Molecular cloning and bioinformatics analysis of a novel spliced variant of survivin from human breast cancer cells

References

• Ambrosini G, Adida C, Altieri DC. A novel anti- apoptotic gene, survivin, expressed in cancer and lymphoma. Nat Med 1997; 3(8)917–921
   PubMed Web of Science ®Google Scholar
• Asanuma K, Tsuji N, Endoh T, Yagihashi A, Watanabe N. Survivin enhances Fas ligand expression via up- regulation of specificity protein 1- mediated gene transcription in colon cancer cells. J Immunol 2004; 172(6)922–929
   Google Scholar
• Badran A, Yoshida A, Ishikawa K, Goi T, Yamaguchi A, Ueda T, Inuzuka M. Identification of a novel splice variant of the human anti-apoptopsis gene survivin. Biochem Biophys Res Commun 2004; 314(3)902–907
   PubMed Web of Science ®Google Scholar
• Bairoch A. PROSITE: a dictionary of sites and patterns in proteins. Nucleic Acids Res 1992; 20(Suppl)2013–2018
   PubMedGoogle Scholar
• Bonneau R, Strauss CE, Rohl CA, Chivian D, Bradley P, Malmstrom L, Robertson T, Baker D. De novo prediction of three-dimensional structures for major protein families. J Mol Biol 2002; 322(1)65–78
   Google Scholar
• Chantalat L, Skoufias DA, Kleman JP, Jung B, Dideberg O, Margolis RL. Crystal structure of human survivin reveals a bow tie-shaped dimer with two unusual alpha-helical extensions. Mol Cell 2000; 6(1)183–189
   Google Scholar
• Chiou SK, Moon WS, Jones MK, Tarnawski AS. Survivin expression in the stomach: implications for mucosal integrity and protectio. Biochem Biophys Res Commun 2003; 305(2)374–379
   Google Scholar
• Chothia C, Lesk AM. The relation between the divergence of sequence and structure in proteins. EMBO J 1986; 5: 823–826
   PubMed Web of Science ®Google Scholar
• Conway EM, Pollefeyt S, Cornelissen J, De-Baere I, Steiner-Mosonyi M, Ong K, Baens M, Collen D, Schuh AC. Three differentially expressed survivin cDNA variants encode proteins with distinct antiapoptotic functions. Blood 2000; 95(4)1435–1442
   Google Scholar
• Fraser AG, James C, Evan GI, Hengartner MO. Caenorhabditis elegans inhibitor of apoptosis protein (IAP) homologue BIR-1 plays a conserved role in cytokinesis. Curr Biol 1999; 9(6)292–301
   PubMed Web of Science ®Google Scholar
• Hengartner MO. The biochemistry of apoptosis. Nature 2000; 407(6805)770–776
   PubMed Web of Science ®Google Scholar
• Kawasaki H, Toyoda M, Shinohara H, Okuda J, Watanabe I, Yamamoto T, Tanaka K, Tenjo T, Tanigawa N. Expression of survivin correlates with apoptosis, proliferation, and angiogenesis during human colorectal tumorigenesis. Cancer 2001; 91(11)2026–2032
   Google Scholar
• Kishi H, Igawa M, Kikuno N, Yoshino T, Urakami S, Shiina H. Expression of the survivin gene in prostate cancer: correlation with clinicopathological characteristics, proliferative activity and apoptosis. J Urol 2004; 171(5)1855–1860
   Google Scholar
• Li F, Altieri DC. Transcriptional analysis of human survivin gene expression. Biochem J 1999; 344(11)305–311
   Google Scholar
• Lupas A, Van Dyke M, Stock J. Predicting coiled coils from protein sequences. Science 1991; 252(5010)1162–1164
   Google Scholar
• Mahotka C, Wenzel M, Springer E, Gabbert HE, Gerharz CD. Survivin- deltaEx3 and survivin-2 B: Two novel splice variants of the apoptosis inhibitor survivin with different antiapoptotic properties. Cancer Res 1999; 59(24)6097–6102
   PubMed Web of Science ®Google Scholar
• Meiler J, Baker D. Coupled prediction of protein secondary and tertiary structure. Proc Natl Acad Sci USA 2003; 100(23)12105–12110
   Google Scholar
• Miller LK. An exegesis of IAPs: salvation and surprises from BIR motifs. Trends Cell Biol 1999; 9(8)323–328
   PubMed Web of Science ®Google Scholar
• Muchmore SW, Chen J, Jakob C, Zakula D, Matayoshi ED, Wu W, Zhang H, Li F, Ng SC, Altieri DC. Crystal structure and mutagenic analysis of the inhibitor-of-apoptosis protein survivin. Mol Cell 2000; 6(1)173–182
   Google Scholar
• Mueller JL, Ripoll DR, Aquadro CF, Wolfner MF. Comparative structural modeling and inference of conserved protein classes in Drosophila seminal fluid. Proc Natl Acad Sci USA 2004; 101(37)13542–13547
   Google Scholar
• Nasu S, Yagihashi A, Izawa A, Saito K, Asanuma K, Nakamura M, Kobayashi D, Okazaki M. Survivin mRNA expression in patients with breast cancer. Anticancer Res 2002; 22(3)1839–1843
   Google Scholar
• Nicholson DW. From bench to clinic with apoptosis- based therapeutic agents. Nature 2000; 407(6805)810–816
   PubMed Web of Science ®Google Scholar
• Pawson T. Protein modules and signaling. Nature 1995; 373(6515)573–580
   PubMed Web of Science ®Google Scholar
• Reed JC. Dysregulation of apoptosis in cancer. J Clin Oncol 1999; 17(9)2941–2953
   PubMed Web of Science ®Google Scholar
• Rodel C, Haas J, Groth A. Spontaneous and radiation- induced apoptosis in colorectal carcinoma cells with different intrinsic radiosensitivities: survivin as a radioresistance factor. Int J Radiat Oncol Biol Phys 2003; 55(5)1341–1347
   Google Scholar
• Rohl CA, Strauss CE, Chivian D, Baker D. Modeling structurally variable regions in homologous proteins with Rosetta. Proteins 2004; 55(3)656–677
   Google Scholar
• Shariat SF, Lotan Y, Saboorian H, Khoddami SM, Roehrborn CG, Slawin KM, Ashfaq R. Survivin expression is associated with features of biologically aggressive prostate carcinoma. Cancer 2004; 100(4)751–757
   Google Scholar
• Shen C, Buck A, Polat B, Schmid-Kotsas A, Matuschek C, Gross HJ, Bachem M, Reske SN. Triplex-forming oligodeoxynucleotides targeting survivin inhibit proliferation and induce apoptosis of human lung carcinoma cells. Cancer Gene Ther 2003; 10(5)403–410
   Google Scholar
• Shi Y. Survivin structure: Crystal unclear. Nat Struct Biol 2000; 7(8)620–623
   Google Scholar
• Shin S, Sung BJ, Cho YS, Kim HJ, Ha NC, Hwang JI, Chung CW, Jung YK, Oh BH. An anti-apoptotic protein human survivin is a direct inhibitor of caspase-3 and-7. Biochemistry 2001; 40(4)1117–1123
   PubMed Web of Science ®Google Scholar
• Tanaka K, Iwamoto S, Gon G, Nohara T, Iwamoto M, Tanigawa N. Expression of survivin and its relationship to loss of apoptosis in breast carcinomas. Clin Cancer Res 2000; 6(1)127–134
   PubMed Web of Science ®Google Scholar
• Verdecia MA, Huang H, Dutil E, Kaiser DA, Hunter T, Noel JP. Structure of the human anti-apoptotic protein survivin reveals a dimeric arrangement. Nat Struct Biol 2000; 7(7)602–608
   Google Scholar