References
- Berman HM, Battistuz T, Bhat TN, Bluhm WF, Bourne PE, Burkhardt K, Feng Z, Gilliland GL, Iype L, Jain S, Fagan P, Marvin J, Padilla D, Ravichandran V, Schneider B, Thanki N, Weissig H, Westbrook JD, Zardecki C. The Protein Data Bank. Acta Crystallogr D Biol Crystallogr 2002; 58: 899–907
- Drew D, Froderberg L, Baars L, de Gier JW. Assembly and overexpression of membrane proteins in Escherichia coli. Biochim Biophys Acta 2003; 1610: 3–10
- Fleishman SJ, Unger VM, Ben-Tal N. Transmembrane protein structures without X-rays. Trends Biochem Sci 2006; 31: 106–113
- Forrest LR, Tang CL, Honig B. On the accuracy of homology modeling and sequence alignment methods applied to membrane proteins. Biophys J 2006; 91: 508–517
- Govindarajan S, Recabarren R, Goldstein RA. Estimating the total number of protein folds. Proteins 1999; 35: 408–414
- Granseth E, Daley DO, Rapp M, Melen K, von Heijne G. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. J Mol Biol 2005; 352: 489–494
- Jones DT. Do transmembrane protein superfolds exist?. FEBS Lett 1998; 423: 281–285
- Krogh A, Larsson B, von Heijne G, Sonnhammer EL. Predicting transmembrane topology with a hidden Markov model: application to complete genomes. J Mol Biol 2001; 305: 567–580
- Martin-Galiano AJ, Frishman D. Defining the fold space of membrane proteins: the CAMPS database. Proteins 2006; 64: 906–922
- Murzin AG, Brenner SE, Hubbard T, Chothia C. SCOP: a structural classification of proteins database for the investigation of sequences and structures. J Mol Biol 1995; 247: 536–540
- Oberai A, Ihm Y, Kim S, Bowie JU. A limited universe of membrane protein families and folds. Protein Sci 2006; 15: 1723–1734
- Ubarretxena-Belandia I, Engelman DM. Helical membrane proteins: diversity of functions in the context of simple architecture. Curr Opin Struct Biol 2001; 11: 370–376
- Wagner S, Bader ML, Drew D, de Gier JW. Rationalizing membrane protein overexpression. Trends Biotechnol 2006; 24: 364–371
- Wallin E, Von Heijne G. Genome-wide analysis of integral membrane proteins from eubacterial, archaean and eukaryotic organisms. Prot Sci 1998; 7(4)1029–1038
- White SH. The progress of membrane protein structure determination. Protein Sci 2004; 13: 1948–1949
- Yarov-Yarovoy V, Schonbrun J, Baker D. Multipass membrane protein structure prediction using Rosetta. Proteins 2006; 62: 1010–1025