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Research Article

Effects of QTL parameters and marker density on efficiency of Haley–Knott regression interval mapping of QTL with complex traits and use of artificial neural network for prediction of the efficiency of HK method in livestock

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Pages 247-255 | Received 22 Feb 2011, Accepted 15 Feb 2012, Published online: 02 Apr 2012

References

  • Baret , PV , Knott , SA and Visscher , PM . 1998 . On the use of linear regression and maximum likelihood for QTL mapping in half-sib designs . Genetical Research , 72 : 149 – 158 .
  • Broman , KW . 2001 . Review of statistical methods for QTL mapping in experimental cross . Lab Animal , 30 ( 7 ) : 44 – 52 .
  • Broman , KW and Sen , S . 2009 . A guide to QTL mapping with R/qtl 2 – 132 . Springer , NY
  • Churchill , GA and Doerge , RW . 1994 . Empirical threshold values for quantitative trait mapping . Genetics , 138 : 963 – 971 .
  • Darvasi , A , Weinreb , A , Minke , V , Weller , JI and Soller , M . 1993 . Detecting marker-QTL linkage and estimating QTL gene effect and map location using a saturated genetic map . Genetics , 134 : 943 – 951 .
  • Drummond , ST , Sudduth , KA , Joshi , A , Birrell , SJ and Kitchen , NR . 2004 . Statistical and neural methods for site-specific yield prediction . Transactions of the ASAE , 46 : 5 – 14 .
  • Feenstra , B , Skovgaard , IM and Broman , KW . 2006 . Mapping quantitative trait loci by an extension of the Haley–Knott regression method using estimating equations . Genetics , 173 : 2269 – 2282 .
  • Haley , CS and Knott , SA . 1992 . A simple regression method for mapping quantitative trait loci in line crosses using flanking markers . Heredity , 69 : 315 – 324 .
  • Khazaei , J , Chegini , GR and Kianmehr , MH . 2005 . Modeling physical damage and percentage of threshed pods of chickpea in a finger type thresher using artificial neural networks. Journal of Lucrari Stiintifice . Seria Agronomie , 48 : 594 – 607 .
  • Khazaei , J , Shahbazi , F , Massah , J , Nikravesh , M and Kianmehr , MH . 2008 . Evaluation and modeling of physical and physiological damage to wheat seeds under successive impact loadings: mathematical and neural networks modeling . Crop Science , 48 : 1532 – 1544 .
  • Lek , S , Delacoste , M , Baran , P , Dimopoulos , I , Lauga , J and Aulagnier , S . 1996 . Application of neural networks to modeling nonlinear relationships in ecology . Ecological Modelling , 90 : 39 – 52 .
  • Mackay , TF . 2001 . The genetic architecture of quantitative traits . Annual Review of Genetics , 35 : 303 – 339 .
  • Mittal , GS and Zhang , J . 2000 . Prediction of temperature and moisture content of frankfurters during thermal processing using neural network . Meat Science , 55 : 13 – 24 .
  • Park , SJ , Hwang , CS and Vlek , PLG . 2005 . Comparison of adaptive techniques to predict crop yield response under varying soil and land management conditions . Agricultural Systems , 85 : 59 – 81 .
  • Soller , M . 1994 . Marker-assisted selection, an overview . Animal Biotechnology , 5 : 193 – 208 .
  • Soller , M , Brody , T and Genizi , A . 1976 . On the power of experimental designs for the detection of linkage between marker loci and quantitative loci in crosses between inbred lines . Theoretical and Applied Genetics , 47 : 35 – 39 .
  • Valdar , W , Flint , J and Mott , R . 2006 . Simulating the collaborative cross: power of quantitative trait loci detection and mapping resolution in large sets of recombinant inbred strains of mice . Genetics , 172 : 1783 – 1797 .
  • Visscher , PM , Thompson , R and Haley , CS . 1996 . Confidence intervals for QTL locations using bootstrapping . Genetics , 143 : 1013 – 1020 .
  • Zhang , Q , Yang , SX , Mittal , GS and Yi , S . 2002 . Prediction of performance indices and optimal parameters of rough rice drying using neural networks . Biosystems Engineering , 83 : 281 – 290 .
  • Zhu , CS , Huang , J and Zhang , YM . 2007 . Mapping binary trait loci in the F2:3 design . Heredity , 98 : 337 – 344 .

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