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Original

Tandem and single genes of three membrane-bound nitrate transporters in the nar gene cluster of the moderately halophilic denitrifier, Halomonas halodenitrificans

Full Length Research Article

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Pages 363-369 | Received 19 Jan 2006, Published online: 11 Jul 2009

References

  • Current protocols in molecular biology, FM Ausubel, R Brent, RE Kingston, DD Moore, JG Seidman, JA Smith, K Struhl. John Wiley & Sons Inc, New York. vol 3
  • Averill BA. Dissimilatory nitrite and nitric oxide reductases. Chem Rev 1996; 96: 2951–2964
  • Ballard AL, Ferguson SJ. Respiratory nitrate reductase from Paracoccus denitrificans. Evidence for two b-type haems in the γ subunit and properties of a water-soluble active enzyme containing α and β subunits. Eur J Biochem 1988; 174: 207–212
  • Berks BC, Ferguson SJ, Moir JWB, Richardson DJ. Enzymes and associated electron transport systems that catalyze the respiratory reduction of nitrogen oxides and oxyanions. Biochim Biophys Acta 1995; 1232: 97–173
  • Darwin AJ, Stewart V. The NAR modulon systems: Nitrate and nitrite regulation of anaerobic gene expression. Regulation of gene expression in Escherichia coli, ECC Lin, AS Lynch. Chapman & Hall, New York 1996
  • Härtig E, Schiek U, Vollack K-U, Zumft WG. Nitrate and nitrite control of respiratory nitrate reduction in denitrifying Pseudomonas stutzeri by a two-component regulatory system homologous to NarXL of Escherichia coli. J Bacteriol 1990; 181: 3658–3665
  • Hirokawa T, Boon-Chieng S, Mitaku S. SOSUI: Classification and secondary structure prediction system for membrane proteins. Bioinformatics 1998; 14: 378–379
  • John P. Aerobic and anaerobic bacterial respiration monitored by electrodes. J Gen Microbiol 1977; 98: 231–238
  • Kwiatkowski AV, Shapleigh JP. Requirement of nitric oxide for induction of genes whose products are involved in nitric oxide metabolism in Rhodobacter sphaeroides 2.4.3. J Biol Chem 1996; 271: 24382–24388
  • Kyte J, Doolittle RF. A simple method for displaying the hydropathic character of a protein. J Mol Biol 1982; 157: 105–132
  • Luque I, Flores E, Herrero A. Nitrate and nitrite transport in the cyanobacterium Synechococcus sp. PCC 7942 are mediated by the same permease. Biochim Biophys Acta 1994; 1184: 296–298
  • Mogi T, Tsubaki M, Hori H, Miyoshi H, Nakamura H, Anraku Y. Two terminal quinol oxidase families in Escherichia coli: Variations on molecular machinery for dioxygen reduction. J Biochem Mol Biol Biophys 1998; 2: 79–110
  • Moir JWB, Wood NJ. Nitrate and nitrite transport in bacteria. Cell Mol Life Sci 2001; 58: 215–224
  • Palmedo G, Seither P, Körner H, Matthews JC, Burkhalter RS, Timkovich R, Zumft WG. Resolution of the nirD locus for heme d1 synthesis of cytochrome cd1 (respiratory nitrite reductase) from Pseudomonas stutzeri. Eur J Biochem 1995; 232: 737–746
  • Pao SS, Paulsen IT, Saier MH, Jr. Major facilitator superfamily. Microbiol Mol Biol Rev 1998; 62: 1–34
  • Parsonage D, Greenfield AJ, Ferguson SJ. The high affinity of Paracoccus denitrificans cells for nitrate as an electron acceptor. Analysis of possible mechanisms of nitrate and nitrite movement across the plasma membrane and the basis for inhibition by added nitrite of oxidase activity in permeabilised cells. Biochim Biophys Acta 1985; 807: 81–95
  • Paulsen IT, Brown MH, Skurray RA. Proton-dependent multidrug efflux systems. Microbiol Rev 1996; 60: 575–608
  • Ramírez S, Moreno R, Zafra O, Castán P, Vallés C, Berenguer J. Two nitrate/nitrite transporters are encoded within the mobilizable plasmid for nitrate respiration of Thermus thermophilus HB8. J Bacteriol 2000; 182: 2179–2183
  • Saier MH, Jr. Tracing pathways of transport protein evolution. Mol Microbiol 2003; 48: 1145–1156
  • Saitou N, Nei M. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol Biol Evol 1987; 4: 406–425
  • Sakurai N, Sakurai T. Isolation and characterization of nitric oxide reductase from Paracoccus halodenitrificans. Biochemistry 1997; 36: 13809–13815
  • Sakurai N, Sakurai T. Genomic DNA cloning of the region encoding nitric oxide reductase in Paracoccus halodenitrificans and a structure model relevant to cytochrome oxidase. Biochem Biophys Res Commun 1998; 243: 400–406
  • Saraste M, Castresana J. Cytochrome oxidase evolved by tinkering with denitrification enzymes. FEBS Lett 1994; 341: 1–4
  • Tosques IE, Kwiatkowski AV, Shi J, Shapleigh JP. Characterization and regulation of the gene encoding nitrite reductase in Rhodobacter sphaeroides 2.4.3. J Bacteriol 1996; 179: 1090–1095
  • Van Spanning RJM, Houben E, Reijnders WNM, Spiro S, Westerhoff HV, Saunders N. Nitric oxide is a signal for NNR-mediated transcription activation in Paracoccus denitrificans. J Bacteriol 1999; 181: 4129–4132
  • Vollack K-U, Zumft WG. Nitric oxide signaling and transcriptional control of denitrification genes in Pseudomonas stutzeri. J Bacteriol 2001; 183: 2516–2526
  • Wood NJ, Alizadeh T, Richardson DJ, Ferguson SJ, Moir JWB. Two domains of a dual-function NarK protein are required for nitrate uptake, the first step of denitrification in Paracoccus pantotrophus. Mol Microbiol 2002; 44: 157–170
  • Zumft WG. Cell biology and molecular basis of denitrification. Microbiol Mol Biol Rev 1997; 61: 533–616
  • Zumft WG, Braun C, Cuypers H. Nitric oxide reductase from Pseudomonas stutzeri: Primary structure and gene organization of a novel bacterial cytochrome bc complex. Eur J Biochem 1994; 219: 481–490

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