Corallina (Corallinales, Rhodophyta) from Tristan da Cunha and the Falkland Islands: implications for South Atlantic biogeography

References

• Bouckaert, R., Vaughan, T.G., Barido-Sottani, J., Duchêne, S., Fourment, M., Gavryushkina, A., Heled, J., Jones, G., Kühnert, D., De Maio, N., Matschiner, M., Mendes, F. K., Müller, N.F., Ogilvie, H.A., du Plessis, L., Popinga, A., Rambaut, A., Rasmussen, D., Siveroni, I., Suchard, M.A., Wu, C.-H., Xie, D., Zhang, C., Stadler, T. & Drummond., A.J. (2019). BEAST 2.5: an advanced software platform for Bayesian evolutionary analysis. PLoS Computational Biology, 15: e1006650.
   PubMed Web of Science ®Google Scholar
• Brodie, J., Walker, R., Williamson, C. & Irvine, L.M. (2013). Epitypification and redescription of Corallina officinalis L., the type of the genus, and C. elongata Ellis & Solander (Corallinales, Rhodophyta). Cryptogamie, Algologie, 34: 49–56.
   Web of Science ®Google Scholar
• Broom, J., Hart, D.R., Farr, T.J., Nelson, W.A., Neill, K.F., Harvey, A.S. & Woelkerling, W.J. (2008). Utility of psbA and nSSU for phylogenetic reconstruction in the Corallinales based on New Zealand taxa. Molecular Phylogenetics and Evolution, 46: 958–973.
   PubMed Web of Science ®Google Scholar
• Bustamante, D.E., Calderon, M.S. & Hughey, J.R. (2019). Conspecificity of the Peruvian Corallina ferreyrae with C. caespitosa (Corallinaceae, Rhodophyta) inferred from genomic analysis of the type specimen. Mitochondrial DNA Part B Resources 4(1): 1285–1286.
   Web of Science ®Google Scholar
• Castresana, J. (2000). Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Molecular Biology and Evolution, 17: 540–552.
   PubMed Web of Science ®Google Scholar
• Chamberlain, Y.M. (1965). Marine Algae of Gough Island. Bulletin of the British Museum (Natural History) Botany series, 3: 175–232.
   Google Scholar
• Dawson, E.Y., Acleto, O.C. & Foldvik, N. (1964). The seaweeds of Peru. Beihefte zur Nova Hedwigia 13: 1–111, 81 pls.
   Google Scholar
• Donald, K.M., Kennedy, M. & Spencer, H.G. (2005). Cladogenesis as the result of long-distance rafting events in Pacific topshells (Gastropoda: Trochidae). Evolution, 59: 1701–1711.
   PubMed Web of Science ®Google Scholar
• Ezard, T., Fujisawa, T. & Barraclough, T. (2017). splits: SPecies’ Limits by Threshold Statistics. https://R-Forge.R-project.org/projects/splits/.
   Google Scholar
• Farr, T., Broom, J., Hart, D., Neill, K. & Nelson, W. (2009). Common Coralline Algae of Northern New Zealand. NIWA Information Series No. 70.
   Google Scholar
• Fraser, C.I., Winter, D.J., Spencer, G.H. & Waters, J.M. (2010). Multigene phylogeny of the southern bull-kelp genus Durvillaea (Phaeophyceae: Fucales). Molecular Phylogenetics and Ecology, 57: 1301–1311.
   PubMed Web of Science ®Google Scholar
• Fujisawa, T. & Barraclough, T.G. (2013). Delimiting species using single-locus data and the Generalized Mixed Yule Coalescent approach: a revised method and evaluation on simulated data sets. Systematic Biology, 62: 707–724.
   PubMed Web of Science ®Google Scholar
• Garbary, D.J. & Johansen, H.W. (1982). Scanning electron microscopy of Corallina and Haliptilon (Corallinaceae, Rhodophyta): surface features and their taxonomic implications. Journal of Phycology, 18: 211–219.
   Web of Science ®Google Scholar
• González-Wevar, C.A., Hüne, M., Cañete, J.I., Mansilla, A., Nakano, T. & Poulin, E. (2012). Towards a model of postglacial biogeography in shallow marine species along the Patagonian Province: lessons from the limpet Nacella magellanica (Gmelin, 1791). BMC Evolutionary Biology, 12: 139. doi: 10.1186/1471-2148-12-139.
   PubMedGoogle Scholar
• Guiry, M.D. & Guiry, G.M. (2020). AlgaeBase. World-wide electronic publication, National University of Ireland, Galway. https://www.algaebase.org; searched on 21 April 2020.
   Google Scholar
• Harvey, A., Woelkerling, W., Farr, T., Neill, K. & Nelson, W. (2005). Coralline Algae of Central New Zealand: An Identification Guide to Common Crustose Species. NIWA Information Series No. 57.
   Google Scholar
• Hernández-Carmona, G., Hughes, B. & Graham, M.H. (2006). Reproductive longevity of drifting kelp Macrocystis pyrifera (Phaeophyceae) in Monterey Bay, USA. Journal of Phycology, 42: 119–1207.
   Web of Science ®Google Scholar
• Hind, K.R. & Saunders, G.W. (2013). A molecular phylogenetic study of the tribe Corallineae (Corallinales, Rhodophyta) with an assessment of genus‐level taxonomic features and descriptions of novel genera. Journal of Phycology, 49: 103–114.
   PubMed Web of Science ®Google Scholar
• Irvine, L.M. & Johansen, H.W. (1994). Corallinoideae. In Seaweeds of the British Isles Volume 1 Rhodophyta. Part 2B Corallinales, Hildenbrandiales (Irvine, L.M. & Chamberlain, Y.M., editors), pp. 37–57. HMSO, London.
   Google Scholar
• Johansen, H.W. (1981). Coralline Algae, A First Synthesis. CRC Press, Boca Raton, FL.
   Google Scholar
• Katoh, K. & Standley, D.M. (2013). MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology and Evolution, 30: 772–780.
   PubMed Web of Science ®Google Scholar
• Kimura, M. (1980). A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. Journal of Molecular Evolution, 16: 111–120.
   PubMed Web of Science ®Google Scholar
• Kozlov, A.M., Darriba, D., Flouri, T., Morel, B. & Stamatakis, A. (2019). RAxML-NG: a fast, scalable and user-friendly tool for maximum likelihood phylogenetic inference. Bioinformatics, 35: 4453–4455.
   PubMed Web of Science ®Google Scholar
• Lanfear, R., Frandsen, P.B., Wright, A.M., Senfeld, T. & Calcott, B. (2016).
   Google Scholar
• Leese, F., Kop, A., Wägele, J. & Held, C. (2008). Cryptic speciation in a benthic isopod from Patagonian and Falkland Island waters and the impact of glaciations on its population structure. Frontiers in Zoology, 5: 19. doi:10.1186/1742-9994-5-19.
   PubMed Web of Science ®Google Scholar
• Macaya, E.C., Boltaña, S., Hinojosa, I.A., Macchiavello, J.E., Valdivia, N.A., Vásquez, N.R., Buschmann, A.H., Vásquez, J.A., Alonson Vega, J.M. & Thiel, M. (2005). Presence of sporophylls in floating kelp rafts of Macrocystis spp. (Phaeophyceae) along the Chilean Pacific coast. Journal of Phycology, 41: 913–922.
   Web of Science ®Google Scholar
• Magill, C.L., Maggs, C.A., Johnson, M.P. & O’Connor, N. (2019). Sustainable harvesting of the ecosystem engineer Corallina officinalis for biomaterials. Frontiers in Marine Science, https://doi.org/10.3389/fmars.2019.00285.
   Google Scholar
• Melbourne, L.A., Hernández-Kantún, J.J., Russell, S. & Brodie, J. (2017). There is more to maerl than meets the eye: DNA barcoding reveals a new species in Britain, Lithothamnion erinaceum sp. nov. (Hapalidiales, Rhodophyta). European Journal of Phycology, 52: 166–178.
   Web of Science ®Google Scholar
• Monaghan, M.T., Wild, R., Elliot, M., Fujisawa, T., Balke, M., Inward, D. J., Lees, D.C., Ranaivosolo, R., Eggleton, P., Barraclough, T.G. & Vogler, A.P. (2009). Acceleratedspecies inventory on Madagascar using coalescent-based models of species delineation. Systematic Biology, 58: 298–311.
   PubMed Web of Science ®Google Scholar
• Müller, N.F. & Bouckaert, R.R. (2020). Adaptive parallel tempering for BEAST 2. bioRxiv doi: 10.1101/603514.
   Google Scholar
• Nelson, W., Sutherland, J.E., Farr, T.J., Hart, D.R., Neill, K.F., Kim, H.J. & Yoon, H.S. (2015). Multi‐gene phylogenetic analyses of New Zealand coralline algae: Corallinapetra novaezelandiae gen. et sp. nov. and recognition of the Hapalidiales ord. nov., Journal of Phycology, 51: 454−468.
   Google Scholar
• Nelson, W.A. (2009). Calcified macroalgae – critical to coastal ecosystems and vulnerable to change: a review. Marine & Freshwater Research, 60: 787−801.
   Web of Science ®Google Scholar
• Okonechnikov, K., Golosova, O., Fursov, M. & the UGENE team. (2012). Unipro UGENE: a unified bioinformatics toolkit. Bioinformatics, 28: 1166–1167.
   PubMed Web of Science ®Google Scholar
• Pardo, C., Peña, V., Barreiro, R. & Bárbara, I. (2015). A molecular and morphological study of Corallina sensu lato (Corallinales, Rhodophyta) in the Atlantic Iberian Peninsula. Cryptogamie, Algologie, 36: 31–54.
   Web of Science ®Google Scholar
• Plummer, M., Best, N., Cowles, K. & Vines, K. (2006). CODA: Convergence Diagnosis and Output Analysis for MCMC. R News, 6: 7–11.
   Google Scholar
• Postels, A. & Ruprecht, F. (1840). Illustrationes algarum in itinere circum orbem jussu imperatoris Nicolai I. Atque auspiciis navarchi Friderici Lütke annis 1826, 1827, 1828 et 1829 celoce Seniavin exsecuto in Oceano pacifico, inprimis septemtrionale ad littora rossica asiatico-americana collectarum. pp. [i-vi], [i]- iv, 1-28 [1-2, index], [Latin:] [-iv], [1]-22, [1-2, index], 40 pls. Typis Eduardi Pratz, Petropoli [St. Petersburg].
   Google Scholar
• Puillandre, N., Lambert, A., Brouillet, S. & Achaz, G. (2012). ABGD, Automatic Barcode Gap Discovery for primary species delimitation. Molecular Ecology, 21: 1864–1877.
   PubMed Web of Science ®Google Scholar
• R Core Team (2019). R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna.
   Google Scholar
• Rambaut, A., Drummond, A.J., Xie, D., Baele, G. & Suchard, M.A. (2018). Posterior summarization in Bayesian phylogenetics using Tracer 1.7. Systematic Biology, 67: 901–904.
   PubMed Web of Science ®Google Scholar
• Rasband, W.S. (1997– 2018). ImageJ. U.S. National Institutes of Health, Bethesda, Maryland. http://imagej.nih.gov/ij/.
   Google Scholar
• Ronquist, F., Teslenko, M., van der Mark, P., Ayres, D.L., Darling, A., Höhna, S., Larget, B., Liu, L., Suchard, M.A. & Huelsenbeck, J.P. (2012). MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space. Systematic Biology, 61: 539–542.
   PubMed Web of Science ®Google Scholar
• Saunders, G.W. (2005). Applying DNA barcoding to red macroalgae: a preliminary appraisal holds promise for future applications. Philosophical Transactions of the Royal Society of London, B, Biological Sciences, 360: 1879–1888.
   PubMed Web of Science ®Google Scholar
• Scott, S. (2017). A Biophysical Profile of the Tristan da Cunha Archipelago. Commissioned and reviewed by the Pew Charitable Trusts. https://www.pewtrusts.org/-/media/assets/2019/07/cp_on_a_remote_archipelago_rich_biodiversity_faces_threats.pdf.
   Google Scholar
• Scott, S. & Holt, R. 2016. Underwater life of Gough Island, South Atlantic Ocean. Marine
   Google Scholar
• Silva, P.C., Basson, P.W. & Moe, R.L. (1996). Catalogue of the benthic marine algae of the Indian Ocean. University of California Publications in Botany, 79: 1–1259.
   Google Scholar
• Thiel, M. & Gutow, L. (2005). The ecology of rafting in the marine environment. II. The rafting organisms and community. Oceanography and Marine Biology, an Annual Review, 42: 181–263.
   Web of Science ®Google Scholar
• Twist, B.A., Neill, K.F., Bilewitch, J., Jeong, S.Y., Sutherland, J.E. & Nelson, W.A. (2019). High diversity of coralline algae in New Zealand revealed: Knowledge gaps and implications for future research. PLoS ONE, 14(12): e0225645.
   PubMed Web of Science ®Google Scholar
• Walker, R.H., Brodie, J., Russell, S. & Irvine, L.M. (2009). The taxonomy and biodiversity of geniculate coralline algae in the northeastern Atlantic: Corallina caespitosa sp. nov. (Corallinoideae, Rhodophyta). Journal of Phycology, 45: 287–297.
   PubMed Web of Science ®Google Scholar
• Warren, D.L., Geneva, A.J. & Lanfear, R. (2017). RWTY (R We There Yet): an R package for examining convergence of Bayesian phylogenetic analyses. Molecular Biology and Evolution, 34: 1016–1020.
   PubMed Web of Science ®Google Scholar
• Williamson, C.J., Njorka, J., Perkins, R., Yallop, M.L. & Brodie, J. (2014). Skeletal mineralogy of geniculate corallines: providing context for climate change and ocean acidification. Marine Ecology Progress Series, 531: 71–84.
   Google Scholar
• Williamson, C.J., Walker, R.H., Robba, L., Yesson, C., Russell, S., Irvine, L.M. & Brodie, J. (2015). Towards resolution of diversity in Corallina (Tribe Corallineae, Rhodophyta) and related genera. Phycologia, 54: 2–11.
   Web of Science ®Google Scholar
• Yoon, H.S., Hackett, J.D. & Bhattacharya, D. (2002). A single origin of the peridinin- and fucoxanthin-containing plastids in dinoflagellates through tertiary endosymbiosis. Proceedings of the National Academy of Sciences USA, 99: 11724–11729.
   Google Scholar
• Zhang, J., Kapli, P., Pavlidis, P. & Stamatakis, A. (2013). A general species delimitation method with applications to phylogenetic placements. Bioinformatics, 29: 2869–2876.
   PubMed Web of Science ®Google Scholar