MicroRNA profiling from dried blood samples

References

• Marrugo-Ramirez J, Mir M, Samitier J. Blood-based cancer biomarkers in liquid biopsy: a promising non-invasive alternative to tissue biopsy. Int J Mol Sci. 2018;19:2877.
   Web of Science ®Google Scholar
• Jiang Y, Wang D. Liquid biopsy in the OMICS era of tumor medicine. Open Access J Biomed Eng Appl. 2018;1:115.
   PubMedGoogle Scholar
• Duffy MJ. Tumor markers in clinical practice: a review focusing on common solid cancers. Med Princ Pract. 2013;22:4–11.
   PubMed Web of Science ®Google Scholar
• Zhou Q, Zhang Z, Bei Y, et al. Circular RNAs as novel biomarkers for cardiovascular diseases. Adv Exp Med Biol. 2018;1087:159–170.
   PubMed Web of Science ®Google Scholar
• Kitamura Y, Kojima M, Kurosawa T, et al. Proteomic profiling of exosomal proteins for blood-based biomarkers in Parkinson's disease. Neuroscience. 2018;392:121–128.
   PubMed Web of Science ®Google Scholar
• Leuzy A, Heurling K, Ashton NJ, et al. In vivo detection of Alzheimer's disease. Yale J Biol Med. 2018;91:291–300.
   PubMedGoogle Scholar
• Lippi G, Plebani M. A Six-Sigma approach for comparing diagnostic errors in healthcare-where does laboratory medicine stand?. Ann Transl Med. 2018;6:180.
   PubMed Web of Science ®Google Scholar
• Simundic AM, Lippi G. Preanalytical phase–a continuous challenge for laboratory professionals. Biochem Med. 2012;22:145–149.
   Web of Science ®Google Scholar
• Plebani M. Diagnostic errors and laboratory medicine - causes and strategies. EJIFCC. 2015;26:7–14.
   PubMedGoogle Scholar
• Lippi G, Mattiuzzi C, Bovo C. Are we getting better at the preanalytical phase or just better at measuring it? J Lab Precis Med. 2018;3. DOI:10.21037/jlpm.2018.01.03
   Google Scholar
• Kozomara A, Griffiths-Jones S. miRBase: annotating high confidence microRNAs using deep sequencing data. Nucl Acids Res. 2014;42:D68–D73. (Database issue)
   PubMed Web of Science ®Google Scholar
• Bartel DP. MicroRNAs: target recognition and regulatory functions. Cell. 2009;136:215–233.
   PubMed Web of Science ®Google Scholar
• Lee Y, Kim M, Han J, et al. MicroRNA genes are transcribed by RNA polymerase II. Embo J. 2004;23:4051–4060.
   PubMed Web of Science ®Google Scholar
• Borchert GM, Lanier W, Davidson BL. RNA polymerase III transcribes human microRNAs. Nat Struct Mol Biol. 2006;13:1097–1101.
   PubMed Web of Science ®Google Scholar
• Gregory RI, Yan KP, Amuthan G, et al. The Microprocessor complex mediates the genesis of microRNAs. Nature. 2004;432:235–240.
   PubMed Web of Science ®Google Scholar
• Bohnsack MT, Czaplinski K, Gorlich D. Exportin 5 is a RanGTP-dependent dsRNA-binding protein that mediates nuclear export of pre-miRNAs. RNA. 2004;10:185–191.
   PubMed Web of Science ®Google Scholar
• Huntzinger E, Izaurralde E. Gene silencing by microRNAs: contributions of translational repression and mRNA decay. Nat Rev Genet. 2011;12:99–110.
   PubMed Web of Science ®Google Scholar
• Bushati N, Cohen SM. microRNA functions. Annu Rev Cell Dev Biol. 2007;23:175–205.
   PubMed Web of Science ®Google Scholar
• Gregory RI, Chendrimada TP, Cooch N, et al. Human RISC couples microRNA biogenesis and posttranscriptional gene silencing. Cell. 2005;123:631–640.
   PubMed Web of Science ®Google Scholar
• Havens MA, Reich AA, Duelli DM, et al. Biogenesis of mammalian microRNAs by a non-canonical processing pathway. Nucleic Acids Res. 2012;40:4626–4640.
   PubMed Web of Science ®Google Scholar
• Abdelfattah AM, Park C, Choi MY. Update on non-canonical microRNAs. Biomol Concepts. 2014;5:275–287.
   PubMedGoogle Scholar
• Grimson A, Farh KK, Johnston WK, et al. MicroRNA targeting specificity in mammals: determinants beyond seed pairing. Mol Cell. 2007;27:91–105.
   PubMed Web of Science ®Google Scholar
• Backes C, Meese E, Lenhof HP, et al. A dictionary on microRNAs and their putative target pathways. Nucleic Acids Res. 2010;38:4476–4486.
   PubMed Web of Science ®Google Scholar
• Diener C, Hart M, Alansary D, et al. Modulation of intracellular calcium signaling by microRNA-34a-5p. Cell Death Dis. 2018;9:1008.
   PubMed Web of Science ®Google Scholar
• Thum T, Gross C, Fiedler J, et al. MicroRNA-21 contributes to myocardial disease by stimulating MAP kinase signalling in fibroblasts. Nature. 2008;456:980–984.
   PubMed Web of Science ®Google Scholar
• Seo HH, Lee S, Lee CY, et al. Multipoint targeting of TGF-beta/Wnt transactivation circuit with microRNA 384-5p for cardiac fibrosis. Cell Death Differ. 2018. DOI:10.1038/s41418-018-0187-3
   Google Scholar
• Mendell JT. MicroRNAs: critical regulators of development, cellular physiology and malignancy. Cell Cycle. 2005;4:1179–1184.
   PubMed Web of Science ®Google Scholar
• Baker M. RNA interference: MicroRNAs as biomarkers. Nature. 2010;464:1227.
   PubMed Web of Science ®Google Scholar
• Etheridge A, Lee I, Hood L, et al. Extracellular microRNA: a new source of biomarkers. Mutat Res. 2011;717:85–90.
   PubMed Web of Science ®Google Scholar
• Gatfield D, Le Martelot G, Vejnar CE, et al. Integration of microRNA miR-122 in hepatic circadian gene expression. Genes Dev. 2009;23:1313–1326.
   PubMed Web of Science ®Google Scholar
• Rüegger S, Großhans H. MicroRNA turnover: when, how, and why. Trends Biochem Sci. 2012;37:436–446.
   PubMed Web of Science ®Google Scholar
• Krol J, Busskamp V, Markiewicz I, et al. Characterizing light-regulated retinal microRNAs reveals rapid turnover as a common property of neuronal microRNAs. Cell. 2010;141:618–631.
   PubMed Web of Science ®Google Scholar
• Keller A, Kreis S, Leidinger P, et al. miRNAs in ancient tissue specimens of the tyrolean iceman. Mol Biol Evol. 2017;34:793–801.
   PubMed Web of Science ®Google Scholar
• Wang J, Robinson JF, Khan HM, et al. Optimizing RNA extraction yield from whole blood for microarray gene expression analysis. Clin Biochem. 2004;37:741–744.
   PubMed Web of Science ®Google Scholar
• Eikmans M, Rekers NV, Anholts JD, et al. Blood cell mRNAs and microRNAs: optimized protocols for extraction and preservation. Blood. 2013;121:e81–e89.
   PubMed Web of Science ®Google Scholar
• Weber DG, Casjens S, Rozynek P, et al. Assessment of mRNA and microRNA stabilization in peripheral human blood for multicenter studies and biobanks. Biomark Insights. 2010;5:95–102.
   PubMedGoogle Scholar
• Balzano F, Deiana M, Dei Giudici S, et al. miRNA stability in frozen plasma samples. Molecules. 2015;20:19030–19040.
   PubMed Web of Science ®Google Scholar
• Wilhelm AJ, den Burger JC, Swart EL. Therapeutic drug monitoring by dried blood spot: progress to date and future directions. Clin Pharmacokinet. 2014;53:961–973.
   PubMed Web of Science ®Google Scholar
• Enderle Y, Foerster K, Burhenne J. Clinical feasibility of dried blood spots: analytics, validation, and applications. J Pharm Biomed Anal. 2016;130:231–243.
   PubMed Web of Science ®Google Scholar
• Ter Heine R, Mulder JW, van Gorp EC, et al. Clinical evaluation of the determination of plasma concentrations of darunavir, etravirine, raltegravir and ritonavir in dried blood spot samples. Bioanalysis. 2011;3:1093–1097.
   PubMed Web of Science ®Google Scholar
• Garcia Boy R, Henseler J, Mattern R, et al. Determination of morphine and 6-acetylmorphine in blood with use of dried blood spots. Ther Drug Monit. 2008;30:733–739.
   PubMed Web of Science ®Google Scholar
• Sharma A, Jaiswal S, Shukla M, et al. Dried blood spots: concepts, present status, and future perspectives in bioanalysis. Drug Test Anal. 2014;6:399–414.
   PubMed Web of Science ®Google Scholar
• Denniff P, Spooner N. Volumetric absorptive microsampling: a dried sample collection technique for quantitative bioanalysis. Anal Chem. 2014;86:8489–8495.
   PubMed Web of Science ®Google Scholar
• Patnaik SK, Mallick R, Yendamuri S. Detection of microRNAs in dried serum blots. Anal Biochem. 2010;407:147–149.
   PubMed Web of Science ®Google Scholar
• Ponnusamy V, Kapellou O, Yip E, et al. A study of microRNAs from dried blood spots in newborns after perinatal asphyxia: a simple and feasible biosampling method. Pediatr Res. 2016;79:799–805.
   PubMed Web of Science ®Google Scholar
• Rodil-Garcia P, Arellanes-Licea EDC, Montoya-Contreras A, et al. Analysis of MicroRNA expression in newborns with differential birth weight using newborn screening cards. Int J Mol Sci. 2017;18:2552.
   PubMed Web of Science ®Google Scholar
• Kahraman M, Laufer T, Backes C, et al. Technical stability and biological variability in microRNAs from dried blood spots: a lung cancer therapy-monitoring showcase. Clin Chem. 2017;63:1476–1488.
   PubMed Web of Science ®Google Scholar
• Backes C, Haas J, Leidinger P, et al. miFRame: analysis and visualization of miRNA sequencing data in neurological disorders. J Transl Med. 2015;13:224.
   PubMed Web of Science ®Google Scholar
• Pirritano M, Fehlmann T, Laufer T, et al. Next generation sequencing analysis of total small noncoding RNAs from low input RNA from dried blood sampling. Anal Chem. 2018;90:11791–11796.
   PubMed Web of Science ®Google Scholar
• Backes C, Sedaghat-Hamedani F, Frese K, et al. Bias in high-throughput analysis of miRNAs and implications for biomarker studies. Anal Chem. 2016;88:2088–2095.
   PubMed Web of Science ®Google Scholar
• Fehlmann T, Reinheimer S, Geng C, et al. cPAS-based sequencing on the BGISEQ-500 to explore small non-coding RNAs. Clin Epigenetics. 2016;8:123.
   PubMed Web of Science ®Google Scholar
• Friedlander MR, Mackowiak SD, Li N, et al. miRDeep2 accurately identifies known and hundreds of novel microRNA genes in seven animal clades. Nucleic Acids Res. 2012;40:37–52.
   PubMed Web of Science ®Google Scholar
• Fehlmann T, Backes C, Kahraman M, et al. Web-based NGS data analysis using miRMaster: a large-scale meta-analysis of human miRNAs. Nucleic Acids Res. 2017;45:8731–8744.
   PubMed Web of Science ®Google Scholar
• Backes C, Fehlmann T, Kern F, et al. miRCarta: a central repository for collecting miRNA candidates. Nucleic Acids Res. 2018;46:D160–D1D7.
   PubMed Web of Science ®Google Scholar
• Akhtar MM, Micolucci L, Islam MS, et al. Bioinformatic tools for microRNA dissection. Nucleic Acids Res. 2016;44:24–44.
   PubMed Web of Science ®Google Scholar
• Hanson EK, Lubenow H, Ballantyne J. Identification of forensically relevant body fluids using a panel of differentially expressed microRNAs. Anal Biochem. 2009;387:303–314.
   PubMed Web of Science ®Google Scholar