Advances on diagnosis of Helicobacter pylori infections

References

• Akashi T, Isomoto H, Matsushima K, Kamiya M, Kanda T, Nakano M, Onoyama T, Fujii M, Akada J, Akazawa Y, et al. 2019. A novel method for rapid detection of a Helicobacter pylori infection using a γ-glutamyltranspeptidase-activatable fluorescent probe. Sci Rep. 9(1):9.
   PubMedGoogle Scholar
• Ali MM, Wolfe M, Tram K, Gu J, Filipe CDM, Li Y, Brennan JD. 2019. A DNAzyme‐based colorimetric paper sensor for Helicobacter pylori. Angew Chem Int Ed Engl. 58(29):9907–9911.
   PubMed Web of Science ®Google Scholar
• Alzoubi H, Al-Mnayyis A, Al rfoa I, Aqel A, Abu-Lubad M, Hamdan O, Jaber K. 2020. The use of 13C-urea breath test for non-invasive diagnosis of Helicobacter pylori infection in comparison to endoscopy and stool antigen test. Diagnostics. 10(7):448.
   Web of Science ®Google Scholar
• Amann R, Fuchs BM. 2008. Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques. Nat Rev Microbiol. 6(5):339–348.
   PubMed Web of Science ®Google Scholar
• Bakhtiari S, Hasanvand B, Pajavand H, Alvandi A, Abiri R. 2019. Rapid and accurate detection of Helicobacter pylori from biopsy specimens using loop‐mediated isothermal amplification. APMIS. 127(7):510–514.
   PubMed Web of Science ®Google Scholar
• Bang CS, Lee JJ, Baik GH. 2020. Artificial intelligence for the prediction of Helicobacter pylori infection in endoscopic images: systematic review and meta-analysis of diagnostic test accuracy. J Med Internet Res. 22(9):e21983.
   PubMed Web of Science ®Google Scholar
• Barbeiro S, Libânio D, Castro R, DInis-Ribeiro M, Pimentel-Nunes P. 2018. Narrow-band imaging: clinical application in gastrointestinal endoscopy. GE Port J Gastroenterol. 26(1):40–53.
   PubMedGoogle Scholar
• Beckman E, Saracino I, Fiorini G, Clark C, Slepnev V, Patel D, Gomez C, Ponaka R, Elagin V, Vaira D. 2017. A novel stool PCR test for Helicobacter pylori may predict clarithromycin resistance and eradication of infection at a high rate. J Clin Microbiol. 55(8):2400–2405.
   PubMed Web of Science ®Google Scholar
• Best LMJ, Takwoingi Y, Siddique S, Selladurai A, Gandhi A, Low B, Yaghoobi M, Gurusamy KS. 2018. Non-invasive diagnostic tests for Helicobacter pylori infection. Cochrane Database Syst Rev. 3(3):CD012080.
   PubMedGoogle Scholar
• Bordin DS, Voynovan IN, Andreev DN, Maev IV. 2021. Current Helicobacter pylori diagnostics. Diagnostics. 11(8):1458.
   Web of Science ®Google Scholar
• Braden B. 2012. Diagnosis of Helicobacter pylori infection. BMJ. 344(1):e828–e828.
   PubMedGoogle Scholar
• Braun P, Wolfschläger I, Reetz L, Bachstein L, Jacinto AC, Tocantins C, Poppe J, Grass G. 2020. Rapid microscopic detection of Bacillus anthracis by fluorescent receptor binding proteins of bacteriophages. Microorganisms. 8(6):934–921.
   PubMed Web of Science ®Google Scholar
• Brennan DE, Omorogbe J, Hussey M, Tighe D, Holleran G, O’morain C, Smith SM, Mcnamara D. 2016. Molecular detection of Helicobacter pylori antibiotic resistance in stool vs biopsy samples. World J Gastroenterol. 22(41):9214–9221.
   PubMed Web of Science ®Google Scholar
• Burucoa C, Delchier JC, Courillon-Mallet A, de Korwin JD, Mégraud F, Zerbib F, Raymond J, Fauchère JL. 2013. Comparative evaluation of 29 commercial Helicobacter pylori serological kits. Helicobacter. 18(3):169–179.
   PubMed Web of Science ®Google Scholar
• Butt J, Blot WJ, Shrubsole MJ, Varga MG, Hendrix LH, Crankshaw S, Waterboer T, Pawlita M, Epplein M. 2020. Performance of multiplex serology in discriminating active vs past Helicobacter pylori infection in a primarily African American population in the southeastern United States. Helicobacter. 25(1):e12671.
   PubMed Web of Science ®Google Scholar
• Camargo MC, Beltran M, Conde-Glez CJ, Harris PR, Michel A, Waterboer T, Carolina Flõrez A, Torres J, Ferreccio C, Sampson JN, et al. 2015. Serological response to Helicobacter pylori infection among Latin American populations with contrasting risks of gastric cancer. Int J Cancer. 137(12):3000–3005.
   PubMed Web of Science ®Google Scholar
• Celik C, Can Sezgin G, Kocabas UG, Gursoy S, Ildiz N, Tan W, Ocsoy I. 2021. Novel anthocyanin-based colorimetric assay for the rapid, sensitive, and quantitative detection of Helicobacter pylori. Anal Chem. 93(15):6246–6253.
   PubMed Web of Science ®Google Scholar
• Cerqueira L, Fernandes RM, Ferreira RM, Carneiro F, Dinis-Ribeiro M, Figueiredo C, Keevil CW, Azevedo NF, Vieira MJ. 2011. PNA-FISH as a new diagnostic method for the determination of clarithromycin resistance of Helicobacter pylori. BMC Microbiol. 11:101.
   PubMed Web of Science ®Google Scholar
• Cerqueira L, Fernandes RM, Ferreira RM, Oleastro M, Carneiro F, Brandão C, Pimentel-Nunes P, Dinis-Ribeiro M, Figueiredo C, Keevil CW, et al. 2013. Validation of a fluorescence in situ hybridization method using peptide nucleic acid probes for detection of Helicobacter pylori clarithromycin resistance in gastric biopsy specimens. J Clin Microbiol. 51(6):1887–1893.
   PubMed Web of Science ®Google Scholar
• Chao CY, Wang CH, Che YJ, Kao CY, Wu JJ, Lee GB. 2016. An integrated microfluidic system for diagnosis of the resistance of Helicobacter pylori to quinolone-based antibiotics. Biosens Bioelectron. 78:281–289.
   PubMed Web of Science ®Google Scholar
• Chen J, Ye L, Jin L, Xu X, Xu P, Wang X, Li H. 2018. Application of next-generation sequencing to characterize novel mutations in clarithromycin-susceptible Helicobacter pylori strains with A2143G of 23S rRNA gene. Ann Clin Microbiol Antimicrob. 17(1):10.
   PubMedGoogle Scholar
• Chen L, Li X, Zou T, Wang T, Cui X, Chen Y, Zhang C, Zhao S. 2019. Ultrasensitive detection of H. pylori in human feces based on immunomagnetic bead capture and fluorescent quantum dots. Analyst. 144(13):4086–4092.
   PubMed Web of Science ®Google Scholar
• Chen L-L, Cui H-F, Fan S-F, Li Z-Y, Han S-Y, Ma X, Luo S-W, Song X, Lv Y. 2018. Detection of Helicobacter pylori in dental plaque using a DNA biosensor for noninvasive diagnosis. RSC Adv. 8(38):21075–21083.
   PubMed Web of Science ®Google Scholar
• Chey WD, Leontiadis GI, Howden CW, Moss SF. 2017. ACG clinical guideline: treatment of Helicobacter pylori infection. Am J Gastroenterol. 112(2):212–239.
   PubMed Web of Science ®Google Scholar
• Coelho LGV, Trindade OR, Leão LA, Ribeiro HG, Freitas IS, Coelho MCF. 2019. Prospective study for validation of a single protocol for the 13C-urea breath test using two different devices in the diagnosis of H. Pylori infection. Arq Gastroenterol. 56(2):197–201.
   PubMedGoogle Scholar
• Cui HF, Xu TB, Sun YL, Zhou AW, Cui YH, Liu W, Luong JHT. 2015. Hairpin DNA as a biobarcode modified on gold nanoparticles for electrochemical DNA detection. Anal Chem. 87(2):1358–1365.
   PubMed Web of Science ®Google Scholar
• Dechant FX, Dechant R, Kandulski A, Selgrad M, Weber F, Reischl U, Wilczek W, Mueller M, Weigand K. 2020. Accuracy of different rapid urease tests in comparison with histopathology in patients with endoscopic signs of gastritis. Digestion. 101(2):184–190.
   PubMed Web of Science ®Google Scholar
• Demiray-Gürbüz E, Yılmaz Ö, Olivares AZ, Gönen C, Sarıoğlu S, Soytürk M, Tümer S, Altungöz O, Şimşek İ, Perez Perez GI. 2017. Rapid identification of Helicobacter pylori and assessment of clarithromycin susceptibility from clinical specimens using FISH. J Pathol Clin Res. 3(1):29–37.
   PubMedGoogle Scholar
• Deng L, He XY, Tang B, Xiang Y, Yue JJ. 2020. An improved quantitative real-time polymerase chain reaction technology for Helicobacter pylori detection in stomach tissue and its application value in clinical precision testing. BMC Biotechnol. 20(1):1–9.
   PubMed Web of Science ®Google Scholar
• Denyes JM, Dunne M, Steiner S, Mittelviefhaus M, Weiss A, Schmidt H, Klumpp J, Loessner MJ. 2017. Modified bacteriophage S16 long tail fiber proteins for rapid and specific immobilization and detection of Salmonella cells. Appl Environ Microbiol. 83(12):17.
   Web of Science ®Google Scholar
• Dolak W, Bilgilier C, Stadlmann A, Leiner J, Püspök A, Plieschnegger W, Siebert F, Wewalka F, Schöfl R, Huber-Schönauer U. et al. 2017. A multicenter prospective study on the diagnostic performance of a new liquid rapid urease test for the diagnosis of Helicobacter pylori infection. Gut Pathog. 9:78.
   PubMed Web of Science ®Google Scholar
• Fan CC, Chen CH, Chou C, Kao TY, Cheng AN, Lee AYL, Kuo CL. 2020. A time-saving–modified Giemsa stain is a better diagnostic method of Helicobacter pylori infection compared with the rapid urease test. J Clin Lab Anal. 34(4):34.
   Web of Science ®Google Scholar
• Fernandes E, Martins VC, Nóbrega C, Carvalho CM, Cardoso FA, Cardoso S, Dias J, Deng D, Kluskens LD, Freitas PP, et al. 2014. A bacteriophage detection tool for viability assessment of Salmonella cells. Biosens Bioelectron. 52:239–246.
   PubMed Web of Science ®Google Scholar
• Fontenete S, Guimarães N, Leite M, Figueiredo C, Wengel J, Azevedo NF. 2013. Hybridization-based detection of Helicobacter pylori at human body temperature using advanced Locked Nucleic Acid (LNA) probes. PLoS One. 8(11):e81230.
   PubMed Web of Science ®Google Scholar
• Fontenete S, Leite M, Cappoen D, Santos R, Ginneken CV, Figueiredo C, Wengel J, Cos P, Azevedo NF. 2016. Fluorescence in vivo hybridization (FIVH) for detection of Helicobacter pylori infection in a C57BL/6 mouse model. PLoS One. 11(2):e0148353.
   PubMed Web of Science ®Google Scholar
• Fontenete S, Leite M, Guimarães N, Madureira P, Ferreira RM, Figueiredo C, Wengel J, Azevedo NF. 2015. Towards Fluorescence In Vivo Hybridization (FIVH) Detection of H. pylori in Gastric Mucosa Using Advanced LNA Probes. PLoS One. 10(4):e0125494.
   PubMed Web of Science ®Google Scholar
• Gantuya B, El Serag HB, Saruuljavkhlan B, Azzaya D, Matsumoto T, Uchida T, Oyuntsetseg K, Oyunbileg N, Davaadorj D, Yamaoka Y. 2021. Advantage of 16S rRNA amplicon sequencing in Helicobacter pylori diagnosis. Helicobacter. 26(3):e2790.
   Web of Science ®Google Scholar
• Glover B, Teare J, Ashrafian H, Patel N. 2020. The endoscopic predictors of Helicobacter pylori status: a meta-analysis of diagnostic performance. Ther Adv Gastrointest Endosc. 13:2631774520950840.
   Web of Science ®Google Scholar
• Gong EJ, Ahn JY, Jung DK, Lee SM, Pih GY, Kim GH, Na HK, Lee JH, Jung HY, Kim JM. 2020. Isolation of Helicobacter pylori using leftover tissue in the rapid urease test kit. Helicobacter. 25(5):e12733.
   PubMed Web of Science ®Google Scholar
• Gorgannezhad L, Stratton H, Nguyen NT. 2019. Microfluidic-based nucleic acid amplification systems in microbiology. Micromachines. 10(6):408.
   PubMed Web of Science ®Google Scholar
• Graham DY, Miftahussurur M. 2018. Helicobacter pylori urease for diagnosis of Helicobacter pylori infection: a mini review. J Adv Res. 13:51–57.
   PubMed Web of Science ®Google Scholar
• Gray SF, Wyatt JI, Rathbone BJ. 1986. Simplified techniques for identifying Campylpbacter pyloridis. J Clin Pathol. 39(11):1279.
   PubMed Web of Science ®Google Scholar
• Guarner J, Kalach N, Elitsur Y, Koletzko S. 2010. Helicobacter pylori diagnostic tests in children: review of the literature from 1999 to 2009. Eur J Pediatr. 169(1):15–25.
   PubMed Web of Science ®Google Scholar
• Guevara B, Cogdill AG. 2020. Helicobacter pylori: a review of current diagnostic and management strategies. Dig Dis Sci. 65(7):1917–1931.
   PubMed Web of Science ®Google Scholar
• Gupta S, Jain U, Murti BT, Putri AD, Tiwari A, Chauhan N. 2020. Nanohybrid-based immunosensor prepared for Helicobacter pylori BabA antigen detection through immobilized antibody assembly with @ Pdnano/rGO/PEDOT sensing platform. Sci Rep. 10(1):21217.
   PubMed Web of Science ®Google Scholar
• Hajihosseini S, Nasirizadeh N, Hejazi MS, Yaghmaei P. 2016a. A sensitive DNA biosensor fabricated from gold nanoparticles and graphene oxide on a glassy carbon electrode. Mater Sci Eng C Mater Biol Appl. 61:506–515.
   PubMed Web of Science ®Google Scholar
• Hajihosseini S, Nasirizadeh N, Hejazi MS, Yaghmaei P. 2016b. An electrochemical DNA biosensor based on Oracet Blue as a label for detection of Helicobacter pylori. Int J Biol Macromol. 91:911–917.
   PubMed Web of Science ®Google Scholar
• Halland M, Haque R, Langhorst J, Boone JH, Petri WA. 2021. Clinical performance of the H. PYLORI QUIK CHEKTM and H. PYLORI CHEKTM assays, novel stool antigen tests for diagnosis of Helicobacter pylori. Eur J Clin Microbiol Infect Dis. 40(5):1023–1028.
   PubMed Web of Science ®Google Scholar
• Han Y, Dai W, Meng F, Gan X, Liu M, Deng X, Li Y, Wang G. 2020. Diagnosis of Helicobacter pylori infection in the elderly using an immunochromatographic assay‐based stool antigen test. Microbiologyopen. 9(9):e1102.
   PubMedGoogle Scholar
• Hasegawa Y, Welch JLM, Rossetti BJ, Borisy GG. 2017. Preservation of three-dimensional spatial structure in the gut microbiome. PLoS One. 12(11):e0188257.
   PubMed Web of Science ®Google Scholar
• Hays C, Delerue T, Lamarque D, Burucoa C, Collobert G, Billöet A, Kalach N, Raymond J. 2019. Molecular diagnosis of Helicobacter pylori infection in gastric biopsies: evaluation of the Amplidiag ® H. pylori + ClariR assay. Helicobacter. 24(2):e12560.
   PubMed Web of Science ®Google Scholar
• Hooi JKY, Lai WY, Ng WK, Suen MMY, Underwood FE, Tanyingoh D, Malfertheiner P, Graham DY, Wong VWS, Wu JCY, et al. 2017. Global prevalence of Helicobacter pylori infection: systematic review and meta-analysis. Gastroenterology. 153(2):420–429.
   PubMed Web of Science ®Google Scholar
• Hyeon SH, Lim WK, Shin HJ. 2021. Novel surface plasmon resonance biosensor that uses full-length Det7 phage tail protein for rapid and selective detection of Salmonella enterica serovar Typhimurium. Biotechnol Appl Biochem. 68(1):5–12.
   PubMed Web of Science ®Google Scholar
• Jiang Z, Nong B, Liang L, Yan Y, Zhang G. 2019. Differential diagnosis of Helicobacter pylori-associated gastritis with the linked-color imaging score. Dig Liver Dis. 51(12):1665–1670.
   PubMedGoogle Scholar
• Kakiuchi T, Okuda M, Hashiguchi K, Imamura I, Nakayama A, Matsuo M. 2019. Evaluation of a novel stool antigen rapid test kit for detection of Helicobacter pylori infection. J Clin Microbiol. 57(3):18.
   Web of Science ®Google Scholar
• Kearney DJ, Hubbard T, Putnam D. 2002. Breath ammonia measurement in Helicobacter pylori infection. Dig Dis Sci. 47(11):2523–2530.
   PubMed Web of Science ®Google Scholar
• Khalilpour A, Kazemzadeh-Narbat M, Tamayol A, Oklu R, Khademhosseini A. 2016. Biomarkers and diagnostic tools for detection of Helicobacter pylori. Appl Microbiol Biotechnol. 100(11):4723–4734.
   PubMed Web of Science ®Google Scholar
• Kiesslich R. 2021. Diagnostic value of endomicroscopy for gastrointestinal diseases: new possibilities and concepts. Tech Innov Gastrointest Endosc. 23(1):57–68.
   Google Scholar
• Kim SE. 2019. Is a citric acid meal useful for increasing accuracy of the 13C-Urea breath test in asian populations? Gut Liver. 13(5):479–480.
   PubMed Web of Science ®Google Scholar
• Kunstmann S, Scheidt T, Buchwald S, Helm A, Mulard LA, Fruth A, Barbirz S. 2018. Bacteriophage Sf6 tailspike protein for detection of Shigella flexneri pathogens. Viruses. 10(8):431.
   PubMed Web of Science ®Google Scholar
• Kushch I, Korenev N, Kamarchuk L, Pospelov A, Kravchenko A, Bajenov L, Kabulov M, Amann A, Kamarchuk G. 2015. On the importance of developing a new generation of breath tests for Helicobacter pylori detection. J Breath Res. 9:47111.
   PubMed Web of Science ®Google Scholar
• Kwon YH. 2016. Urea breath test. In Helicobacter pylori. Singapore: Springer Singapore; p. 135–143.
   Google Scholar
• Leal YA, Cedillo-Rivera R, Simón JA, Velázquez JR, Flores LL, Torres J. 2011. Utility of stool sample-based tests for the diagnosis of Helicobacter pylori infection in children. J Pediatr Gastroenterol Nutr. 52(6):718–728.
   PubMed Web of Science ®Google Scholar
• Leal YA, Flores LL, Fuentes-Pananá EM, Cedillo-Rivera R, Torres J. 2011. 13C-urea breath test for the diagnosis of Helicobacter pylori infection in children: a systematic review and meta-analysis. Helicobacter. 16(4):327–337.
   PubMed Web of Science ®Google Scholar
• Lee JY, Kim N. 2015. Diagnosis of Helicobacter pylori by invasive test: histology. Ann Transl Med. 3(1):10.
   PubMedGoogle Scholar
• Lee YC, Tseng PH, Liou JM, Chen MJ, Chen CC, Tu CH, Chiang TH, Chiu HM, Lai CF, Ho JC, et al. 2014. Performance of a one-step fecal sample-based test for diagnosis of Helicobacter pylori infection in primary care and mass screening settings. J Formos Med Assoc. 113(12):899–907.
   PubMed Web of Science ®Google Scholar
• Leonardi M, La Marca G, Pajola B, Perandin F, Ligozzi M, Pomari E. 2020. Assessment of real-time PCR for Helicobacter pylori DNA detection in stool with co-infection of intestinal parasites: a comparative study of DNA extraction methods. BMC Microbiol. 20(1):131.
   PubMed Web of Science ®Google Scholar
• Leszczyńska K, Namiot A, Namiot Z, Leszczyńska J, Jakoniuk P, Chilewicz M, Namiot D, Kemona A, Milewski R, Bucki R. 2010. Patient factors affecting culture of Helicobacter pylori isolated from gastric mucosal specimens. Adv Med Sci. 55(2):161–166.
   PubMed Web of Science ®Google Scholar
• Li H, Bai R, Zhao Z, Tao L, Ma M, Jian JZ, Ding M, Dai Z, Bao X, Liu F. 2018. Application of droplet digital PCR to detect the pathogens of infectious diseases. Biosci Rep. 38(6):BSR20181170.
   PubMedGoogle Scholar
• Li HY, Lee CS, Kim DH, Lee JH. 2018. Flexible room-temperature NH3 sensor for ultrasensitive, selective, and humidity-independent gas detection. ACS Appl Mater Interfaces. 10(33):27858–27867.
   PubMed Web of Science ®Google Scholar
• Li Y, Lv T, He C, Wang H, Cram DS, Zhou L, Zhang J, Jiang W. 2020. Evaluation of multiplex ARMS-PCR for detection of Helicobacter pylori mutations conferring resistance to clarithromycin and levofloxacin. Gut Pathog. 12(1):35.
   PubMed Web of Science ®Google Scholar
• Liu Z, Su X. 2017. A novel fluorescent DNA sensor for ultrasensitive detection of Helicobacter pylori. Biosens Bioelectron. 87:66–72.
   PubMed Web of Science ®Google Scholar
• Llorca-Otero L, Toro-Rueda C. 2020. Diagnosis of Helicobacter pylori infection: progress and challenges. Enfermedades Infecc y Microbiol Clin (English ed). 38(9):407–409.
   PubMed Web of Science ®Google Scholar
• Makristathis A, Hirschl AM, Mégraud F, Bessède E. 2019. Review: diagnosis of Helicobacter pylori infection. Helicobacter. 24(S1):e12641.
   PubMedGoogle Scholar
• Malfertheiner P, Megraud F, O’Morain CA, Gisbert JP, Kuipers EJ, Axon AT, Bazzoli F, Gasbarrini A, Atherton J, Graham DY. et al. 2017. Management of Helicobacter pylori infection-the Maastricht V/florence consensus report. Gut. 66(1):6–30.
   PubMed Web of Science ®Google Scholar
• Marrero Rolon R, Cunningham SA, Mandrekar JN, Polo ET, Patel R. 2021. Clinical evaluation of a real-time pcr assay for simultaneous detection of Helicobacter pylori and genotypic markers of clarithromycin resistance directly from stool. J Clin Microbiol. 59(5):e03040-20.
   PubMed Web of Science ®Google Scholar
• Matrakool L, Tongtawee T, Bartpho T, Dechsukhum C, Loyd RA, Kaewpitoon SJ, Kaewpitoon N. 2016. Improved detection of Helicobacter pylori infection and premalignant gastric mucosa using conventional white light source gastroscopy. Asian Pacific J Cancer Prev. 17(4):2099–2103.
   PubMedGoogle Scholar
• McNicholl AG, Ducons J, Barrio J, Bujanda L, Forné-Bardera M, Aparcero R, Ponce J, Rivera R, Dedeu-Cuso JM, Garcia-Iglesias P. et al. 2017. Accuracy of the ultra-rapid urease test for diagnosis of Helicobacter pylori infection. Gastroenterol Hepatol. 40(10):651–657.
   PubMed Web of Science ®Google Scholar
• Mégraud F, Lehours P. 2007. Helicobacter pylori detection and antimicrobial susceptibility testing. Clin Microbiol Rev. 20(2):280–322.
   PubMed Web of Science ®Google Scholar
• Miftahussurur M. 2020. Noninvasive Helicobacter pylori diagnostic methods in Indonesia. Gut Liver. 14(5):553–559.
   PubMedGoogle Scholar
• Milani M, Moaddab Y, Sharifi Y. 2019. One piece biopsy for both rapid urease test and cultivation of Helicobacter pylori. J Microbiol Methods. 164:105674.
   PubMed Web of Science ®Google Scholar
• Mohammadian T, Ganji L. 2019. The diagnostic tests for detection of Helicobacter pylori infection. Monoclon Antib Immunodiagn Immunother. 38(1):1–7.
   PubMedGoogle Scholar
• Mosley O, Melling L, Tarn MD, Kemp C, Esfahani MMN, Pamme N, Shaw KJ. 2016. Sample introduction interface for on-chip nucleic acid-based analysis of: Helicobacter pylori from stool samples. Lab Chip. 16(11):2108–2115.
   PubMed Web of Science ®Google Scholar
• Nezami BG, Jani M, Alouani D, Rhoads DD, Sadri N. 2019. Helicobacter pylori mutations detected by next-generation sequencing in formalin-fixed, paraffin-embedded gastric biopsy specimens are associated with treatment failure. J Clin Microbiol. 57(7):e01834-18.
   PubMed Web of Science ®Google Scholar
• Noh CK, Lee GH, Park JW, Roh J, Han JH, Lee E, Park B, Lim SG, Shin SJ, Cheong JY, et al. 2020. Diagnostic accuracy of “sweeping” method compared to conventional sampling in rapid urease test for Helicobacter pylori detection in atrophic mucosa. Sci Rep. 10(1):18483.
   PubMed Web of Science ®Google Scholar
• Nosrati R, Golichenari B, Nezami A, Taghdisi SM, Karimi B, Ramezani M, Abnous K, Shaegh SAM. 2017. Helicobacter pylori point-of-care diagnosis: nano-scale biosensors and microfluidic systems. Trends Anal Chem. 97:428–444.
   Web of Science ®Google Scholar
• O’Connor A. 2021. The urea breath test for the noninvasive detection of Helicobacter pylori. Methods Mol Biol. 2283:15–20.
   PubMedGoogle Scholar
• Opekun AR, Zierold C, Rode A, Blocki FA, Fiorini G, Saracino IM, Vaira D, Sutton FM. 2020. Clinical performance of the automated LIAISON® meridian H. pylori SA Stool Antigen Test. Biomed Res Int. 2020:7189519.
   PubMed Web of Science ®Google Scholar
• Paloheimo L, Tiusanen T, Suovaniemi O, Syrjänen K. 2021. Serological biomarker test (GastroPanel®) in the diagnosis of functional gastric disorders, Helicobacter pylori and atrophic gastritis in patients examined for dyspeptic symptoms. Anticancer Res. 41(2):811–819.
   PubMed Web of Science ®Google Scholar
• Parente F, Bianchi Porro G. 2001. The 13C-urea breath test for non-invasive diagnosis of Helicobacter pylori infection: Which procedure and which measuring equipment? Eur J Gastroenterol Hepatol. 13:803–806.
   PubMed Web of Science ®Google Scholar
• Pastukh N, Binyamin D, On A, Paritsky M, Peretz A. 2017. GenoType® HelicoDR test in comparison with histology and culture for Helicobacter pylori detection and identification of resistance mutations to clarithromycin and fluoroquinolones. Helicobacter. 22(6):e12447.
   Web of Science ®Google Scholar
• Patel SK, Pratap CB, Jain AK, Gulati AK, Nath G. 2014. Diagnosis of Helicobacter pylori: What should be the gold standard? World J Gastroenterol. 20(36):12847–12859.
   PubMed Web of Science ®Google Scholar
• Perry-O’Keefe H, Stender H, Broomer A, Oliveira K, Coull J, Hyldig-Nielsen JJ. 2001. Filter-based PNA in situ hybridization for rapid detection, identification and enumeration of specific micro-organisms. J Appl Microbiol. 90(2):180–189.
   PubMed Web of Science ®Google Scholar
• Pichon M, Pichard B, Barrioz T, Plouzeau C, Croquet V, Fotsing G, Chéron A, Vuillemin É, Wangermez M, Vasseur P, et al. 2020. Diagnostic accuracy of a non-invasive test for the detection of Helicobacter pylori ClariR assay. J Clin Microbiol. 58(4):e01787-19.
   PubMed Web of Science ®Google Scholar
• Pohl D, Keller PM, Bordier V, Wagner K. 2019. Review of current diagnostic methods and advances in Helicobacter pylori diagnostics in the era of next generation sequencing. World J Gastroenterol. 25(32):4629–4660.
   PubMed Web of Science ®Google Scholar
• Poshtiban S, Javed MA, Arutyunov D, Singh A, Banting G, Szymanski CM, Evoy S. 2013. Phage receptor binding protein-based magnetic enrichment method as an aid for real time PCR detection of foodborne bacteria. Analyst. 138(19):5619–5626.
   PubMed Web of Science ®Google Scholar
• Ramírez-Lázaro MJ, Lario S, Quílez ME, Montserrat A, Bella MR, Junquera F, García-Martínez L, Casalots À, Parra T, Calvet X. 2020. Droplet digital pcr detects low-density infection in a significant proportion of Helicobacter pylori-negative gastric biopsies of dyspeptic patients. Clin Transl Gastroenterol. 11(6):e00184.
   PubMedGoogle Scholar
• Ranjbar R, Behzadi P, Farshad S. 2017. Advances in diagnosis and treatment of Helicobacter pylori infection. Acta Microbiol Immunol Hung. 64(3):273–292.
   PubMed Web of Science ®Google Scholar
• Robinson K, Atherton JC. 2021. The spectrum of Helicobacter-mediated diseases. Annu Rev Pathol. 16:123–144.
   PubMed Web of Science ®Google Scholar
• Sabbagh P, Javanian M, Koppolu V, Vasigala VKR, Ebrahimpour S. 2019. Helicobacter pylori infection in children: an overview of diagnostic methods. Eur J Clin Microbiol Infect Dis. 38(6):1035–1045.
   PubMed Web of Science ®Google Scholar
• Sabbagh P, Mohammadnia-Afrouzi M, Javanian M, Babazadeh A, Koppolu V, Vasigala VKR, Nouri HR, Ebrahimpour S. 2019. Diagnostic methods for Helicobacter pylori infection: ideals, options, and limitations. Eur J Clin Microbiol Infect Dis. 38(1):55–66.
   PubMed Web of Science ®Google Scholar
• Santos RS, Dakwar GR, Zagato E, Brans T, Figueiredo C, Raemdonck K, Azevedo NF, De Smedt SC, Braeckmans K. 2017. Intracellular delivery of oligonucleotides in Helicobacter pylori by fusogenic liposomes in the presence of gastric mucus. Biomaterials. 138:1–12.
   PubMed Web of Science ®Google Scholar
• Santos SB, Azeredo J. 2019. Bacteriophage-based biotechnological applications. Viruses. 11(8):737.
   PubMed Web of Science ®Google Scholar
• Santos SB, Costa AR, Carvalho C, Nóbrega FL, Azeredo J. 2018. Exploiting bacteriophage proteomes: the hidden biotechnological potential. Trends Biotechnol. 36(9):966–984.
   PubMed Web of Science ®Google Scholar
• Santos SB, Cunha AP, Macedo M, Nogueira CL, Brandão A, Costa SP, Melo LDR, Azeredo J, Carvalho CM. 2020. Bacteriophage-receptor binding proteins for multiplex detection of Staphylococcus and Enterococcus in blood. Biotechnol Bioeng. 117(11):3286–3298.
   PubMedGoogle Scholar
• Savarino V, Vigneri S, Celle G. 1999. The 13C urea breath test in the diagnosis of Helicobacter pylori infection. Gut. 45(Supplement 1):I18–i22.
   PubMedGoogle Scholar
• Schofield D, Sharp NJ, Westwater C. 2012. Phage-based platforms for the clinical detection of human bacterial pathogens. Bacteriophage. 2(2):105–283.
   PubMedGoogle Scholar
• Šeligová B, Lukáč Ľ, Bábelová M, Vávrová S, Sulo P. 2020. Diagnostic reliability of nested PCR depends on the primer design and threshold abundance of Helicobacter pylori in biopsy, stool, and saliva samples. Helicobacter. 25(2):e12680.
   PubMed Web of Science ®Google Scholar
• Seo JH, Bortolin K, Jones NL. 2020. Review: Helicobacter pylori infection in children. Helicobacter. 25(S1):e12742.
   PubMedGoogle Scholar
• Shafaie E, Saberi S, Esmaeili M, Karimi Z, Najafi S, Tashakoripoor M, Abdirad A, Hosseini ME, Mohagheghi MA, Khalaj V, et al. 2018. Multiplex serology of Helicobacter pylori antigens in detection of current infection and atrophic gastritis – a simple and cost-efficient method. Microb Pathog. 119:137–144.
   PubMed Web of Science ®Google Scholar
• Shahrashoob M, Mohsenifar A, Tabatabaei M, Rahmani-Cherati T, Mobaraki M, Mota A, Shojaei TR. 2016. Detection of Helicobacter pylori genome with an optical biosensor based on hybridization of urease gene with a gold nanoparticles-labeled probe. J Appl Spectrosc. 83(2):322–329.
   Web of Science ®Google Scholar
• Shi H, Shi Q, Grodner B, Lenz JS, Zipfel WR, Brito IL, De Vlaminck I. 2020. De Vlaminck I: highly multiplexed spatial mapping of microbial communities. Nature. 588(7839):676–681.
   PubMed Web of Science ®Google Scholar
• Shrestha R, Poudel R, Shakya S, Gurung RB, Makaju R, Koju P. 2020. Investigating the efficacy of triple drug therapy and sequential drug therapy in the eradication of Helicobacter pylori with respect to antigen stool test: a pilot study. Kathmandu Univ Med J. 18(1):74–83.
   PubMedGoogle Scholar
• Skrebinska S, Mégraud F, Bessède E. 2018. Diagnosis of Helicobacter pylori infection. Helicobacter. 23(Suppl 1):e12515.
   PubMedGoogle Scholar
• Sumrall ET, Röhrig C, Hupfeld M, Selvakumar L, Du J, Dunne M, Schmelcher M, Shen Y, Loessner MJ. 2020. Glycotyping and specific separation of Listeria monocytogenes with a novel bacteriophage protein tool kit. Appl Environ Microbiol. 86(13):e00612-20.
   PubMed Web of Science ®Google Scholar
• Sun L, Talarico S, Yao L, He L, Self S, You Y, Zhang H, Zhang Y, Guo Y, Liu G, et al. 2018. Droplet digital PCR-based detection of clarithromycin resistance in Helicobacter pylori isolates reveals frequent heteroresistance. J Clin Microbiol. 56(9):e00019-18.
   PubMed Web of Science ®Google Scholar
• Syrjänen K, Eskelinen M, Peetsalu A, Sillakivi T, Sipponen P, Härkönen M, Paloheimo L, Mäki M, Tiusanen T, Suovaniemi O, et al. 2019. GastroPanel® biomarker assay: the most comprehensive test for Helicobacter pylori infection and its clinical sequelae: a critical review. Anticancer Res. 39(3):1091–1104.
   PubMed Web of Science ®Google Scholar
• Szymczak A, Ferenc S, Majewska J, Miernikiewicz P, Gnus J, Witkiewicz W, Dąbrowska K. 2020. Application of 16S rRNA gene sequencing in Helicobacter pylori detection. PeerJ. 8:e9099.
   PubMed Web of Science ®Google Scholar
• Taborda MI, Aquea G, Nilo Y, Salvatierra K, López N, López S, Bresky G, Madariaga JA, Zaffiri V, Häberle S, et al. 2018. Non-invasive diagnostic of Helicobacter pylori in stools by nested-qPCR. Pol J Microbiol. 67(1):11–18.
   PubMed Web of Science ®Google Scholar
• Takeda T, Asaoka D, Nojiri S, Nishiyama M, Ikeda A, Yatagai N, Ishizuka K, Hiromoto T, Okubo S, Suzuki M, et al. 2020. Linked color imaging and the Kyoto classification of gastritis: evaluation of visibility and inter-rater reliability. Digestion. 101(5):598–607.
   PubMed Web of Science ®Google Scholar
• Talarico S, Safaeian M, Gonzalez P, Hildesheim A, Herrero R, Porras C, Cortes B, Larson A, Fang FC, Salama NR. 2016. Quantitative detection and genotyping of Helicobacter pylori from stool using droplet digital pcr reveals variation in bacterial loads that correlates with caga virulence gene carriage. Helicobacter. 21(4):325–333.
   PubMed Web of Science ®Google Scholar
• Trebesius K, Panthel K, Strobel S, Vogt K, Faller G, Kirchner T, Kist M, Heesemann J, Haas R. 2000. Rapid and specific detection of Helicobacter pylori macrolide resistance in gastric tissue by fluorescent in situ hybridisation. Gut. 46(5):608–614.
   PubMed Web of Science ®Google Scholar
• Uotani T, Graham DY, DeBakey ME. 2015. Diagnosis of Helicobacter pylori using the rapid urease test. Ann Transl Med. 3(1):9.
   PubMedGoogle Scholar
• Vörhendi N, Soós A, Anne Engh M, Tinusz B, Szakács Z, Pécsi D, Mikó A, Sarlós P, Hegyi P, Eröss B. 2020. Accuracy of the Helicobacter pylori diagnostic tests in patients with peptic ulcer bleeding: a systematic review and network meta-analysis. Therap Adv Gastroenterol. 13:1756284820965324.
   Web of Science ®Google Scholar
• Wan W, Pu Q, Huang X, Luo D, Hu Y, Liu Y. 2021. Comparison of quantum dot immunofluorescence histochemistry with conventional immunohistochemistry in detecting Helicobacter pylori infection in paraffin-embedded tissues of gastric biopsy. J Mol Histol. 52(3):461–466.
   PubMed Web of Science ®Google Scholar
• Wang L, Lin XC, Li HL, Yang XS, Zhang L, Li X, Bai P, Wang Y, Fan X, Ding YM, et al. 2019. Clinical significance and influencing factors of linked color imaging technique in real-time diagnosis of active Helicobacter pylori infection. Chin Med J. 132(20):2395–2401.
   PubMed Web of Science ®Google Scholar
• Wang YK, Kuo FC, Liu CJ, Wu MC, Shih HY, Wang SSW, Wu JY, Kuo CH, Huang YK, Wu DC. 2015. Diagnosis of Helicobacter pylori infection: current options and developments. World J Gastroenterol. 21(40):11221–11235.
   PubMed Web of Science ®Google Scholar
• Weigt J, Malfertheiner P, Canbay A, Haybaeck J, Bird-Lieberman E, Link A. 2020. Blue light imaging and linked color imaging for the characterization of mucosal changes in chronic gastritis: a clinicians view and brief technical report. Dig Dis. 38(1):9–14.
   PubMed Web of Science ®Google Scholar
• Welch JLM, Hasegawa Y, McNulty NP, Gordon JI, Borisy GG. 2017. Spatial organization of a model 15-member human gut microbiota established in gnotobiotic mice. Proc Natl Acad Sci USA. 114:E9105–E9114.
   PubMed Web of Science ®Google Scholar
• Xie Y, Zhi X, Su H, Wang K, Yan Z, He N, Zhang J, Chen D, Cui D. 2015. A Novel Electrochemical microfluidic chip combined with multiple biomarkers for early diagnosis of gastric cancer. Nanoscale Res Lett. 10(1):1–9.
   PubMedGoogle Scholar
• Xuan SH, Wu LP, Zhou YG, Xiao MB. 2016. Detection of clarithromycin-resistant Helicobacter pylori in clinical specimens by molecular methods: a review. J Glob Antimicrob Resist. 4:35–41.
   PubMed Web of Science ®Google Scholar
• Yari F, Abiri R, Aryan E, Ahmadi Jouybari T, Navabi J, Alvandi A. 2016. Loop-mediated isothermal amplification as a fast noninvasive method of Helicobacter pylori diagnosis. J Clin Lab Anal. 30(5):464–470.
   PubMed Web of Science ®Google Scholar
• Yasuda T, Hiroyasu T, Hiwa S, Okada Y, Hayashi S, Nakahata Y, Yasuda Y, Omatsu T, Obora A, Kojima T, et al. 2020. Potential of automatic diagnosis system with linked color imaging for diagnosis of Helicobacter pylori infection. Dig Endosc. 32(3):373–381.
   PubMed Web of Science ®Google Scholar
• Yin G, Bie S, Gu H, Shu X, Zheng W, Peng K, Zhao H, Li F, Chen B, Botchway BOA, et al. 2020. Application of gene chip technology in the diagnostic and drug resistance detection of Helicobacter pylori in children. J Gastroenterol Hepatol. 35(8):1331–1339.
   PubMed Web of Science ®Google Scholar
• Yuen B, Zbinden R, Fried M, Bauerfeind P, Bernardi M. 2005. Cultural recovery and determination of antimicrobial susceptibility in Helicobacter pylori by using commercial transport and isolation media. Infection. 33(2):77–81.
   PubMed Web of Science ®Google Scholar
• Zhang L, Cao D, Tang T, Zuo Z, Huang J, Duan L. 2018. A label-free fluorescence method for detection of ureC gene and diagnosis of Helicobacter pylori infection. Luminescence. 33(5):941–946.
   PubMed Web of Science ®Google Scholar
• Zheng W, Zhang X, Kim JJ, Zhu X, Ye G, Ye B, Wang J, Luo S, Li J, Yu T, et al. 2019. High accuracy of convolutional neural network for evaluation of Helicobacter pylori infection based on endoscopic images: preliminary experience. Clin Transl Gastroenterol. 10(12):e00109.
   PubMedGoogle Scholar
• Zhu Y, Wang F, Zhou Y, Xia G, Dong L, He W, Xiao B. 2019. Blue laser magnifying endoscopy in the diagnosis of chronic gastritis. Exp Ther Med. 18(3):1993–2000.
   PubMed Web of Science ®Google Scholar