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Research Article

Closely related dinoflagellate species in vastly different habitats – an example of a marine–freshwater transition

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Pages 478-489 | Received 30 Oct 2019, Published online: 18 May 2020

References

  • Alverson, A.J., Beszteri, B., Julius, M.L. & Theriot, E.C. (2011). The model marine diatom Thalassiosira pseudonana likely descended from a freshwater ancestor in the genus Cyclotella. BMC Evolutionary Biology, 11: 125.
  • Annenkova, N.V. (2013). Phylogenetic relations of the dinoflagellate Gymnodinium baicalense from Lake Baikal. Central European Journal of Biology, 8: 366–373.
  • Annenkova, N.V. (2018). Identification of Lake Baikal plankton dinoflagellates from the genera Gyrodinium and Gymnodinium using single-cell PCR. Russian Journal of Genetics, 54: 1302–1313.
  • Annenkova, N.V., Belykh, O.I., Denikina, N.N. & Belikov, S.I. (2009). Identification of dinoflagellates from the Lake Baikal on the basis of molecular genetic data. Doklady Biological Sciences, 426: 253–256.
  • Annenkova, N.V., Hansen, G., Moestrup, Ø. & Rengefors, K. (2015). Recent adaptive radiation in a marine and freshwater dinoflagellate species flock. ISME Journal, 9: 1821–1834.
  • Annenkova, N.V., Ahrén, D., Logares, R., Kremp, A. & Rengefors, K. (2018). Delineating closely related dinoflagellate lineages using phylotranscriptomics. Journal of Phycology, 54: 571–576.
  • Antipova, N.L. (1955). New species of the genera Gymnodinium Stein (Gymnodiniaceae) in the Lake Baikal. Proceedings of the Academy of Sciences of the USSR, 103: 325–328. (in Russian)
  • Antipova, N.L. (1974). Interannual changes in phytoplankton of Lake Baikal near Bolshii Koty, 1960–1970 years. In Baikal Productivity and Anthropogenic Changes of its Nature (Kozhova, O.M., editor), 75–94. ISU, Irkutsk. (in Russian)
  • Bondarenko, N.A. (2009). Ecology and taxonomy diversity of planktonic algae in mountain lakes from the Eastern Siberia. Dr. Sci. thesis, Institute for Biology of Inland Waters RAS, Borok, Russia. (in Russian)
  • Cabello-Yeves, P.J., Zemskaya, T.I., Rosselli, R., Coutinho, F.H., Zakharenko, A.S., Blinov, V.V. & Rodriguez-Valera, F. (2018). Genomes of novel microbial lineages assembled from the sub-ice waters of Lake Baikal. Applied and Environmental Microbiology, 84: e02132–17.
  • Coleman, A.W. (2009). Is there a molecular key to the level of “biological species” in eukaryotes? A DNA guide. Molecular Phylogenetics and Evolution, 50: 197–203.
  • Collins, S. & Bell, G. (2004). Phenotypic consequences of 1,000 generations of selection at elevated CO2 in a green alga. Nature, 431: 566–569.
  • Collins, S. & De Meaux, J. (2009). Adaptation to different rates of environmental change in Chlamydomonas. Evolution, 63: 2952–2965.
  • Daugbjerg, N., Hansen, G., Larsen, J. & Moestrup, Ø. (2000). Phylogeny of some of the major genera of dinoflagellates based on ultrastructure and partial LSU rDNA sequence data, including the erection of three new genera of unarmoured dinoflagellates. Phycologia, 39: 302–317.
  • Ellegaard, M. & Oshima, Y. (1998). Gymnodinium nolleri Ellegaard et Moestrup sp. ined. (Dinophyceae) from Danish waters, a new species producing Gymnodinium catenatum-like cysts: molecular and toxicological comparisons with Australian and Spanish strains of Gymnodinium catenatum. Phycologia, 37: 369–378.
  • Fulton, T.L. & Strobeck, C. (2010). Multiple fossil calibrations, nuclear loci and mitochondrial genomes provide new insight into biogeography and divergence timing for true seals (Phocidae, Pinnipedia). Journal of Biogeography, 37: 814–829.
  • Guillard, R.R.L. & Lorenzen, C.J. (1972). Yellow-green algae with chlorophyllide C. Journal of Phycology, 8: 10–14.
  • Hairston, Jr. N.G., Lampert, W., Cáceres, C.E., Holtmeier, C.L., Weider, L.J., Gaedke, U., Fischer, J.M., Fox, J.A. & Post, D.M. (1999). Lake ecosystems: rapid evolution revealed by dormant eggs. Nature, 401: 446.
  • Hall, T.A. (1999). BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Series, 41: 95–98.
  • Hansen, G., Daugbjerg, N. & Henriksen, P. (2000). Comparative study of Gymnodinium mikimotoi and Gymnodinium aureolum, comb. nov (= Gyrodinium aureolum) based on morphology, pigment composition, and molecular data. Journal of Phycology, 36: 394–410.
  • Hansen, G., Botes, L. & De Salas, M. (2007). Ultrastructure and large subunit rDNA sequences of Lepidodinium viride reveal a close relationship to Lepidodinium chlorophorum comb. nov. (= Gymnodinium chlorophorum). Phycological Research, 55: 25–41.
  • Katoh, S. & Standley, D.M. (2013). MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology and Evolution, 30: 772–780.
  • Khursevich, G.K., Karabanov, E.B., Prokopenko, A.A., Williams, D.F., Kuzmin, M.I., Fedenya, S.A., Gvozdkov, A.N. & Kerber, E.V. (2001). Detailed diatom biostratigraphy of Baikal sediment during the Brunhes Chron and climatic factors of species formation. Russian Geology and Geophysics, 42: 108–129. (in Russian)
  • Kirst, G.O. (1990). Salinity tolerance of eukaryotic marine algae. Annual Review of Plant Biology, 41: 21–53.
  • Kobanova, G.I. (2009). Morphology and life cycle of Gymnodinium baicalense Ant. (Dinophyceae) from Lake Baikal. Contemporary Problems of Ecology, 2: 581.
  • Kozhova, O.M. & Izmest’eva, L.R. (1998). Lake Baikal: Evolution and Biodiversity. Backhuys Publ., Leiden.
  • Kremp, A., Shull, D.H. & Anderson, D.M. (2003). Effects of deposit-feeder gut passage and fecal pellet encapsulation on germination of dinoflagellate resting cysts. Marine Ecology Progress Series, 263: 65–73.
  • Kretschmann, J., Filipowicz, N.H., Owsianny, P.M., Zinßmeister, C. & Gottschling, M. (2015). Taxonomic clarification of the unusual dinophyte Gymnodinium limneticum Wołosz. (Gymnodiniaceae) from the Tatra Mountains. Protist, 166: 621–637.
  • Logares, R., Shalchian-Tabrizi, K., Boltovskoy, A. & Rengefors, K. (2007). Extensive dinoflagellate phylogenies indicate infrequent marine-freshwater transitions. Molecular Phylogenetics and Evolution, 45: 887–903.
  • Logares, R., Daugbjerg, N., Boltovskoy, A., Kremp, A., Laybourn-Parry, J. & Rengefors, K. (2008). Recent evolutionary diversification of a protist lineage. Environmental Microbiology, 10: 1231–1243.
  • Logares, R., Bråte, J., Bertilsson, S., Clasen, J.L., Shalchian-Tabrizi, K. & Rengefors, K. (2009). Infrequent marine-freshwater transitions in the microbial world. Trends in Microbiology, 17: 414–22.
  • Lohbeck, K.T., Riebesell, U. & Reusch, T.B. (2012). Adaptive evolution of a key phytoplankton species to ocean acidification. Nature Geoscience, 5: 346.
  • Lohbeck, K.T., Riebesell, U., Collins, S. & Reusch, T.B. (2013). Functional genetic divergence in high CO2 adapted Emiliania huxleyi populations. Evolution, 67: 1892–1900.
  • López-Rodas, V., Marvá, F., Rouco, M., Costas, E. & Flores-Moya, A. (2008). Adaptation of the chlorophycean Dictyosphaerium chlorelloides to stressful acidic, mine metal-rich waters as result of pre-selective mutations. Chemosphere, 72: 703–707.
  • Luo, Z., Hu, Z., Tang, Y., Mertens, K.N., Leaw, C.P., Lim, P.T., Teng, S.T., Wang, L. & Gu, H.F. (2018). Morphology, ultrastructure, and molecular phylogeny of Wangodinium sinense gen. et sp. nov. (Gymnodiniales, Dinophyceae) and revisiting of Gymnodinium dorsalisulcum and Gymnodinium impudicum. Journal of Phycology, 54: 744–761.
  • Moestrup, Ø. & Calado, A.J. (2018). Süßwasserflora von Mitteleuropa, Bd. 6 – Freshwater Flora of Central Europe, Vol. 6: Dinophyceae. Springer-Verlag, Berlin.
  • Moestrup, Ø., Lindberg, K. & Daugbjerg, N. (2009). Studies on woloszynskioid dinoflagellates IV: the genus Biecheleria gen. nov. Phycological Research, 57: 203–220.
  • Moestrup, Ø., Hakanen, P., Hansen, G., Daugbjerg, N. & Ellegaard, M. (2014). On Levanderina fissa gen. and comb. nov. (Dinophyceae) (syn. Gymnodinium fissum, Gyrodinium instriatum, Gyr. uncatenum), a dinoflagellate with a very unusual sulcus. Phycologia, 53: 265–92.
  • Montresor, M., Lovejoy, C., Orsini, L., Procaccini, G. & Roy, S. (2003). Bipolar distribution of the cyst-forming dinoflagellate Polarella glacialis. Polar Biology, 26: 186–194.
  • Obolkina, L.A., Bondarenko, N.A., Doroshchenko, L.F., Gorbunova, L.A. & Molozhavaya, O.A. (2000). The find of a cryophilic association in Lake Baikal. Doklady Earth Sciences, 371: 592–594.
  • Parrow, M.W. & Kremp, A. (2008). Asexual resting cysts: a common dinoflagellate survival strategy? In Book of Abstracts Eighth International Conference on Modern and Fossil Dinoflagellates, 42–43.
  • Popovskaya, G.I. & Genkal, S.I. (2008). Materials to flora of diatom algae (Centrophyceae, Bacillariophyta) in some lakes of Pribaikal and Zabaikal regions. Inland Water Biology, 4: 3–11.
  • Rengefors, K., Laybourn‐Parry, J., Logares, R., Marshall, W.A. & Hansen, G. (2008). Marine‐derived dinoflagellates in antarctic saline lakes: community composition and annual dynamics. Journal of Phycology, 44: 592–604.
  • Rengefors, K., Kremp, A., Rheusch, T. & Wood, M. (2017). Genetic diversity and evolution of eukaryotic phytoplankton: revelations from population genetic studies. Journal of Plankton Research, 39: 165–179.
  • Sampedro, N., Fraga, S., Penna, A., Casaianca, S., Zapata, M., Grünewald, C.F., Riobó, P. & Camp, J. (2011). Barrufeta bravensis gen. nov. sp. nov. (Dinophyceae): a new bloom-forming species from the northwest Mediterranean Sea. Journal of Phycology, 47: 375–392.
  • Schlüter, L., Lohbeck, K.T., Gröger, J.P., Riebesell, U. & Reusch, T.B. (2016). Long-term dynamics of adaptive evolution in a globally important phytoplankton species to ocean acidification. Science Advances, 2: e1501660.
  • Simon, M., Jardillier, L., Deschamps, Ph., Moreira, D., Restoux, G., Bertolino, P. & López García, P. (2015). Complex communities of small protists and unexpected occurrence of typical marine lineages in shallow freshwater systems. Environmental Microbiology, 17: 3610–3627.
  • Spielhagen, R.F., Erlenkeuser, H. & Siegert, Ch. (2005). History of freshwater runoff across the Laptev Sea (Arctic) during the last deglaciation. Global and Planetary Change, 48: 187–207.
  • Stamatakis, A. (2014). RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies. Bioinformatics, 30: 1312–1313.
  • Sundström, A.M., Kremp, A., Daugbjerg, N., Moestrup, Ø., Ellegaard, M., Hansen, R. & Hajdu, S. (2009). Gymnodinium corollarium sp. nov. (Dinophyceae) – a new cold-water dinoflagellate responsible for cyst sedimentation events in the Baltic Sea. Journal of Phycology, 45: 938–952.
  • Takano, Y., Yamaguchi, H., Inouye, I., Moestrup, Ø. & Horiguchi, T. (2014). Phylogeny of five species of Nusuttodinium gen. nov. (Dinophyceae), a genus of unarmoured kleptoplastidic dinoflagellates. Protist, 165: 759–778.
  • Tang, Y.Z., Egerton, T.A., Kong, L.S. & Marshall, H.G. (2008). Morphological variation and phylogenetic analysis of the dinoflagellate Gymnodinium aureolum from a tributary of Chesapeake Bay. Journal of Eukaryotic Microbiology, 55: 91–99.
  • Tesson, S.V., Weißbach, A., Kremp, A., Lindström, Å. & Rengefors, K. (2018). The potential for dispersal of microalgal resting cysts by migratory birds. Journal of Phycology, 54: 518–528.
  • Wickham, H. (2016). ggplot2: elegant graphics for data analysis. Springer-Verlag, New York.
  • Wolf, M., Friedrich, J., Dandekar, T. & Müller, T. (2005). CBCAnalyzer: inferring phylogenies based on compensatory base changes in RNA secondary structures. In Silico Biology, 5: 291–294.
  • Žerdoner Čalasan, A., Kretschmann, J. & Gottschling, M. (2019). They are young and they are many: dating freshwater lineages in unicellular dinophytes. Environmental Microbiology, 21: 4125–4135.
  • Zhang, J., Kapli, P., Pavlidis, P. & Stamatakis, A.A. (2013). General species delimitation method with applications to phylogenetic placements. Bioinformatics, 29: 2869–2876.

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