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Articles

A computational framework for investigating bacteria transport in microvasculature

ORCID Icon, ORCID Icon & ORCID Icon
Pages 438-449 | Received 03 Nov 2021, Accepted 12 Apr 2022, Published online: 29 Apr 2022

References

  • Albrecht KH, Gaehtgens P, Pries A, Heuser M. 1979. Fahraeus effect in narrow capillaries (Id 3.3 to 11.0 Mu-M). Microvasc Res. 18(1):33–47.
  • Berg HC, Brown DA. 1972. Chemotaxis in Escherichia coli analysed by three-dimensional tracking. Nature. 239(5374):500–504.
  • Bermudes D, Zheng LM, King IC. 2002. Live bacteria as anticancer agents and tumor-selective protein delivery vectors. Curr Opin Drug Discov Dev. 5(2):194–199.
  • Bhattacharjee T, Datta SS. 2019. Bacterial hopping and trapping in porous media. Nat Commun. 10(1):1–9.
  • Biondi SA, Quinn JA, Goldfine H. 1998. Random motility of swimming bacteria in restricted geometries. AIChE J. 44(8):1923–1929.
  • Broadway KM, Suh S, Behkam B, Scharf BE. 2017. Optimizing the restored chemotactic behavior of anticancer agent Salmonella enterica serovar Typhimurium VNP20009. J Biotechnol. 251:76–83.
  • Canham PB. 1970. The minimum energy of bending as a possible explanation of the biconcave shape of the human red blood cell. J Theor Biol. 26(1):61–81.
  • Chandran KB, Rittgers SE, Yoganathan AP. 2012. Biofluid mechanics: The human circulation, 2nd ed. Boca Raton, FL; London; New York: CRC Press, Taylor & Francis Group.
  • Chen KC, Ford RM, Cummings PT. 1998. Mathematical models for motile bacterial transport in cylindrical tubes. J Theor Biol. 195(4):481–504.
  • Clairmont C, Lee KC, Pike J, Ittensohn M, Low KB, Pawelek J, Bermudes D, Brecher SM, Margitich D, Turnier J, et al. 2000. Biodistribution and genetic stability of the novel antitumor agent VNP20009, a genetically modified strain of Salmonella typhimurium. J Infect Dis. 181(6):1996–2002.
  • Dasanna AK, Mauer J, Gompper G, Fedosov DA. 2021. Importance of viscosity contrast for the motion of erythrocytes in microcapillaries. Front. Phys. 9:666913 (1–9). [accessed 2022 Feb 8].
  • Fåhraeus R, Lindqvist T. 1931. The viscosity of the blood in narrow capillary tubes. Am J Physiol Content. 96(3):562–568.
  • Feher J. 2012. Muscle energetics, fatigue, and training. In: Quantitative human physiology. San Diego, CA: Elsevier Academic Press. p:270–280.
  • Forbes NS, Munn LL, Fukumura D, Jain RK. 2003. Sparse initial entrapment of systemically injected Salmonella typhimurium leads to heterogeneous accumulation within tumors. Cancer Res. 63(17):5188–5193.
  • Freund JB. 2014. Numerical simulation of flowing blood cells. Annu Rev Fluid Mech. 46(1):67–95.
  • Gaehtgens P, Schmid-Schönbein H. 1982. Mechanisms of dynamic flow adaptation of mammalian erythrocytes. Naturwissenschaften. 69(6):294–296.
  • Guest MM, Bond TP, Cooper RG, Derrick JR. 1963. Red blood cells: change in shape in capillaries. Science. 142(3597):1319–1321.
  • Heimann DM, Rosenberg SA. 2003. Continuous intravenous administration of live genetically modified Salmonella typhimurium in patients with metastatic melanoma. J Immunother. 26(2):179–180.
  • Hochmuth RM, Marple RN, Sutera SP. 1970. Capillary blood flow. I. Erythrocyte deformation in glass capillaries. Microvasc Res. 2(4):409–419.
  • Kratz A, Lewandrowski KB. 1998. Case records of the Massachusetts General Hospital. Weekly clinicopathological exercises. Normal reference laboratory values. N Engl J Med. 339(15):1063–1072.
  • Licata NA, Mohari B, Fuqua C, Setayeshgar S. 2016. Diffusion of bacterial cells in porous media. Biophys J. 110(1):247–257.
  • Lin KL, Lopez L, Hellums JD. 1973. Blood flow in capillaries . Microvasc Res. 5(1):7–19.
  • Liu Z, Chen W, Papadopoulos KD. 1997. Bacterial motility, collisions, and aggregation in a 3-μm-diameter capillary. Biotechnol Bioeng. 53(2):238–241.
  • Michl P, Gress T. 2004. Bacteria and bacterial toxins as therapeutic agents for solid tumors. Curr Cancer Drug Targets. 4(8):689–702.
  • Nagendra K, Tafti DK, Viswanath K. 2014. A new approach for conjugate heat transfer problems using immersed boundary method for curvilinear grid based solvers. J Comput Phys. 267:225–246.
  • Pozrikidis C. 2003. Modeling and simulation of capsules and biological cells. Boca Raton, FL: Chapman & Hall/CRC.
  • Pries AR, Neuhaus D, Gaehtgens P. 1992. Blood viscosity in tube flow: Dependence on diameter and hematocrit. Am J Physiol - Hear Circ Physiol. 263(6):H1770–H1778.
  • Pries AR, Secomb TW. 2005. Microvascular blood viscosity in vivo and the endothelial surface layer. Am J Physiol Heart Circ Physiol. 289(6):H2657–H2664.
  • Pries AR, Secomb TW, Gaehtgens P. 2000. The endothelial surface layer. Pflugers Arch - Eur J Physiol. 440(5):653–666.
  • Saltzman DA. 2005. Cancer immunotherapy based on the killing of Salmonella typhimurium-infected tumour cells. Expert Opin Biol Ther. 5(4):443–449.
  • Secomb TW, Pries AR. 2013. Blood viscosity in microvessels: Experiment and theory. C R Phys. 14(6):470–478.
  • Secomb TW, Skalak R, Özkaya N, Gross JF. 1986. Flow of axisymmetric red blood cells in narrow capillaries. J Fluid Mech. 163(1):405–423.
  • Skalak R, Branemark PI. 1969. Deformation of red blood cells in capillaries. Science. 164(3880):717–719.
  • Sugihara-Seki M, Fu BMM. 2005. Blood flow and permeability in microvessels. Fluid Dyn Res. 37(1-2):82–132.
  • Suzuki Y, Tateishi N, Soutani M, Maeda N. 1996. Flow behavior of erythrocytes in microvessels and glass capillaries: Effects of erythrocyte deformation and erythrocyte aggregation. Int J Microcirc Clin Exp. 16(4):187–194.
  • Tafti DK. 2000. Genidlest - A scalable parallel computational tool for simulating complex turbulent flows. Am Soc Mech Eng Fluids Eng Div FED. 256:347–356.
  • Thamm DH, Kurzman ID, King I, Li Z, Sznol M, Dubielzig RR, Vail DM, MacEwen EG. 2005. Systemic administration of an attenuated, tumor-targeting Salmonella typhimurium to dogs with spontaneous neoplasia: Phase I evaluation. Clin Cancer Res. 11(13):4827–4834.
  • Tomaiuolo G, Simeone M, Martinelli V, Rotoli B, Guido S. 2009. Red blood cell deformation in microconfined flow. Soft Matter. 5(19):3736–3740.
  • Toso JF, Gill VJ, Hwu P, Marincola FM, Restifo NP, Schwartzentruber DJ, Sherry RM, Topalian SL, Yang JC, Stock F, et al. 2002. Phase I study of the intravenous administration of attenuated Salmonella typhimurium to patients with metastatic melanoma. J Clin Oncol. 20(1):142–152.
  • Trayanova NA, Boyle PM. 2015. Cardiac arrhythmias: Mechanistic knowledge and innovation from computer models. Model Simul Appl. 14:1–27.
  • Wadhwa N, Berg HC. 2022. Bacterial motility: machinery and mechanisms. Nat Rev Microbiol. 20(3):161–173.
  • Way SS, Thompson LJ, Lopes JE, Hajjar AM, Kollmann TR, Freitag NE, Wilson CB. 2004. Characterization of flagellin expression and its role in Listeria monocytogenes infection and immunity. Cell Microbiol. 6(3):235–242.
  • Wolfe J, Berg HC. 1989. Migration of bacteria in semisolid agar. Proc Natl Acad Sci U S A. 86(18):6973–6977.
  • Zarda PR, Chien S, Skalak R. 1977. Elastic Deformations of Red blood cells. J Biomech. 10(4):211–221.
  • Zhou S, Gravekamp C, Bermudes D, Liu K. 2018. Tumour-targeting bacteria engineered to fight cancer. Nat Rev Cancer. 18(12):727–743.
  • Zhu L, Lauga E, Brandt L. 2013. Low-Reynolds-number swimming in a capillary tube. J Fluid Mech. 726:285–311.

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