References
- Arasaki, S. (1953). On Eisenia bicyclis Setchell. Bulletin of Japanese Society of Phycology, 1: 49–53. (In Japanese)
- Arasaki, S. (1964). How to know the seaweeds of Japan and its vicinity fully illustrated in colours. Hokuryukan, Tokyo. 217 pp. (In Japanese)
- Areschoug, J.E. (1876). De tribus Laminarieis (Egregia Aresch., Eisenia Aresch., Nereocystis) et de Stephanocystide osmundacea (Turn.). Trevis. observationes praecursorias offert. Botaniska Notiser, 1876: 65–73.
- Camacho, C., Coulouris, G., Avagyan, V., Ma, N., Papadopoulos, J., Bealer, K. & Madden, T. (2009). BLAST+: architecture and applications. BMC Bioinformatics, 10: 421.
- Chen, J., Zang, Y., Shang, S. & Tang, X. (2019). The complete mitochondrial genome of the brown alga Macrocystis integrifolia (Laminariales, Phaeophyceae). Mitochondrial DNA Part B, 4: 635–636.
- Cock, J.M., Sterck, L., Rouzé, P., Scornet, D., Allen, A.E., Amoutzias, G., … & Beszteri, B. (2010). The Ectocarpus genome and the independent evolution of multicellularity in brown algae. Nature, 465: 617–621.
- Hanyuda, T., Suzawa, Y., Suzawa, T., Arai, S., Sato, H., Ueda, K. & Kumano, S. (2004). Biogeography and taxonomy of Batrachospermum helminthosum Bory (Batrachospermales, Rhodophyta) in Japan inferred from rbcL gene sequences. Journal of Phycology, 40: 581–588.
- Hornemann, J.W. (1828). Om Fucus buccinalis Linnaei. Kongelige Danske Videnskabernes Selskabs Naturvidenskabelige og Mathematiske Afhandlinger, 3: 379–390, 1 folded plate.
- Jackman, S.D., Vandervalk, B.P., Mohamadi, H., Chu, J., Yeo, S., Hammond, S.A., Jahesh, G., Khan, H., Coombe, L., Warren, R.L. & Birol, I. (2017). ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter. Genome Research, 27: 768–777.
- Katoh, K. & Toh, H. (2008). Recent developments in the MAFFT multiple sequence alignment program. Briefings in Bioinformatics, 9: 286–298.
- Kawai, H., Hanyuda, T., Draisma, S.G.A. & Müller, D.G. (2007). Molecular phylogeny of Discosporangium mesarthrocarpum (Phaeophyceae) with a reassessment of the Discosporangiales. Journal of Phycology, 43: 186–194.
- Kawai, H., Kogishi, K., Hanyuda, T. & Kitayama, T. (2012). Taxonomic revision of the genus Cutleria proposing a new genus Mutimo to accommodate M. cylindrica (Cutleriaceae, Phaeophyceae). Phycological Research, 60: 241–248.
- Kawai, H., Hanyuda, T., Ridgway, L.M. & Holser, K. (2013). Ancestral reproductive structure in basal kelp Aureophycus aleuticus. Scientific Reports, 3: 2491.
- Kawai, H., Hanyuda, T., Yamagishi, T. & Kai, A. (2015). Reproductive morphology and DNA sequences of the brown alga Platysiphon verticillatus support the new combination Platysiphon glacialis. Journal of Phycology, 51: 910–917.
- Kawai, H., Hanyuda, T., Shibata, K., Kamiya, M. & Peters, A.F. (2019). Proposal of a new brown algal species, Mesogloia japonica sp. nov. (Chordariaceae, Phaeophyceae), and transfer of Sauvageaugloia ikomae to Mesogloia. Phycologia, 58: 63–69.
- Kojima, R., Hanyuda, T. & Kawai, H. (2015). Taxonomic re-examination of Japanese Halimeda species using genetic markers, and proposal of a new species Halimeda ryukyuensis (Bryopsidales, Chlorophyta). Phycological Research, 63: 178–188.
- Kumar, S., Stecher, G., Li, M., Knyaz, C. & Tamura, K. (2018). MEGA X: Molecular evolutionary genetics analysis across computing platforms. Molecular Biology and Evolution, 35: 1547–1549.
- Lane, C.E., Lindstrom, S.C. & Saunders, G.W. (2007). A molecular assessment of northeast Pacific Alaria species (Laminariales, Phaeophyceae) with reference to the utility of DNA barcoding. Molecular Phylogenetics and Evolution, 44: 634–648.
- Le Corguillé, G., Pearson, G., Valente, M., Viegas, C., Gschloessl, B., Corre, E., Bailly, X., Peters, A.F., Jubin, C., Vacherie, B. & Cock, J.M. (2009). Plastid genomes of two brown algae, Ectocarpus siliculosus and Fucus vesiculosus: further insights on the evolution of red-algal derived plastids. BMC Evolutionary Biology, 9: 253–266.
- Lis, J.T. (1980). Fractionation of DNA fragments by polyethylene glycol induced precipitation. Methods in Enzymology, 65: 347–353.
- Ni-Ni-Win, Hanyuda, T., Arai, S., Uchimura, M., Abbott, I.A. & Kawai, H. (2008). New records of Padina species from the western coast of the Pacific Ocean. Phycological Research, 56: 288–300.
- Rambaut, A. & Drummond, A.J. (2018). Tracer v.1.7.1. [cited 11 October 2018]. Available from: http://tree.bio.ed.ac.uk/software/tracer/.
- Ronquist, F., Teslenko, M., van der Mark, P., Ayres, D.L., Darling, A., Hohna, S., Larget, B., Liu, L., Suchard, M.A. & Huelsenbeck, J.P. (2012). MrBayes 3.2: Efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology, 61: 539–542.
- Rothman, M.D., Mattio, L., Wernberg, T., Anderson, R.J., Uwai, S., Mohring, M.B. & Bolton, J.J. (2015). A molecular investigation of the genus Ecklonia (Phaeophyceae, Laminariales) with special focus on the southern hemisphere. Journal of Phycology, 51: 236–246.
- Setchell, W.A. (1896). Eisenia arborea Aresch. Erythea, 4: 129–133, 155–162.
- Setchell, W.A. (1905). Post-embryonal stages of the Laminariaceae. University of California Publications in Botany, 2: 115–138.
- Silberfeld, T., Leigh, J.W., Verbruggen, H., Cruaud, C., de Reviers, B. & Rousseau, F. (2010). A multi-locus time-calibrated phylogeny of the brown algae (Heterokonta, Ochrophyta, Phaeophyceae): investigating the evolutionary nature of the “brown algal crown radiation”. Molecular Phylogenetics and Evolution, 56: 659–674.
- Silva, P.C. (2008). Conspecificity of Eisenia desmarestioides and E. masonii (Laminariales, Phaeophyceae) from Isla Guadalupe, Baja California, Mexico. Hidrobiológica, 18: 155–159.
- Silvestro, D. & Michalak, I. (2012). raxmlGUI: a graphical front-end for RAxML. Organisms Diversity & Evolution, 12: 335–337.
- Starko, S., Gomez, M.S., Darby, H., Demes, K.W., Kawai, H., Yotsukura, N., Lindstrom, S.C., Keeling, P.J. & Graham, S.W. (2019). A comprehensive kelp phylogeny sheds light on the evolution of an ecosystem. Molecular Phylogenetics and Evolution, 136: 138–150.
- Tanabe, A.S. (2011). Kakusan4 and Aminosan: two programs for comparing nonpartitioned, proportional and separate models for combined molecular phylogenetic analyses of multilocus sequence data. Molecular Ecology Resources, 11: 914–921.
- Wang, X., Shao, Z., Fu, W., Yao, J., Hu, Q. & Duan, D. (2013). Chloroplast genome of one brown seaweed, Saccharina japonica (Laminariales, Phaeophyta): its structural features and phylogenetic analyses with other photosynthetic plastids. Marine Genomics, 10: 1–9.
- Yendo, K. (1902). On Eisenia and Ecklonia. Botanical Magazine, Tokyo, 16: 203–206.
- Yoon, H.S., Hackett, J.D. & Bhattacharya, D. (2002). A single origin of the peridinin- and fucoxanthin-containing plastids in dinoflagellates through tertiary endosymbiosis. Proceedings of the National Academy of Sciences USA, 99: 11724–11729.