (Bangiales, Rhodophyta). Mycological Research, 112: 361–374.
  • Sekimoto, S., Klochkova, T.A., West, J.A., Beakes, G.W. & Honda, D. (2009). Olpidiopsis bostrychiae sp. nov.: an endoparasitic oomycete that infects Bostrychia and other red algae (Rhodophyta). Phycologia, 48: 460–472.
  • Small, H.J. & Pagenkopp, K.M. (2011). Reservoirs and alternate hosts for pathogens of commercially important crustaceans: a review. Journal of Invertebrate Pathology, 106: 153–64.
  • Sparrow, F.K. (1960). Aquatic Phycomycetes. University of Michigan Press, Ann Arbor.
  • Stentiford, G.D. & Lightner, D.V. (2011). Cases of White Spot Disease (WSD) in European shrimp farms. Aquaculture, 319: 302–306.
  • Stentiford, G.D., Sritunyalucksana, K., Flegel, T.W., Williams, B.A.P., Withyachumnarnkul, B., Itsathitphaisarn, O. & Bass, D. (2017). New paradigms to help solve the global aquaculture disease crisis. PLoS Pathogens, 13: e1006160.
  • Stoeck, T., Bass, D., Nebel, M., Christen, R., Jones, M.D.M., Breiner. H.-W. & Richards, T.A. (2010). Multiple marker parallel tag environmental DNA sequencing reveals a highly complex eukaryotic community in marine anoxic water. Molecular Ecology, 19 (Suppl. 1): 21–31.
  • Strittmatter, M., Gachon, C.M.M., Muller, D.G., Kleinteich, J., Heesch, S., Tsirigoti, A., Katsaros, C., Kostopoulou, M. & Kupper, F.C. (2013). Intracellular eukaryotic pathogens in brown macroalgae in the Eastern Mediterranean, including LSU rRNA data for the oomycete Eurychasma dicksonii. Diseases of Aquatic Organisms, 104: 1–11.
  • Tremblay, J., Singh, K., Fern, A., Kirton, E., He, S., Woyke, T., Lee, J., Chen, F., Dangl, J.L. & Tringe, S.G. (2015). Primer and platform effects on 16S rRNA tag sequencing. Frontiers in Microbiology, 6: 711.
  • Vairappan, C.S. (2006). Seasonal occurrences of epiphytic algae on the commercially cultivated red alga Kappaphycus alvarezii (Solieriaceae, Gigartinales, Rhodophyta). Journal of Applied Phycology, 18: 611–617.
  • Valero, M., Guillemin, M.-L., Destombe, C., Jacquemin, B., Gachon, C.M.M., Badis, Y., Buschmann, A.H., Camus, C. & Faugeron, S. (2017). Perspectives on domestication research for sustainable seaweed aquaculture. Perspectives in Phycology, 4: 33–46.
  • Van der Meer, J.P. & Pueschel, C.M. (1985). Petersenia palmariae n. sp. (Oomycetes): a pathogenic parasite of the red alga Palmaria mollis (Rhodophyceae). Canadian Journal of Botany, 63: 404–408.
  • West, J.A., Klochkova, T.A., Kim, G.H. & Loiseaux-de Goër, S. (2006). Olpidiopsis sp., an oomycete from Madagascar that infects Bostrychia and other red algae: host species susceptibility. Phycological Research, 54: 72–85.

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.