Exploitation of microbial forensics and nanotechnology for the monitoring of emerging pathogens

References

• Alivisatos AP, Johnsson KP, Peng X, Wilson TE, Loweth CJ, Bruchez MP, Schultz PG. 1996. Organization of 'nanocrystal molecules' using DNA. Nature. 382:609–611.
   PubMed Web of Science ®Google Scholar
• Allard MW. 2016. The future of whole-genome sequencing for public health and the clinic. J Clin Microbiol. 54:1946–1948.
   PubMed Web of Science ®Google Scholar
• Arita I, Nakane M, Kojima K, Yoshihara N, Nakano T, El-Gohary A. 2004. Role of a sentinel surveillance system in the context of global surveillance of infectious diseases. Lancet Infect Dis. 4:171–177.
   PubMed Web of Science ®Google Scholar
• Ashraf S, Pelaz B, del Pino P, Carril M, Escudero A, Parak WJ, Soliman MG, Zhang Q, Carrion CC. 2016. Gold-based nanomaterials for applications in nanomedicine. Top Curr Chem. 370:169–202.
   PubMed Web of Science ®Google Scholar
• Babcock IC, Nouhan PP, Rice K. 2003. Syndromic analysis of computerized emergency department patients' chief complaints: an opportunity for bioterrorism and influenza surveillance. Ann Emerg Med. 41:447–452.
   PubMed Web of Science ®Google Scholar
• Basu M, Seggerson S, Henshaw J, Jiang J, del A Cordona R, Lefave C, Boyle PJ, Miller A, Pugia M, Basu S. 2004. Nano-biosensor development for bacterial detection during human kidney infection: use of glycoconjugate-specific antibody-bound gold NanoWire arrays (GNWA). Glycoconj J. 21:487–496.
   PubMed Web of Science ®Google Scholar
• Binnewies TT, Motro Y, Hallin PF, Lund O, Dunn D, La T, Hampson DJ, Bellgard M, Wassenaar TM, Ussery DW. 2006. Ten years of bacterial genome sequencing: comparative-genomics-based discoveries. Funct Integr Genomics. 6:165–185.
   PubMedGoogle Scholar
• Biteen JS, Blainey PC, Cardon ZG, Chun M, Church GM, Dorrestein PC, Fraser SE, Gilbert JA, Jansson JK, Knight R, et al. 2016. Tools for the microbiome: nano and beyond. ACS Nano. 10:6–37.
   PubMed Web of Science ®Google Scholar
• Blattner FR, Plunkett G, III, Bloch CA, Perna NT, Burland V, Riley M, Collado-Vides J, Glasner JD, Rode CK, Mayhew JF, et al. 1997. The complete genome sequence of Escherichia coli K-12. Science. 277:1453–1462.
   PubMed Web of Science ®Google Scholar
• Bossi P, Tegnell A, Baka A, Loock FV, Hendriks J, Werner A, Maidhof H, Gouvras G. 2004. Bichat guidelines for the clinical management of glanders and melioidosis and bioterrorism-related glanders and melioidosis. Euro Surveill. 9:E17–E18.
   PubMedGoogle Scholar
• Breeze RG; Budowle B, Schutzer SE, editors. Microbial Forensics. (2005). ISBN: 0-12-088483-6. Elsevier Academic Press.
   Google Scholar
• Budowle B, Schutzer SE, Einseln A, Kelley LC, Walsh AC, Smith JA, Marrone BL, Robertson J, Campos J. 2003. Public health. Building microbial forensics as a response to bioterrorism. Science. 301:1852–1853.
   PubMed Web of Science ®Google Scholar
• Budowlea B, Johnson MD, Fraserc CM, Leightond TJ, Murche RS, Chakraborty R. 2005. Genetic analysis and attribution of microbial forensics evidence. Crit Rev Microbiol. 31:233–254.
   PubMed Web of Science ®Google Scholar
• Burke DS. 1998. Evolvability of emerging viruses. In: A.M Nelson C.R. Horsburgh editors. Pathology of emerging infections. Washington: American Society for Microbiology; 1–12.
   Google Scholar
• Cangelosi GA, Meschke JS. 2014. Dead or alive: molecular assessment of microbial viability. Appl Environ Microbiol. 80:5884–5891.
   PubMed Web of Science ®Google Scholar
• Carneiro HA, Mylonakis E. 2009. Google trends: a web-based tool for real-time surveillance of disease outbreaks. Clin Infect Dis. 49:1557–1564.
   PubMed Web of Science ®Google Scholar
• Casadevall A, Relman DA. 2010. Microbial threat lists: obstacles in the quest for biosecurity? Nat Rev Microbiol. 8:149–154.
   PubMed Web of Science ®Google Scholar
• CDC. 2000. Biological and chemical terrorism: strategic plan for preparedness and response. Recommendations of the CDC Strategic Planning Workgroup. MMWR Recomm Rep. 49:1.
   Google Scholar
• Chen H, Weiss J, Shahidi F. 2006. Nanotechnology in nutraceuticals and functional foods. Food Technol. 60:30.
   Web of Science ®Google Scholar
• Choi JW, Oh BK. 2008. Optical detection of pathogens using protein chip. In: Kim YJ, Platt U, editors. Advanced environmental monitoring. Seoul, Korea: Springer. p. 348–362.
   Google Scholar
• Christopher GW, Cieslak TJ, Pavlin JA, Eitzen EM. 1997. Biological warfare. A historical perspective. JAMA. 278:412–417.
   PubMed Web of Science ®Google Scholar
• Cleaveland S, Laurenson MK, Taylor LH. 2001. Diseases of humans and their domestic mammals: pathogen characteristics, host range and the risk of emergence. Philos Trans R Soc Lond B Biol Sci. 356:991–999.
   PubMed Web of Science ®Google Scholar
• Cooper MA. 2002. Optical biosensors in drug discovery. Nat Rev Drug Discov. 1:515–528.
   PubMed Web of Science ®Google Scholar
• Dance DAB. 2005. Melioidosis and glanders as possible biological weapons. In: I.W. Fong, A. Kenneth, editors. Bioterrorism and infectious agents: a new dilemma for the 21st century. New York: Springer. 99–145.
   Google Scholar
• Danks C, Barker I. 2000. On-site detection of plant pathogens using lateral-flow devices. EPPO Bull. Bulletin OEPP/EPPO Bulletin. 30:421–426.
   Google Scholar
• Darling AE, Jospin G, Lowe E, Matsen FA, Bik HM, Eisen JA. 2014. PhyloSift: phylogenetic analysis of genomes and metagenomes. Peer J. 2:e243.
   PubMed Web of Science ®Google Scholar
• Davies TJT, Pedersen AB. 2008. Phylogeny and geography predict pathogen community similarity in wild primates and humans. Phylog Proc R Soc B. 275:1695–1701.
   PubMed Web of Science ®Google Scholar
• Davydova A, Vorobjeva M, Pyshnyi D, Altman S, Vlassov V, Venyaminova A. 2016. Aptamers against pathogenic microorganisms. Crit Rev Microbiol. 42:847–865.
   PubMed Web of Science ®Google Scholar
• Derbes VJ. 1996. De Mussis and the great plague of 1348. A forgotten episode of bacteriological warfare. JAMA. 196:59–62.
   Web of Science ®Google Scholar
• Dewey FM, Macdonald MM, Philips SI, Priestley RA. 1990. Development of monoclonal-antibody-ELISA and -DIP-STICK immunoassays for Penicillium islandicum in rice grains. J Gen Microbiol. 136:753–760.
   PubMedGoogle Scholar
• Diba FS, Kim S, Lee HJ. 2015. Amperometric bioaffinity sensing platform for avian influenza virus proteins with aptamer modified gold nanoparticles on carbon chips. Biosens Bioelectron. 75:355–361.
   Google Scholar
• Donaldson KA, Kramer MF, Lim DV. 2004. A rapid detection method for Vaccinia virus, the surrogate for smallpox virus. Biosens Bioelectron. 20:322–327.
   PubMed Web of Science ®Google Scholar
• Dong J, Olano JP, McBride JW, Walker DH. 2008. Emerging pathogens: challenges and successes of molecular diagnostics. J Mol Diagn. 10:185–197.
   PubMed Web of Science ®Google Scholar
• Dudak FC, Boyaci IH. 2009. Rapid and label-free bacteria detection by surface plasmon resonance (SPR) biosensors. Biotech. 4:1003–1011.
   Google Scholar
• Engler KH, Efstratiou A, Norn D, Kozlov RS, Selga I, Glushkevich TG, Tam M, Melnikov VG, Mazurova IK, Kim VE, et al. 2002. Immunochromatographic strip test for rapid detection of diphtheria toxin: description and multicenter evaluation in areas of low and high prevalence of diphtheria. J Clin Microbiol. 40:80–83.
   PubMed Web of Science ®Google Scholar
• Eysenbach G. 2006. Infodemiology: tracking flu-related searches on the web for syndromic surveillance. AMIA Annu Symp Proc. 244–248.
   PubMedGoogle Scholar
• Farrow B, Hong SA, Romero EC, Lai B, Coppock MB, Deyle KM, Finch AS, Stratis-Cullum DN, Agnew HD, Yang S, et al. 2013. A chemically synthesized capture agent enables the selective, sensitive, and robust electrochemical detection of anthrax protective antigen. ACS Nano. 7:9452–9460.
   PubMed Web of Science ®Google Scholar
• Ferguson NM, Cummings DAT, Cauchemez S, Fraser S, Riley S. 2005. Strategies for containing an emerging influenza pandemic in Southeast Asia. Nature. 437:209–214.
   PubMed Web of Science ®Google Scholar
• Fletcher J, Bender C, Budowle B, Cobb WT, Gold SE. 2006. Plant pathogen forensics: capabilities, needs, and recommendations. Microbiol Mol Biol Rev. 70:450–471.
   PubMed Web of Science ®Google Scholar
• Fornaciari A. 2017. Environmental microbial forensics and archaeology of past pandemics. Microbiol Spectr. 5. DOI:10.1128/microbiolspec.EMF-0011-2016.
   PubMed Web of Science ®Google Scholar
• Fournier PE, Dubourg G, Raoult D. 2014. Clinical detection and characterization of bacterial pathogens in the genomics era. Genome Med. 6:114.
   PubMed Web of Science ®Google Scholar
• Frenk J, Gomez-Dantes O. 2002. Globalisation and the challenges to health systems. BMJ. 325:95–97.
   PubMed Web of Science ®Google Scholar
• Friedman CP, Altman RB, Kohane IS, McCormick KA, Miller PL, et al. 2004. Training the next generation of informaticians: the impact of “BISTI” and bioinformatics–a report from the American College of Medical Informatics. J Am Med Informatics Assoc. 11:167–172.
   PubMed Web of Science ®Google Scholar
• Geho DH, Jones CD, Petricoin EF, Liotta LA. 2006. Nanoparticles: potential biomarker harvesters. Curr Opin Chem Biol. 10:56–61.
   PubMed Web of Science ®Google Scholar
• Gilbride KA, Lee DY, Beaudette LA. 2006. Molecular techniques in wastewater: Understanding microbial communities, detecting pathogens, and real-time process control. J Microbiol Methods. 66:1–20.
   PubMed Web of Science ®Google Scholar
• Gilchrist CA, Turner SD, Riley MF, Petri WA Jr, Hewlett EL. 2015. Whole-genome sequencing in outbreak analysis. Clin Microbiol Rev. 28:541–563.
   PubMed Web of Science ®Google Scholar
• Ginsberg J, Mohebbi MH, Patel RS, Brammer L, Smolinski MS, Brilliant L. 2009. Detecting influenza epidemics using search engine query data. Nature. 457:1012–1014.
   PubMed Web of Science ®Google Scholar
• Godoy D, Randle G, Simpson AJ, Aanensen DM, Pitt TL, Kinoshita R, Spratt BG. 2003. Multilocus sequence typing and evolutionary relationships among the causative agents of melioidosis and glanders, Burkholderia pseudomallei and Burkholderia mallei. J Clin Microbiol. 41:2068–2079.
   PubMed Web of Science ®Google Scholar
• Hahn MA, Tabb JS, Krauss TD. 2005. Detection of single bacterial pathogens with semiconductor quantum dots. Anal Chem. 77:4861–4869.
   PubMed Web of Science ®Google Scholar
• Handelsman J, Rondon MR, Brady SF, Clardy J, Goodman RM. 1998. Molecular biological access to the chemistry of unknown soil microbes: a new frontier for natural products. Chem Biol. 5:R245–R249.
   PubMed Web of Science ®Google Scholar
• Harrison JW, Ngoc Dung TT, Siddiqui F, Korbrisate S, Bukhari H, et al. 2014. Identification of possible virulence marker from Campylobacter jejuni isolates. Emerg Infect Dis. 20:1026–1029.
   PubMed Web of Science ®Google Scholar
• Hedberg CW, Besser JM. 2006. Commentary: cluster evaluation, PulseNet, and public health practice. Foodborne Pathog Dis. 3:32–35.
   PubMed Web of Science ®Google Scholar
• Heffernan R, Mostashari Das FD, Karpati A, Kulldorff M, Weiss D. 2004. Syndromic surveillance in public health practice, New York City. Emerging Infect Dis. 10:858–864.
   PubMed Web of Science ®Google Scholar
• Henkel JH, Aberle SW, Kundi M, Popow-Kraupp T. 1997. Improved detection of respiratory syncytial virus in nasal aspirates by seminested RT-PCR. J Med Virol. 53:366–371.
   PubMed Web of Science ®Google Scholar
• Heymann DL, Rodier GR. 2001. Hot spots in a wired world: WHO surveillance of emerging and re-emerging infectious diseases. Lancet Infect Dis. 1:345–353.
   PubMedGoogle Scholar
• Hilleman MR. 2002. Overview: cause and prevention in biowarfare and bioterrorism. Vaccine. 20:3055–3067.
   PubMed Web of Science ®Google Scholar
• Ilic B, Yang Y, Craighead HG. 2004. Virus detection using nanoelectromechanical devices. Appl Phys Lett. 85:2604–2606.
   Web of Science ®Google Scholar
• Ivnitski D, Abdel-Hamid I, Atanasov P, Wilkins E. 1999. Biosensors for detection of pathogenic bacteria. Biosens. Bioelectron. 14:599–524.
   Web of Science ®Google Scholar
• Jain KK. 2005. Nanotechnology in clinical laboratory diagnostics. Clin Chim Acta. 358:37–54.
   PubMed Web of Science ®Google Scholar
• Jain KK. 2007. Applications of nanobiotechnology in clinical diagnostics. Clin Chem. 53:2002–2009.
   PubMed Web of Science ®Google Scholar
• Johnson CJ, Zhukovsky N, Cass AE, Nagy JM. 2008. Proteomics, nanotechnology and molecular diagnostics. Proteomics. 8:715–730.
   PubMed Web of Science ®Google Scholar
• Jung YL, Jung C, Parab H, Li T, Park HG. 2010. Direct colorimetric diagnosis of pathogen infections by utilizing thiol-labeled PCR primers and unmodified gold nanoparticles. Biosens Bioelectron. 25:1941–1946.
   PubMed Web of Science ®Google Scholar
• Kaittanis C, Nath S, Perez JM. 2008. Rapid nanoparticle-mediated monitoring of bacterial metabolic activity and assessment of antimicrobial susceptibility in blood with magnetic relaxation. PLoS One. 23:e3253.
   Google Scholar
• Keddy KH, Sooka A, Parsons MB, Njanpop-Lafourcade BM, Fitchet K, Smith AM. 2013. Diagnosis of Vibrio cholerae O1 Infection in Africa. J Infect Dis. 208:23–31.
   Web of Science ®Google Scholar
• Kim YP, Kim HS. 2016. Nanoparticles for use in enzyme assays. Chembiochem. 17:275–282.
   PubMed Web of Science ®Google Scholar
• Kuiper I. 2016. Microbial forensics: next-generation sequencing as catalyst: the use of new sequencing technologies to analyze whole microbial communities could become a powerful tool for forensic and criminal investigations. EMBO Rep. 17:1085–1087.
   PubMedGoogle Scholar
• Kuznetsov YG, Daijogo S, Zhou J, Semler BL, McPherson A. 2005. Atomic force microscopy analysis of icosahedral virus RNA. J Mol Biol. 347:41–52.
   PubMed Web of Science ®Google Scholar
• Lagier J-C, Million M, Hugon P, Armougom F, Raoult D. 2012. Human gut microbiota: repertoire and variations. Front Cell Infect Microbiol. 2:136. DOI:10.3389/fcimb.2012.00136
   PubMed Web of Science ®Google Scholar
• Land M, Hauser L, Jun SR, Nookaew I, Leuze MR, Ahn TH, Karpinets T, Lund O, Kora G, Wassenaar T, et al. 2015. Insights from 20 years of bacterial genome sequencing. Funct Integr Genomics. 15:141–161.
   PubMed Web of Science ®Google Scholar
• Lane CR, Hobden E, Walker L, Barton VC, Inman AJ, Hughes KJD, Swan H, Colyer A, Barker I, et al. 2007. Evaluation of a rapid diagnostic field test kit for identification of Phytophthora species, including P. ramorum and P. kernoviae at the point of inspection. Plant Pathol. 56:828–835.
   Web of Science ®Google Scholar
• Lax S, Hampton-Marcell JT, Gibbons SM, Colares GB, Smith D, Eisen JA, Gilbert JA. 2015. Forensic analysis of the microbiome of phones and shoes. Microbiome. 3:21.
   PubMed Web of Science ®Google Scholar
• Layne SP, Beugelsdijk TJ. 1998. Laboratory firepower for infectious disease research. Nat Biotechnol. 16:825–829.
   PubMed Web of Science ®Google Scholar
• Leitenberg M. 2001. Biological weapons in the twentieth century: a review and analysis. Crit Rev Microbiol. 27:267–220.
   PubMed Web of Science ®Google Scholar
• Li C, Zhang P, Wang X, Liu X, Zhao Y, Sun C, Wang C, Yang R, Zhou L. 2015. Development and comparative evaluation of up-converting phosphor technology based lateral flow assay for rapid detection of Yersinia pestis, Bacillus anthracis spore and Brucella spp. Zhonghua Yu Fang Yi Xue Za Zhi. 49:3–8.
   PubMedGoogle Scholar
• Longini IM Jr, Nizam A, Xu S, Ungchusak K, Hanshaoworakul W, Cummings DAT, Halloran ME. 2005. Containing pandemic influenza at the source. Science. 309:1083–1087.
   PubMed Web of Science ®Google Scholar
• Mandl KD, Overhage JM, Wagner MM, Lober WB, Sebastiani P, Mostashari F, Pavlin JA, Gesteland PH, Treadwell T, Koski E, et al. 2004. Implementing syndromic surveillance: a practical guide informed by the early experience. J Am Med Inform Assoc. 11:141–150.
   PubMed Web of Science ®Google Scholar
• Mathusa EC, Yuhuan C, Elena E, Lloyd H. 2010. Non-O157 shiga toxin-producing Escherichia coli in foods. J Food Prot. 73:1721–1736.
   PubMed Web of Science ®Google Scholar
• McEwen SA, Wilson TM, Ashford DA, Heegaard ED, Kournikakis B. 2006. Microbial forensics for natural and intentional incidents of infectious disease involving animals. Rev - off Int Epizoot. 25:329–339.
   PubMed Web of Science ®Google Scholar
• MMWR 2010. Update: outbreak of cholera —Haiti. MMWR Morbidity and Mortality Weekly Report. 59:1586–1590.
   PubMedGoogle Scholar
• Morelli G, Song Y, Mazzoni CJ, Eppinger M, Roumagnac P, Wagner DM, Feldkamp M, Kusecek B, Volger AJ, Li Y, et al. 2010. Phylogenetic diversity and historical patterns of pandemic spread of Yersinia pestis. Nat Genet. 42:1140–1143.
   PubMed Web of Science ®Google Scholar
• Morens DM, Fauci AS. 2013. Emerging Infectious Diseases: Threats to Human Health and Global Stability. PLoS Pathog. 9:e1003467.
   PubMed Web of Science ®Google Scholar
• Mukherjee S, Stamatis D, Bertsch J, Ovchinnikova G, Verezemska O, Isbandi M, Thomas AD, Ali R, Sharma K, Kyrpides NC, et al. 2017. Genomes OnLine Database (GOLD) v.6: data updates and feature enhancements. Nucl. Acids Res. 45:D446–D456.
   PubMed Web of Science ®Google Scholar
• Murch RS. 2004. Microbial forensics: building a national capacity to investigate bioterrorism. Biosec Bioterror Biodefense Strat Pract Sci. 1:117–122.
   Google Scholar
• National Electronic Disease Surveillance System Working Group. 2001. National Electronic Disease Surveillance System (NEDSS): a standards-based approach to connect public health and clinical medicine. J Public Health Manag Pract. 7:43–50.
   PubMedGoogle Scholar
• New York Times. Google uses searches to track flu’s spread. 2008. http://www.nytimes.com/2008/11/12/technology/internet/12flu.html?_rp1
   Google Scholar
• O’Connor MJ, Buckeridge DL, Choy M, Crubezy M, Pincus Z, Musen MA. 2003. BioSTORM: a system for automated surveillance of diverse data sources. AMIA Annu Symp Proc. 1071.
   PubMedGoogle Scholar
• Olano JP, Walker DH. 2011. Diagnosing emerging and reemerging infectious diseases: the pivotal role of the pathologist. Arch Pathol Lab Med. 135:83–91.
   PubMed Web of Science ®Google Scholar
• O’Shea MK, Ryan MAK, Hawksworth AW, Alsip BJ, Gray GC. 2005. Symptomatic respiratory syncytial virus infection in previously healthy young adults living in a crowded military environment. Clin Infect Dis. 41:311–317.
   PubMed Web of Science ®Google Scholar
• Overbeek R, Begley T, Butler RM, Choudhuri JV, Chuang HY, Cohoon M, et al. 2005. The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes. Nucleic Acids Res. 33:5691–5702.
   PubMed Web of Science ®Google Scholar
• Pace NR, Stahl DA, Lane DJ, Olsen GJ. 1985. Analyzing natural 528 microbial populations by rRNA sequences. ASM News. 51:4–12.
   Google Scholar
• Page AL, Alberti KP, Mondonge V, Rauzier Quilici MJ, Guerin PJ. 2012. Evaluation of a rapid test for the diagnosis of cholera in the absence of a gold standard. PLoS One. 7:1–7.
   Web of Science ®Google Scholar
• Peng F, Wang Z, Zhang S, Wu R, Hu S, Li Z, Wang X, Bi D. 2008. Portable chemical sensors: weapons against bioterrorism. Clin Vaccine Immunol. 15:567.
   Google Scholar
• Piarroux R, Frerichs RR. 2015. Cholera and blame in Haiti. Lancet Infect Dis. 15:1380–1381.
   PubMed Web of Science ®Google Scholar
• Polgreen PM, Chen Y, Pennock DM, Nelson FD, Weinstein RA. 2008. Using internet searches for influenza surveillance. Clin Infect Dis. 47:1443–1448.
   PubMed Web of Science ®Google Scholar
• Radwan SH, Azzazy HM. 2009. Gold nanoparticles for molecular diagnostics. Expert Rev Mol Diagn. 9:511–524.
   PubMed Web of Science ®Google Scholar
• Rappuoli R. 2004. From Pasteur to genomics: progress and challenges in infectious diseases. Nat Med. 10:1177–1185.
   PubMed Web of Science ®Google Scholar
• Reznickova A, Novotna Z, Kvitek O, Kolska Z, Svorcik V. 2015. Gold, silver and carbon nanoparticles grafted on activated polymers for biomedical applications. J Nanosci Nanotechnol. 15:10053–10073.
   PubMed Web of Science ®Google Scholar
• Ross SA, Srinivas PR, Clifford AJ, Lee SC, Philbert MA, Hettich RL. 2004. New technologies for nutrition research. J Nutr. 134:681–685.
   PubMed Web of Science ®Google Scholar
• Rotz LD, Khan AS, Lillibridge SR, Ostroff SM, Hughes JM. 2002. Public health assessment of potential biological terrorism agents. Emerging Infect Dis. 8:225–230.
   PubMed Web of Science ®Google Scholar
• Sajid M, Kawde AN, Daud M. 2015. Designs, formats and applications of lateral flow assay: a literature review. J Saudi Chem Soc. 19:689–705.
   Web of Science ®Google Scholar
• Salter SJ, Cox MJ, Turek EM, Calus ST, Cookson WO, Moffatt MF, Turner P, Parkhill J, Loman NJ, Walker AW. 2014. Reagent and laboratory contamination can critically impact sequence-based microbiome analyses. BMC Biol. 12:87.
   PubMed Web of Science ®Google Scholar
• Schmidt TM, De Long EF, Pace NR. 1991. Analysis of a marine picoplankton community by 16S rRNA gene cloning and sequencing. J Bacteriol. 173:4371–4378.
   PubMed Web of Science ®Google Scholar
• Schutzer SE, Budowle B, Atlas RM. 2005. Biocrimes, microbial forensics, and the physician. PLoS Med. 2:e337.
   PubMed Web of Science ®Google Scholar
• Shah MA, Mutreja A, Thomson N, Baker S, Parkhill J, Dougan G, Bokhari H, Wren BW. 2014. Genomic epidemiology of Vibrio cholerae O1 associated with Floods, Pakistan, 2010. Emerging Infect Dis. 20:13–20.
   PubMed Web of Science ®Google Scholar
• Shim WB, Yang ZY, Kim JS, Kim JY, Kang SJ, Woo GJ, Chung YC, Eremin SA, Chung DH. 2007. Development of immunochromatography strip-test using nanocolloidal gold-antibody probe for the rapid detection of Aflatoxin B1 in grain and feed samples. J Microbiol Biotechnol. 17:1629–1637.
   PubMed Web of Science ®Google Scholar
• Siddiqui F, Eqani SAMAS, Studholme DJ, Champion OL, Wren BW, Titball RW, Bokhari H. 2015. Molecular detection identified a type six secretion system in Campylobacter jejuni from various sources but not from human cases. J Appl Microbiol. 118:1191–1198.
   PubMed Web of Science ®Google Scholar
• Sinclair R, Boone SA, Greenberg D, Keim P, Gerba CP. 2008. Persistence of category A select agents in the environment. Appl Environ Microbiol. 74:555–563.
   PubMed Web of Science ®Google Scholar
• Singh J, Sharma S, Nara S. 2015. Evaluation of gold nanoparticle based lateral flow assays for diagnosis of enterobacteriaceae members in food and water. Food Chem. 170:470–483.
   PubMed Web of Science ®Google Scholar
• Sithigorngul P, Rukpratanporn S, Pecharaburanin N, Suksawat P, Longyant S, Chaivisuthangkur P, Sithigorngul W. 2007. A simple and rapid immunochromatographic test strip for detection of pathogenic isolates of Vibrio harveyi. Microbiol Methods. 71:256–264.
   PubMed Web of Science ®Google Scholar
• Stephen IB, Chen BH. 2016. Nanomaterial-based sensors for detection of foodborne bacterial pathogens and toxins as well as pork adulteration in meat products. J Food Drug Anal. 24:15–28.
   PubMed Web of Science ®Google Scholar
• Syed MA, Bhatti AS, Li C, Bokhari H. 2011. Use of SPR biosensor for the study of proteolytic action of a serine protease enzyme. Am J Biomed Sci. 3:253–257.
   Google Scholar
• Syed MA, Bukhari SH. 2011. Gold nanoparticle based microbial detection and identification. J Biomed Nanotechnol. 7:229–237.
   PubMed Web of Science ®Google Scholar
• Taniguchi N. 1974. On the basic concept of nano-technology. Proc Intl Conf Prod Eng. Tokyo, Japan, Part II: Japan Society of Precision Engineering
   Google Scholar
• Tian ZQ, Ren B, Wu DY. 2002. Surface-enhanced raman scattering: from noble to transition metals and from rough surfaces to ordered nanostructures. J Phys Chem B. 106:9463–9483.
   Web of Science ®Google Scholar
• Trujillo E, Davis C, Milner J. 2006. Nutrigenomics, proteomics, metabolomics, and the practice of dietetics. J Am Diet Assoc. 106:403–413.
   PubMed Web of Science ®Google Scholar
• Urwin R, Maiden MC. 2003. Multi-locus sequence typing: a tool for global epidemiology. Trends Microbiol. 11:479–487.
   PubMed Web of Science ®Google Scholar
• van Belkum A, Tassios P, Dijkshoorn L, Haeggman S, et al. 2007. Guidelines for the validation and application of typing methods for use in bacterial epidemiology. Clin Microbiol Infect. 13:1–46.
   PubMed Web of Science ®Google Scholar
• van Boheemen S, de Graaf M, Lauber C, Bestebroer TM, Raj VS, Zaki AM, Osterhaus ADME, Haagmans BL, Gorbalenya AE, Snijder EJ, et al. 2012. Genome characterization of a newly discovered coronavirus associated with acute respiratory distress syndrome in humans. MBio. 3:e00473–e00412.
   PubMed Web of Science ®Google Scholar
• Veigas B, Fernandes AR, Baptista PV. 2014. AuNPs for identification of molecular signatures of resistance. Front Microbiol. 5:455.
   PubMed Web of Science ®Google Scholar
• Veigas B, Machado D, Perdigão J, Portugal I, Couto I, Viveiros M, Baptista PV. 2010. Au-nanoprobes for detection of SNPs associated with antibiotic resistance in Mycobacterium tuberculosis. Nanotechnology. 21:415101.
   PubMed Web of Science ®Google Scholar
• Vorou RM, Papavassiliou VG, Tsiodras S. 2007. Emerging zoonoses and vector-borne infections affecting humans in Europe. Epidemiol Infect. 135:1231–1247.
   PubMed Web of Science ®Google Scholar
• Waag DM, DeShazer D. 2004. Glanders: new insights into an old dis ease. In: Lindler LE, Lebeda FJ, Korch GW, editors. Biological weapons defense: infectious diseases and counter bioterrorism. Totowa, NJ: Humana Press; 209.
   Google Scholar
• Wagner V, Dullaart A, Bock AK, Zweck A. 2006. The emerging nanomedicine landscape. Nat Biotechnol. 24:1211–1217.
   PubMed Web of Science ®Google Scholar
• Watson JD, Crick FH. 1953. Molecular structure of nucleic acids; a structure for deoxyribose nucleic acid. Nature. 171:737–738.
   PubMed Web of Science ®Google Scholar
• Weiss RA. 2001. The Leeuwenhoek Lecture 2001. Animal origins of human infectious disease. Philos Trans R Soc Lond B Biol Sci. 356:957–977.
   PubMed Web of Science ®Google Scholar
• Wolfe ND, Dunavan CP, Diamond J. 2007. Origins of major human infectious diseases. Nature. 447:279–283.
   PubMed Web of Science ®Google Scholar
• Woolhouse M, Gaunt E. 2007. Ecological origins of novel human pathogens. Crit Rev Microbiol. 33:231–242.
   PubMed Web of Science ®Google Scholar
• Woolhouse MEJ, Haydon DT, Antia R. 2005. Emerging pathogens: the epidemiology and evolution of species jumps. Trends Ecol Evol. 20:238–244.
   PubMed Web of Science ®Google Scholar
• Woolhouse MEJ, Sequeria SG. 2005. Host range and emerging and reemerging pathogens. Emerging Infect Dis. 11:1842–1847.
   PubMed Web of Science ®Google Scholar
• Zheng MZ, Richard JL, Binder J. 2006. A review of rapid methods for the analysis of mycotoxins. Mycopathologia. 161:261–273.
   PubMed Web of Science ®Google Scholar
• Zheng YZ, Hyatt A, Wang LF, Eaton BT, Greenfield PF, Reid S. 1999. Quantification of recombinant core-like particles of bluetongue virus using immunosorbent electron microscopy. J Virol Methods. 80:1–9.
   PubMed Web of Science ®Google Scholar