Advanced search
Publication Cover
Computer Methods in Biomechanics and Biomedical Engineering Volume 19, 2016 - Issue 11
Submit an article Journal homepage
178
Views
6
CrossRef citations to date
0
Altmetric
Original Articles

Controlling seepage in discrete particle simulations of biological systems

Bruce S. GardinerSchool of Engineering and Information Technology, Murdoch University, Perth, Australia
,
Grand R. JoldesIntelligent Systems for Medicine Laboratory, School of Mechanical and Chemical Engineering, The University of Western Australia, Perth, AustraliaCorrespondence[email protected]
,
Kelvin K. L. WongEngineering Computational Biology, School of Computer Science and Software Engineering, The University of Western Australia, Perth, Australia
,
Chin Wee TanStructural Biology Division, The Walter and Eliza Hall Institute of Medical Research, Victoria, Australia;Department of Medical Biology, University of Melbourne, Victoria, Australia
&
David W. SmithEngineering Computational Biology, School of Computer Science and Software Engineering, The University of Western Australia, Perth, Australia
Pages 1160-1170 | Received 22 May 2015, Accepted 28 Oct 2015, Published online: 02 Dec 2015

References

  • Asgari M, Ghanbari A, Nahavandi S. 2011. 3D particle-based cell modelling for haptic microrobotic cell injection. Proceedings of the 15th International Conference on Mechatronics Technology. Melbourne.
  • Ball RC, Melrose JR. 1997. A simulation technique for many spheres in quasi-static motion under frame invariant pair drag and Brownian forces. Physica A. 247:444–472.10.1016/S0378-4371(97)00412-3
  • Cundall PA, Strack ODL. 1979. A discrete numerical model for granular assemblies. Géotechnique. 29:47–65.10.1680/geot.1979.29.1.47
  • Donzé FV, Richefeu V, Magnier S-A. 2009. Advances in discrete element method applied to soil, rock and concrete mechanics. State of the art of geotechnical engineering. EJGE. 1:44.
  • Drasdo D. 2000. Buckling instabilities in one-layered growing tissues. Phys Rev Lett. 84:4424–4427.
  • Durian DJ. 1995. Foam mechanics at the bubble scale. Phys Rev Lett. 75:4780–4783.10.1103/PhysRevLett.75.4780
  • Durian DJ. 1997. Bubble-scale model of foam mechanics:mMelting, nonlinear behavior, and avalanches. Phys Rev E. 55:1739–1751.10.1103/PhysRevE.55.1739
  • Galle J, Loeffler M, Drasdo D. 2005. Modeling the effect of deregulated proliferation and apoptosis on the growth dynamics of epithelial cell populations in vitro. Biophys J. 88:62–75.10.1529/biophysj.104.041459
  • Gardiner BS, Dlugogorski BZ, Jameson GJ. 2000. The steady shear of three-dimensional wet polydisperse foams. J Non-Newtonian Fluid Mech. 92:151–166.10.1016/S0377-0257(00)00102-6
  • Gardiner BS, Wong KKL, Joldes GR, Rich AJ, Tan CW, Burgess AW, Smith DW 2015. Discrete element framework for modelling extracellular matrix, deformable cells and subcellular components. PLoS Comput Biol. doi:10.1371/journal.pcbi.1004544.
  • Iwashita K, Oda M. 2000. Micro-deformation mechanism of shear banding process based on modified distinct element method. Powder Technol. 109:192–205.10.1016/S0032-5910(99)00236-3
  • Joldes GR, Wittek A, Miller K. 2011. An adaptive dynamic relaxation method for solving nonlinear finite element problems. Application to brain shift estimation. Int J Numer Method Biom Eng. 27:173–185.10.1002/cnm.v27.2
  • Liedekerke PV, Tijskens E, Ramon H, Ghysels P, Samaey G, Roose D. 2010. Particle-based model to simulate the micromechanics of biological cells. Phys Rev E. 81:061906.
  • Odenthal T, Smeets B, Van Liedekerke P, Tijskens E, Van Oosterwyck H, Ramon H. 2013. Analysis of initial cell spreading using mechanistic contact formulations for a deformable cell model. PLoS Comput Biol. 9:e1003267.10.1371/journal.pcbi.1003267
  • Smallwood R. 2009. Computational modeling of epithelial tissues. WIREs Syst Biol Med. 1:191–201.10.1002/wsbm.18
  • Zohdi T. 2014. A direct particle-based computational framework for electrically enhanced thermo-mechanical sintering of powdered materials. Math Mech Solids. 19:93–113.10.1177/1081286513505472

Reprints and Corporate Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

To request a reprint or corporate permissions for this article, please click on the relevant link below:

Order Reprints Request Corporate Permissions

Academic Permissions

Please note: Selecting permissions does not provide access to the full text of the article, please see our help page How do I view content?

Obtain permissions instantly via Rightslink by clicking on the button below:

Request Academic Permissions

If you are unable to obtain permissions via Rightslink, please complete and submit this Permissions form. For more information, please visit our Permissions help page.

Related research

People also read lists articles that other readers of this article have read.

Recommended articles lists articles that we recommend and is powered by our AI driven recommendation engine.

Cited by lists all citing articles based on Crossref citations.
Articles with the Crossref icon will open in a new tab.