775
Views
3
CrossRef citations to date
0
Altmetric
Research Article

Genotypes and haplotype combination of DCAF7 gene sequence variants are associated with number of thoracolumbar vertebrae and carcass traits in Dezhou donkey

, , , , , , , & ORCID Icon show all
Pages 31-39 | Received 01 Jun 2022, Accepted 15 Nov 2022, Published online: 24 Jan 2023

References

  • Alvarado E, Yousefelahiyeh M, Alvarado G, Shang R, Whitman T, Martinez A, Yu Y, Pham A, Bhandari A, Wang B, Nissen RM. 2016. Wdr68 mediates dorsal and ventral patterning events for craniofacial development. PLoS One. 11(11):e0166984.
  • Barrett JC, Fry B, Maller J, Daly MJ. 2005. Haploview: analysis and visualization of LD and haplotype maps. Bioinformatics. 21(2):263–265.
  • Bharambe HS, Joshi A, Yogi K, Kazi S, Shirsat NV. 2020. Restoration of miR-193a expression is tumor-suppressive in MYC amplified Group 3 medulloblastoma. Acta Neuropathol Commun. 8(1):70.
  • Bonano M, Martín E, Moreno Ruiz Holgado MM, Silenzi Usandivaras GM, Ruiz De Bigliardo G, Aybar MJ. 2018. Molecular characterization of wdr68 gene in embryonic development of Xenopus laevis. Gene Express Patterns. 30:55–63.
  • Chen R, Davydov EV, Sirota M, Butte AJ. 2010. Non-synonymous and synonymous coding SNPs show similar likelihood and effect size of human disease association. PLoS One. 5(10):e13574.
  • Erdenee S, Akhatayeva Z, Pan C, Cai Y, Xu H, Chen H, Lan X. 2021. An insertion/deletion within the CREB1 gene identified using the RNA-sequencing is associated with sheep body morphometric traits. Gene. 775:145444.
  • Fan Y, Xing Y, Zhang Z, Ai H, Ouyang Z, Ouyang J, Yang M, Li P, Chen Y, Gao J, et al. 2013. A further look at porcine chromosome 7 reveals VRTN variants associated with vertebral number in Chinese and western pigs. PloS One. 8(4):e62534.
  • Gao Y, Huang B, Bai F, Wu F, Zhou Z, Lai Z, Li S, Qu K, Jia Y, Lei C, Dang R. 2019. Two novel SNPs in RET gene are associated with cattle body measurement traits. Animals (Basel). 9(10):836.
  • Guo F, Luo G, Ju Z, Wang X, Huang J, Xu Y. 2014. Association of SPEF2 gene splices variant and functional SNP with semen quality traits in Chinese Holstein bulls. J Nanjing Agricult Univer. 37(3):119–125.
  • Hou H, Li H, Yang L, Zhang X, Shi T, Wang X, Zhao Z, Zhang L. 2018. Association between NCAPG-DCAF16 region polymorphisms and growth traits in Dezhou Donkeys. Acta Vet Zootech Sinica. 50(2):302–313.
  • Huang Y, Zhan Z, Li X, Wu S, Sun Y, Xue J, Lan X, Lei C, Zhang C, Jia Y, Chen H. 2014. SNP and haplotype analysis reveal IGF2 variants associated with growth traits in Chinese Qinchuan cattle. Mol Biol Rep. 41(2):591–598.
  • Jin Y, Yang Q, Zhang M, Zhang S, Cai H, Dang R, Lei C, Chen H, Lan X. 2019. Identification of a novel polymorphism in Bovine lncRNA ADNCR gene and its association with growth traits. Anim Biotechnol. 30(2):159–165.
  • Lai Z, Li S, Wu F, Zhou Z, Gao Y, Yu J, Lei C, Dang R. 2020. Genotypes and haplotype combination of ACSL3 gene sequence variants is associated with growth traits in Dezhou donkey. Gene. 743:144600.
  • Leslie EJ, Carlson JC, Shaffer JR, Feingold E, Wehby G, Laurie CA, Jain D, Laurie CC, Doheny KF, McHenry T, et al. 2016. A multi-ethnic genome-wide association study identifies novel loci for non-syndromic cleft lip with or without cleft palate on 2p24.2, 17q23 and 19q13. Hum Mol Genet. 25(13):2862–2872.
  • Li C, Zhang X, Cao Y, Wei J, You S, Jiang Y, Cai K, Wumaier W, Guo D, Qi J. 2017. Multi-vertebrae variation potentially contribute to carcass length and weight of Kazakh sheep. Small Rumin Res. 150:8–10.
  • Li M, Zhu M, Chai W, Wang Y, Fan D, Lv M, Jiang X, Liu Y, Wei Q, Wang C. 2021. Determination of lipid profiles of Dezhou donkey meat using an LC-MS-based lipidomics method. J Food Sci. 86(10):4511–4521.
  • Li Y, Ma Q, Zhou M, Zhang Z, Han Y, Liu G, Zhu M, Wang C. 2022. A metabolomics comparison in milk from two Dezhou donkey strains. Eur Food Res Technol. 248:1267–1275.
  • Liu J, Sun S, Han L, Li X, Sun Z. 2010. Association between single nucleotide polymorphism of ActRIIB gene and vertebra number variation in small tail Han sheep. Acta Vet Zootech Sinica. 41(8):951–954.
  • Liu Z, Gao Q, Wang T, Chai W, Zhan Y, Akhtar F, Zhang Z, Li Y, Shi X, Wang C. 2022. Multi-thoracolumbar variations and NR6A1 gene polymorphisms potentially associated with body size and carcass traits of Dezhou Donkey. Animals. 12(11):1349.
  • Morriss GR, Jaramillo CT, Mikolajczak CM, Duong S, Jaramillo MS, Cripps RM. 2013. The drosophila wings apart gene anchors a novel, evolutionarily conserved pathway of neuromuscular development. Genetics. 195(3):927–940.
  • Napolitano G, Malta CD, Esposito A, Araujo MEGD, Pece S, Bertalot G, Matarese M, Benedetti V, Zampelli A, Stasyk T, et al. 2020. A substrate-specific mTORC1 pathway underlies Birt-Hogg-Dube syndrome. Nature. 585(7826):597–602.
  • Nissen RM, Amsterdam A, Hopkins N. 2006. A zebrafish screen for craniofacial mutants identifies wdr68 as a highly conserved gene required for endothelin-1 expression. BMC Dev Biol. 6:28.
  • Porstmann T, Santos CR, Griffiths B, Cully M, Wu M, Leevers S, Griffiths JR, Chung YL, Schulze A. 2008. SREBP activity is regulated by mTORC1 and contributes to Akt-dependent cell growth. Cell Metab. 8(3):224–236.
  • Sun J, Gao Y, Liu D, Ma W, Xue J, Zhang C, Lan X, Lei C, Chen H. 2012. Haplotype combination of the bovine INSIG1 gene sequence variants and association with growth traits in Nanyang cattle. Genome. 55(6):429–436.
  • Wang B, Doan D, Roman PY, Alvarado E, Alvarado G, Bhandari A, Mohanty A, Mohanty S, Nissen RM. 2013. Wdr68 requires nuclear access for craniofacial development. PLoS One. 8(1):e54363.
  • Wang C, Li H, Guo Y, Huang J, Sun Y, Min J, Wang J, Fang X, Zhao Z, Wang S, et al. 2020. Donkey genomes provide new insights into domestication and selection for coat color. Nat Commun. 11(1):6014.
  • Yang S, He H, Zhang Z, Niu H, Chen F, Wen Y, Xu J, Dang R, Lan X, Lei C, et al. 2020. Determination of genetic effects of SERPINA3 on important growth traits in beef cattle. Anim Biotechnol. 31(2):164–173.
  • Yu D, Cattoglio C, Xue Y, Zhou Q. 2019. A complex between DYRK1A and DCAF7 phosphorylates the C-terminal domain of RNA polymerase II to promote myogenesis. Nucleic Acids Res. 47(9):4462–4475.
  • Yue J, Guo H, Zhou W, Liu X, Wang L, Gao H, Hou X, Zhang Y, Yan H, Wei X, et al. 2018. Polymirphism sites of TGFβ3 gene and its association analysis with vertebral number of porcine. China Anim Husbandry Vet Med. 45(3):738–744.
  • Zhang Z, Zhan Y, Han Y, Liu Z, Wang Y, Wang C. 2021. Estimation of liveweight from body measurements through best fitted regression model in Dezhou donkey breed. J Equine Vet Sci. 101:103457.
  • Zhao J, Sauvage C, Bitton F, Causse M. 2022. Multiple haplotype-based analyses provide genetic and evolutionary insights into tomato fruit weight and composition. Hortic Res. 9:uhab009.
  • Zheng L, Zhang G, Dong Y, Wen Y, Dong D, Lei C, Qi X, Chen H, Huo L, Huang Y. 2019. Genetic variant of MYLK4 gene and its association with growth traits in Chinese cattle. Anim Biotechnol. 30(1):30–35.