REFERENCES
- Afflerbach H., Schroder O., Wagner R. Effects of the Escherichia coli DNA-binding protein H-NS on rRNA synthesis in vivo. Mol Microbiol 1998; 28: 641–653, [INFOTRIEVE], [CSA]
- Agrawal A., Eastman Q. M., Schatz D. G. Transposition mediated by RAG1 and RAG2 and its implications for the evolution of the immune system. Nature 1998; 394: 744–751, [INFOTRIEVE], [CSA], [CROSSREF]
- Aldaz H., Schuster E., Baker T. A. The interwoven architecture of the Mu transposase couples DNA synapsis to catalysis. Cell 1996; 85: 257–269, [INFOTRIEVE], [CSA], [CROSSREF]
- Ali Azam T., Iwata A., Nishimura A., Ueda S., Ishihama A. Growth phase-dependent variation in protein composition of the Escherichia coli nucleoid. J Bacteriol 1999; 181: 6361–6370, [INFOTRIEVE], [CSA]
- Allingham J. S., Haniford D. B. Mechanisms of metal ion action in Tn10 transposition. J Mol Biol 2002; 319: 53–65, [INFOTRIEVE], [CSA], [CROSSREF]
- Allingham J. S., Wardle S. J., Haniford D. B. Determinants for hairpin formation in Tn10 transposition. Embo J 2001; 20: 2931–42, [INFOTRIEVE], [CSA], [CROSSREF]
- Bender J., Kleckner N. Genetic evidence that Tn10 transposes by a nonreplicative mechanism. Cell 1986; 45: 801–815, [INFOTRIEVE], [CSA], [CROSSREF]
- Benjamin H. W., Kleckner N. Intramolecular transposition by Tn10. Cell 1989; 59: 373–383, [INFOTRIEVE], [CSA], [CROSSREF]
- Berg D. E. Transposon Tn5. Mobile DNA, D. E. Berg, M. M. Howe. ASM Press, Washington, D.C. 1989; Vol. I: 185–210
- Bhasin A., Goryshin I. Y., Reznikoff W. S. Hairpin formation in Tn5 transposition. J Biol Chem 1999; 274: 37021–37029, [INFOTRIEVE], [CSA], [CROSSREF]
- Bloch V., Yang Y., Margeat E., Chavanieu A., Auge M. T., Robert B., Arold S., Rimsky S., Kochoyan M. The H-NS dimerization domain defines a new fold contributing to DNA recognition. Nat Struct Biol 2003; 10: 212–218, [INFOTRIEVE], [CSA], [CROSSREF]
- Braam L. A., Goryshin I. Y., Reznikoff W. S. A mechanism for Tn5 inhibition. carboxyl-terminal dimerization. J Biol Chem 1999; 274: 86–92, [CSA], [CROSSREF]
- Bruist M. F., Glasgow A. C., Johnson R. C., Simon M. I. Fis binding to the recombinational enhancer of the Hin DNA inversion system. Genes Dev 1987; 1: 762–772, [INFOTRIEVE], [CSA]
- Chalmers R., Guhathakurta A., Benjamin H., Kleckner N. IHF modulation of Tn10 transposition: sensory transduction of supercoiling status via a proposed protein/DNA molecular spring. Cell 1998; 93: 897–908, [INFOTRIEVE], [CSA], [CROSSREF]
- Coros A. M., Twiss E., Tavakoli N. P., Derbyshire K. M. Genetic evidence that GTP is required for transposition of IS903 and Tn552 in Escherichia coli. J Bacteriol 2005; 187: 4598–4606, [INFOTRIEVE], [CSA], [CROSSREF]
- Craig N. L., Nash H. A. E. coli integration host factor binds to specific sites in DNA. Cell 1984; 39: 707–716, [INFOTRIEVE], [CSA], [CROSSREF]
- Craigie R., Mizuuchi K. Transposition of Mu DNA: joining of Mu to target DNA can be uncoupled from cleavage at the ends of Mu. Cell 1987; 51: 493–501, [INFOTRIEVE], [CSA], [CROSSREF]
- Crellin P., Chalmers R. Protein-DNA contacts and conformational changes in the Tn10 transpososome during assembly and activation for cleavage. Embo J 2001; 20: 3882–3891, [INFOTRIEVE], [CSA], [CROSSREF]
- Crellin P., Sewitz S., Chalmers R. DNA looping and catalysis; the IHF-folded arm of Tn10 promotes conformational changes and hairpin resolution. Mol Cell 2004; 13: 537–547, [INFOTRIEVE], [CSA], [CROSSREF]
- Davies D. R., Goryshin I. Y., Reznikoff W. S., Rayment I. Three-dimensional structure of the Tn5 synaptic complex transposition intermediate. Science 2000; 289: 77–85, [INFOTRIEVE], [CSA], [CROSSREF]
- Ditto M. D., Roberts D., Weisberg R. A. Growth phase variation of integration host factor level in Escherichia coli. J Bacteriol 1994; 176: 3738–3748, [INFOTRIEVE], [CSA]
- Dorman C. J. H-NS: a universal regulator for a dynamic genome. Nat Rev Microbiol 2004; 2: 391–400, [INFOTRIEVE], [CSA], [CROSSREF]
- Foster T. J., Davis M. A., Roberts D. E., Takeshita K., Kleckner N. Genetic organization of transposon Tn10. Cell 1981; 23: 201–213, [INFOTRIEVE], [CSA], [CROSSREF]
- Garcia J., Madrid C., Juarez A., Pons M. New Roles for Key Residues in Helices H1 and H2 of the Escherichia coli H-NS N-terminal Domain: H-NS Dimer Stabilization and Hha Binding. J Mol Biol 2006, (in press)[CSA]
- Halling S. M., Kleckner N. A symmetrical six-base-pair target site sequence determines Tn10 insertion specificity. Cell 1982; 28: 155–163, [INFOTRIEVE], [CSA], [CROSSREF]
- Haniford D. B., Benjamin H. W., Kleckner N. Kinetic and structural analysis of a cleaved donor intermediate and a strand transfer intermediate in Tn10 transposition. Cell 1991; 64: 171–179, [INFOTRIEVE], [CSA], [CROSSREF]
- Hiom K., Gellert M. Assembly of a 12/23 paired signal complex: a critical control point in V(D)J recombination. Mol Cell 1998; 1: 1011–1019, [INFOTRIEVE], [CSA], [CROSSREF]
- Horak R., Ilves H., Pruunsild P., Kuljus M., Kivisaar M. The ColR-ColS two-component signal transduction system is involved in regulation of Tn4652 transposition in Pseudomonas putida under starvation conditions. Mol Microbiol 2004; 54: 795–807, [INFOTRIEVE], [CSA], [CROSSREF]
- Humayun S., Wardle S. J., Shilton B. H., Pribil P. A., Liburd J., Haniford D. B. Tn10 transposase mutants with altered transpososome unfolding properties are defective in hairpin formation. J Mol Biol 2005; 346: 703–16, [INFOTRIEVE], [CSA], [CROSSREF]
- Ilves H., Horak R., Kivisaar M. Involvement of sigma(S) in starvation-induced transposition of Pseudomonas putida transposon Tn4652. J Bacteriol 2001; 183: 5445–5448, [INFOTRIEVE], [CSA], [CROSSREF]
- Ilves H., Horak R., Teras R., Kivisaar M. IHF is the limiting host factor in transposition of Pseudomonas putida transposon Tn4652 in stationary phase. Mol Microbiol 2004; 51: 1773–1785, [INFOTRIEVE], [CSA], [CROSSREF]
- Junop M. S., Haniford D. B. Multiple roles for divalent metal ions in DNA transposition: distinct stages of Tn10 transposition have different Mg2+ requirements. Embo J 1996; 15: 2547–2455, [INFOTRIEVE], [CSA]
- Junop M. S., Haniford D. B. Factors responsible for target site selection in Tn10 transposition: a role for the DDE motif in target DNA capture. Embo J 1997; 16: 2646–55, [INFOTRIEVE], [CSA], [CROSSREF]
- Kennedy A. K. Mechanistic Aspects of Tn10 Transposition. Biochemistry. University of Western Ontario, London 1999
- Kennedy A. K., Guhathakurta A., Kleckner N., Haniford D. B. Tn10 transposition via a DNA hairpin intermediate. Cell 1998; 95: 125–134, [INFOTRIEVE], [CSA], [CROSSREF]
- Kennedy A. K., Haniford D. B. Isolation and characterization of IS10 transposase separation of function mutants: identification of amino acid residues in transposase that are important for active site function and the stability of transposition intermediates. J Mol Biol 1996; 256: 533–457, [INFOTRIEVE], [CSA], [CROSSREF]
- Kennedy A. K., Haniford D. B., Mizuuchi K. Single active site catalysis of the successive phosphoryl transfer steps by DNA transposases: insights from phosphorothioate stereoselectivity. Cell 2000; 101: 295–305, [INFOTRIEVE], [CSA], [CROSSREF]
- Kleckner N. Transposon Tn10. Mobile DNA, D. E. Berg, M. M. Howe. ASM Press, Washington, D.C. 1989; Vol. I: 227–268
- Kwon J., Imbalzano A. N., Matthews A., Oettinger M. A. Accessibility of nucleosomal DNA to V(D)J cleavage is modulated by RSS positioning and HMG1. Mol Cell 1998; 2: 829–839, [INFOTRIEVE], [CSA], [CROSSREF]
- La Teana A., Brandi A., Falconi M., Spurio R., Pon C. L., Gualerzi C. O. Identification of a cold shock transcriptional enhancer of the Escherichia coli gene encoding nucleoid protein H-NS. Proc Natl Acad Sci U S A 1991; 88: 10907–10911, [INFOTRIEVE], [CSA], [CROSSREF]
- Liu D., Crellin P., Chalmers R. Cyclic changes in the affinity of protein-DNA interactions drive the progression and regulate the outcome of the Tn10 transposition reaction. Nucleic Acids Res 2005; 33: 1982–1992, [INFOTRIEVE], [CSA], [CROSSREF]
- Madrid C., Nieto J. M., Paytubi S., Falconi M., Gualerzi C. O., Juarez A. Temperature-and H-NS-dependent regulation of a plasmid-encoded virulence operon expressing Escherichia coli hemolysin. J Bacteriol 2002; 184: 5058–5066, [INFOTRIEVE], [CSA], [CROSSREF]
- Manna D., Wang X., Higgins N. P. Mu and IS1 transpositions exhibit strong orientation bias at the Escherichia coli bgl locus. J Bacteriol 2001; 183: 3328–3335, [INFOTRIEVE], [CSA], [CROSSREF]
- McBlane J. F., van Gent D. C., Ramsden D. A., Romeo C., Cuomo C. A., Gellert M., Oettinger M. A. Cleavage at a V(D)J recombination signal requires only RAG1 and RAG2 proteins and occurs in two steps. Cell 1995; 83: 387–395, [INFOTRIEVE], [CSA], [CROSSREF]
- Morisato D., Kleckner N. Tn10 transposition and circle formation in vitro. Cell 1987; 51: 101–111, [INFOTRIEVE], [CSA], [CROSSREF]
- Morisato D., Way J. C., Kim H. J., Kleckner N. Tn10 transposase acts preferentially on nearby transposon ends in vivo. Cell 1983; 32: 799–807, [INFOTRIEVE], [CSA], [CROSSREF]
- Nagy Z., Chandler M. Regulation of transposition in bacteria. Res Microbiol 2004; 155: 387–398, [INFOTRIEVE], [CSA], [CROSSREF]
- Plasterk R. H. RNA silencing: the genome's immune system. Science 2002; 296: 1263–1265, [INFOTRIEVE], [CSA], [CROSSREF]
- Pribil P. A., Haniford D. B. Substrate recognition and induced DNA deformation by transposase at the target-capture stage of Tn10 transposition. J Mol Biol 2000; 303: 145–159, [INFOTRIEVE], [CSA], [CROSSREF]
- Pribil P. A., Haniford D. B. Target DNA bending is an important specificity determinant in target site selection in Tn10 transposition. J Mol Biol 2003; 330: 247–259, [INFOTRIEVE], [CSA], [CROSSREF]
- Pribil P. A., Wardle S. J., Haniford D. B. Enhancement and rescue of target capture in Tn10 transposition by site-specific modifications in target DNA. Mol Microbiol 2004; 52: 1173–1186, [INFOTRIEVE], [CSA], [CROSSREF]
- Raleigh E. A., Kleckner N. Quantitation of insertion sequence IS10 transposase gene expression by a method generally applicable to any rarely expressed gene. Proc Natl Acad Sci U S A 1986; 83: 1787–1791, [INFOTRIEVE], [CSA], [CROSSREF]
- Reusch R. N., Shabalin O., Crumbaugh A., Wagner R., Schroder O., Wurm R. Posttranslational modification of E. coli histone-like protein H-NS and bovine histones by short-chain poly-(R)-3-hydroxybutyrate (cPHB). FEBS Lett 2002; 527: 319–322, [INFOTRIEVE], [CSA], [CROSSREF]
- Reynolds A. E., Felton J., Wright A. Insertion of DNA activates the cryptic bgl operon in E. coli K12. Nature 1981; 293: 625–629, [INFOTRIEVE], [CSA]
- Reznikoff W. S. Tn5 Transposition. Mobile DNA, N. L. Craig, R. Craigie, M. Gellert, A. M. Lambowitz. ASM Press, Washington, D.C. 2002; Vol. II: 403–422
- Rice P. A., Yang S., Mizuuchi K., Nash H. A. Crystal structure of an IHF-DNA complex: a protein-induced DNA U-turn. Cell 1996; 87: 1295–306, [INFOTRIEVE], [CSA]
- Rouquette C., Serre M. C., Lane D. Protective role for H-NS protein in IS1 transposition. J Bacteriol 2004; 186: 2091–2098, [INFOTRIEVE], [CSA], [CROSSREF]
- Sakai J., Chalmers R. M., Kleckner N. Identification and characterization of a pre-cleavage synaptic complex that is an early intermediate in Tn10 transposition. Embo J 1995; 14: 4374–4383, [INFOTRIEVE], [CSA]
- Sakai J., Kleckner N. The Tn10 synaptic complex can capture a target DNA only after transposon excision. Cell 1997; 89: 205–214, [INFOTRIEVE], [CSA], [CROSSREF]
- Sakai J. S., Kleckner N., Yang X., Guhathakurta A. Tn10 transpososome assembly involves a folded intermediate that must be unfolded for target capture and strand transfer. Embo J 2000; 19: 776–785, [INFOTRIEVE], [CSA], [CROSSREF]
- Savilahti H., Mizuuchi K. Mu transpositional recombination: donor DNA cleavage and strand transfer in trans by the Mu transposase. Cell 1996; 85: 271–280, [INFOTRIEVE], [CSA], [CROSSREF]
- Schnetz K., Rak B. IS5: a mobile enhancer of transcription in Escherichia coli. Proc Natl Acad Sci U S A 1992; 89: 1244–1248, [INFOTRIEVE], [CSA], [CROSSREF]
- Sewitz S., Crellin P., Chalmers R. The positive and negative regulation of Tn10 transposition by IHF is mediated by structurally asymmetric transposon arms. Nucleic Acids Res 2003; 31: 5868–7586, [INFOTRIEVE], [CSA], [CROSSREF]
- Shen M. M., Raleigh E. A., Kleckner N. Physical analysis of Tn10-and IS10-promoted transpositions and rearrangements. Genetics 1987; 116: 359–369, [INFOTRIEVE], [CSA]
- Signon L., Kleckner N. Negative and positive regulation of Tn10/IS10-promoted recombination by IHF: two distinguishable processes inhibit transposition off of multicopy plasmid replicons and activate chromosomal events that favor evolution of new transposons. Genes Dev 1995; 9: 1123–1136, [INFOTRIEVE], [CSA]
- Skelding Z., Sarnovsky R., Craig N. L. Formation of a nucleoprotein complex containing Tn7 and its target DNA regulates transposition initiation. Embo J 2002; 21: 3494–3504, [INFOTRIEVE], [CSA], [CROSSREF]
- Stella S., Falconi M., Lammi M., Gualerzi C. O., Pon C. L. Environmental control of the in vivo oligomerization of nucleoid protein H-NS. J Mol Biol 2006; 355: 169–174, [INFOTRIEVE], [CSA], [CROSSREF]
- Stella S., Spurio R., Falconi M., Pon C. L., Gualerzi C. O. Nature and mechanism of the in vivo oligomerization of nucleoid protein H-NS. Embo J 2005; 24: 2896–2905, [INFOTRIEVE], [CSA], [CROSSREF]
- Surette M. G., Buch S. J., Chaconas G. Transpososomes: stable protein-DNA complexes involved in the in vitro transposition of bacteriophage Mu DNA. Cell 1987; 49: 253–262, [INFOTRIEVE], [CSA], [CROSSREF]
- Surette M. G., Lavoie B. D., Chaconas G. Action at a distance in Mu DNA transposition: an enhancer-like element is the site of action of supercoiling relief activity by integration host factor (IHF). Embo J 1989; 8: 3483–3489, [INFOTRIEVE], [CSA]
- Swingle B., O'Carroll M., Haniford D., Derbyshire K. M. The effect of host-encoded nucleoid proteins on transposition: H-NS influences targeting of both IS903 and Tn10. Mol Microbiol 2004; 52: 1055–1067, [INFOTRIEVE], [CSA], [CROSSREF]
- Twiss E., Coros A. M., Tavakoli N. P., Derbyshire K. M. Transposition is modulated by a diverse set of host factors in Escherichia coli and is stimulated by nutritional stress. Mol Microbiol 2005; 57: 1593–1607, [INFOTRIEVE], [CSA], [CROSSREF]
- Ueguchi C., Suzuki T., Yoshida T., Tanaka K., Mizuno T. Systematic mutational analysis revealing the functional domain organization of Escherichia coli nucleoid protein H-NS. J Mol Biol 1996; 263: 149–162, [INFOTRIEVE], [CSA], [CROSSREF]
- van Gent D. C., Hiom K., Paull T. T., Gellert M. Stimulation of V(D)J cleavage by high mobility group proteins. Embo J 1997; 16: 2665–2670, [INFOTRIEVE], [CSA], [CROSSREF]
- Wardle S. J., O'Carroll M., Derbyshire K. M., Haniford D. B. The global regulator H-NS acts directly on the transpososome to promote Tn10 transposition. Genes Dev 2005; 19: 2224–2235, [INFOTRIEVE], [CSA], [CROSSREF]
- Watson M. A., Chaconas G. Three-site synapsis during Mu DNA transposition: a critical intermediate preceding engagement of the active site. Cell 1996; 85: 435–445, [INFOTRIEVE], [CSA], [CROSSREF]
- Way J. C., Kleckner N. Essential sites at transposon Tn 10 termini. Proc Natl Acad Sci U S A 1984; 81: 3452–3456, [INFOTRIEVE], [CSA], [CROSSREF]
- Welch T. J., Farewell A., Neidhardt F. C., Bartlett D. H. Stress response of Escherichia coli to elevated hydrostatic pressure. J Bacteriol 1993; 175: 7170–7177, [INFOTRIEVE], [CSA]
- Yamada H., Yoshida T., Tanaka K., Sasakawa C., Mizuno T. Molecular analysis of the Escherichia coli hns gene encoding a DNA-binding protein, which preferentially recognizes curved DNA sequences. Mol Gen Genet 1991; 230: 332–336, [INFOTRIEVE], [CSA], [CROSSREF]
- Yang J. Y., Jayaram M., Harshey R. M. Positional information within the Mu transposase tetramer: catalytic contributions of individual monomers. Cell 1996; 85: 447–455, [INFOTRIEVE], [CSA], [CROSSREF]
- Yin J. C., Reznikoff W. S. dnaA, an essential host gene, and Tn5 transposition. J Bacteriol 1987; 169: 4637–4645, [INFOTRIEVE], [CSA]
- Yoder J. A., Walsh C. P., Bestor T. H. Cytosine methylation and the ecology of intragenomic parasites. Trends Genet 1997; 13: 335–340, [INFOTRIEVE], [CSA], [CROSSREF]
- York D., Reznikoff W. S. Purification and biochemical analyses of a monomeric form of Tn5 transposase. Nucleic Acids Res 1996; 24: 3790–3796, [INFOTRIEVE], [CSA], [CROSSREF]
- Zhou L., Mitra R., Atkinson P. W., Hickman A. B., Dyda F., Craig N. L. Transposition of hAT elements links transposable elements and V(D)J recombination. Nature 2004; 432: 995–1001, [INFOTRIEVE], [CSA], [CROSSREF]