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Original

The complete nucleotide sequence of the mitochondrial genome of Tetraodon nigroviridis

Full Length Research Paper

, , , &
Pages 115-121 | Received 18 Jan 2006, Published online: 11 Jul 2009

References

  • Anderson S, Bankier AT, Barrel BG, deBruijn MHL, Coulson A, Drouin J, Speron YC, Nierlich DP, Roe BA, Sanger F, Schreier PH, Smith AJH, Staden R, Young Y. Sequence and organization of human mitochondrial genome. Nature 1981; 290: 457–465
  • Aparicio S, Chapman J, Stupka E, Putnam N, Chia JM, Dehal P, Christoffels A, Rash S, Hoon S, Smit A, Gelpke MD, Roach J, Oh T, Ho IY, Wong M, Detter C, Verhoef F, Predki P, Tay A, Lucas S, Richardson P, Smith SF, Clark MS, Edwards YJ, Doggett N, Zharkikh A, Tavtigian SV, Pruss D, Barnstead M, Evans C, Baden H, Powell J, Glusman G, Rowen L, Hood L, Tan YH, Elgar G, Hawkins T, Venkatesh B, Rokhsar D, Brenner S. Whole-genome shotgun assembly and analysis of the genome of Fugu rubripes. Science 2002; 297(5585)1301–1310
  • Bernardi G. The compositional evolution of vertebrate genomes. Gene 2000; 259(1–2)31–43
  • Binder S, Marchfelder A, Brennicke A. RNA editing of tRNA(Phe) and tRNA(Cys) in mitochondria of Oenothera berteriana is initiated in precursor molecules. Mol Gen Genet 1994; 244(1)67–74
  • Boore JL. Animal mitochondrial genomes. Nucleic Acids Res 1999; 27(8)1767–1780
  • Boore JL, Brown WM. Complete sequence of the mitochondrial-DNA of the annelid worm Lumbricus-Terrestris. Genetics 1995; 141(1)305–319
  • Boore JL, Daehler LL, Brown WM. Complete sequence, gene arrangement, and genetic code of mitochondrial DNA of the cephalochordate Branchiostoma floridae (Amphioxus). Mol Biol Evol 1999; 16(3)410–418
  • Broughton RE, Milam JE, Roe BA. The complete sequence of the zebrafish (Danio rerio) mitochondrial genome and evolutionary patterns in vertebrate mitochondrial DNA. Genome Res 2001; 11(11)1958–1967
  • Elmerot C, Arnason U, Gojobori T, Janke A. The mitochondrial genome of the pufferfish, Fugu rubripes, and ordinal teleostean relationships. Gene 2002; 295(2)163–172
  • Jaillon O, Aury JM, Brunet F, Petit JL, Stange-Thomann N, Mauceli E, Bouneau L, Fischer C, Ozouf-Costaz C, Bernot A, Nicaud S, Jaffe D, Fisher S, Lutfalla G, Dossat C, Segurens B, Dasilva C, Salanoubat M, Levy M, Boudet N, Castellano S, Castellano S, Anthouard V, Jubin C, Castelli V, Katinka M, Vacherie B, Biemont C, Skalli Z, Cattolico L, Poulain J, De Berardinis V, Cruaud C, Duprat S, Brottier P, Coutanceau JP, Gouzy J, Parra G, Lardier G, Chapple C, McKernan KJ, McEwan P, Bosak S, Kellis M, Volff JN, Guigo R, Zody MC, Mesirov J, Lindblad-Toh K, Birren B, Nusbaum C, Kahn D, Robinson-Rechavi M, Laudet V, Schachter V, Quetier F, Saurin W, Scarpelli C, Wincker P, Lander ES, Weissenbach J, Roest Crollius H. Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype. Nature 2004; 431(7011)946–957
  • Kumar S, Tamura K, Jakobsen IB, Nei M. MEGA2: Molecular evolutionary genetics analysis software. Bioinformatics 2001; 17: 1244–1245
  • Lin G, Lo LC, Zhu ZY, Feng F, Chou R, Yue GH. The complete mitochondrial genome sequence and characterization of SNPs in the control region of the Asian seabass Lates calcarifer. Mar Biotechnol 2006; 8(1)71–79
  • Lowe TM, Eddy SR. tRNAscan-SE: A program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res 1997; 25(5)955–964
  • Machida RJ, Miya MU, Nishida M, Nishida S. Complete mitochondrial DNA sequence of Tigriopus japonicus (Crustacea: Copepoda). Mar Biotechnol 2002; 4(4)406–417
  • Miya M, Takeshima H, Endo H, Ishiguro NB, Inoue JG, Mukai T, Satoh TP, Yamaguchi M, Kawaguchi A, Mabuchi K, Shirai SM, Nishida M. Major patterns of higher teleostean phylogenies: A new perspective based on 100 complete mitochondrial DNA sequences. Mol Phylogenet Evol 2001; 26(1)121–138
  • Nelson J. Fishes of the world. John Wiley and Sons, New York 1994
  • Noguchi Y, Endo K, Tajima F, Ueshima R. The mitochondrial genome of the brachiopod Laqueus rubellus. Genetics 2000; 155(1)245–259
  • Schwartz M, Vissing J. Paternal inheritance of mitochondrial DNA. Ugeskr Laeger 2003; 165(38)3627–3630
  • Slott EFJ, Shade RO, Lansman RA. Sequence analysis of mitochondrial DNA in a mouse cell line resistant to chloramphenicol and oligomycin. Mol Cell Biol 1983; 3: 1694–1702
  • St John JC, Schatten G. Paternal mitochondrial DNA transmission during nonhuman primate nuclear transfer. Genetics 2004; 167(2)897–905
  • Sun H, Zhou K, Song D. Mitochondrial genome of the Chinese mitten crab Eriocheir japonica sinenesis (Brachyura: Thoracotremata: Grapsoidea) reveals a novel gene order and two target regions of gene rearrangements. Gene 2005; 349: 207–217
  • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F, Higgins DG. The CLUSTAL_X windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 1997; 25(24)4876–4882
  • Yue GH, Orban L. Rapid isolation of DNA from fresh and preserved fish scales for polymerase chain reaction. Mar Biotechnol 2001; 3(3)199–204
  • Zhang P, Zhou H, Liang D, Liu YF, Chen YQ, Qu LH. The complete mitochondrial genome of a tree frog, Polypedates megacephalus (Amphibia: Anura: Rhacophoridae), and a novel gene organization in living amphibians. Gene 2005; 346: 133–143

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